Wall clock time and date at job start Mon Mar 30 2020 03:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99757 * 2 1 4 4 C 1.50700 * 112.85039 * 296.18887 * 3 2 1 5 5 C 1.50694 * 120.00157 * 314.51177 * 4 3 2 6 6 N 1.28010 * 119.99925 * 134.50414 * 4 3 2 7 7 N 1.40101 * 120.00243 * 180.02562 * 6 4 3 8 8 C 1.46490 * 120.00338 * 180.02562 * 7 6 4 9 9 H 1.09001 * 109.47417 * 30.00177 * 8 7 6 10 10 C 1.52993 * 109.47347 * 269.99969 * 8 7 6 11 11 C 1.50698 * 109.47317 * 149.99791 * 8 7 6 12 12 H 1.08006 * 120.00282 * 359.97438 * 11 8 7 13 13 C 1.37879 * 120.00048 * 180.02562 * 11 8 7 14 14 N 1.31513 * 120.00113 * 359.97438 * 13 11 8 15 15 Si 1.86804 * 119.99956 * 180.02562 * 13 11 8 16 16 H 1.48506 * 109.47026 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47234 * 119.99810 * 15 13 11 18 18 H 1.48505 * 109.47255 * 240.00019 * 15 13 11 19 19 C 1.53773 * 113.61269 * 164.98945 * 3 2 1 20 20 C 1.54048 * 86.98887 * 270.84099 * 19 3 2 21 21 C 1.53779 * 87.07734 * 334.56844 * 20 19 3 22 22 H 1.08998 * 109.47390 * 295.83213 * 1 2 3 23 23 H 1.08994 * 109.47242 * 55.83302 * 1 2 3 24 24 H 1.09003 * 109.47002 * 175.83734 * 1 2 3 25 25 H 1.09000 * 109.47581 * 95.22953 * 5 4 3 26 26 H 1.08998 * 109.47185 * 215.23385 * 5 4 3 27 27 H 1.09011 * 109.46956 * 335.22735 * 5 4 3 28 28 H 0.97003 * 119.99361 * 0.02562 * 7 6 4 29 29 H 1.09003 * 109.47145 * 299.99917 * 10 8 7 30 30 H 1.09000 * 109.46896 * 59.99669 * 10 8 7 31 31 H 1.09000 * 109.47434 * 179.97438 * 10 8 7 32 32 H 0.97005 * 119.99554 * 180.02562 * 14 13 11 33 33 H 1.08997 * 113.61428 * 25.43716 * 19 3 2 34 34 H 1.09005 * 113.61348 * 156.33531 * 19 3 2 35 35 H 1.09004 * 113.61728 * 220.02127 * 20 19 3 36 36 H 1.08994 * 113.69143 * 89.12665 * 20 19 3 37 37 H 1.09005 * 113.61869 * 270.88123 * 21 20 19 38 38 H 1.08995 * 113.69279 * 139.98559 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6883 2.0894 -1.2462 5 6 1.8041 1.4353 -2.5988 6 7 1.3163 3.3109 -1.1557 7 7 1.0165 4.0396 -2.3141 8 6 0.5914 5.4376 -2.2107 9 1 1.0467 5.8917 -1.3306 10 6 -0.9322 5.4995 -2.0859 11 6 1.0252 6.1872 -3.4439 12 1 1.5642 5.6737 -4.2264 13 6 0.7351 7.5289 -3.5729 14 7 0.0792 8.1544 -2.6199 15 14 1.2723 8.4580 -5.1019 16 1 1.9879 7.5330 -6.0172 17 1 0.0783 9.0109 -5.7902 18 1 2.1784 9.5686 -4.7135 19 6 3.5040 1.3147 0.3649 20 6 3.0610 1.4538 1.8338 21 6 1.7657 2.0886 1.3008 22 1 -0.3634 0.4478 0.9249 23 1 -0.3633 0.5771 -0.8502 24 1 -0.3633 -1.0250 -0.0746 25 1 0.8289 1.0556 -2.9035 26 1 2.1531 2.1669 -3.3275 27 1 2.5143 0.6101 -2.5437 28 1 1.0905 3.6182 -3.1848 29 1 -1.3876 5.0454 -2.9661 30 1 -1.2460 4.9573 -1.1939 31 1 -1.2485 6.5397 -2.0085 32 1 -0.1252 9.0983 -2.7109 33 1 4.0123 0.3753 0.1478 34 1 4.0406 2.1848 -0.0136 35 1 3.6780 2.1411 2.4128 36 1 2.9048 0.4994 2.3363 37 1 1.8278 3.1699 1.1777 38 1 0.8708 1.7745 1.8379 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853323497.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:42 Heat of formation + Delta-G solvation = -0.161436 kcal Electronic energy + Delta-G solvation = -17753.646451 eV Core-core repulsion = 15018.418192 eV Total energy + Delta-G solvation = -2735.228259 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.02579 -38.20578 -36.51736 -35.95403 -33.36380 -30.39278 -28.59594 -28.04185 -27.30042 -26.27413 -25.57481 -22.44624 -21.04204 -20.15757 -18.77291 -17.46492 -17.00175 -16.86443 -16.27604 -16.04526 -15.54887 -15.16923 -15.00921 -14.56761 -14.34149 -13.89868 -13.28469 -13.22853 -13.17726 -12.94224 -12.79474 -12.72883 -12.38800 -12.31600 -12.14054 -11.99189 -11.83568 -11.68038 -11.18146 -11.12240 -10.96093 -10.58541 -10.25283 -8.59321 -8.18577 -6.35493 1.40666 1.41880 1.44263 1.53867 2.18383 2.45808 2.75441 3.10216 3.56406 3.80108 3.83315 3.97204 4.35842 4.39949 4.48716 4.55044 4.58985 4.64175 4.76786 4.77675 4.87609 4.93149 4.96296 5.07641 5.10164 5.12399 5.16469 5.26784 5.39942 5.44271 5.56425 5.79770 5.87555 6.16093 6.31281 6.43939 6.86228 7.36553 7.85483 8.86564 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036536 B = 0.005282 C = 0.005257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.176408 B = 5299.286500 C = 5325.039494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.155 3.845 4 C -0.001 4.001 5 C -0.130 4.130 6 N -0.236 5.236 7 N -0.647 5.647 8 C 0.308 3.692 9 H 0.000 1.000 10 C -0.134 4.134 11 C -0.546 4.546 12 H 0.058 0.942 13 C 0.019 3.981 14 N -0.914 5.914 15 Si 0.970 3.030 16 H -0.268 1.268 17 H -0.276 1.276 18 H -0.279 1.279 19 C -0.110 4.110 20 C -0.122 4.122 21 C -0.160 4.160 22 H 0.045 0.955 23 H 0.028 0.972 24 H 0.111 0.889 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.371 0.629 29 H 0.028 0.972 30 H 0.016 0.984 31 H 0.068 0.932 32 H 0.267 0.733 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.373 -14.823 4.903 15.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.113 3.887 4 C -0.196 4.196 5 C -0.189 4.189 6 N -0.046 5.046 7 N -0.385 5.385 8 C 0.204 3.796 9 H 0.017 0.983 10 C -0.193 4.193 11 C -0.585 4.585 12 H 0.076 0.924 13 C -0.181 4.181 14 N -0.553 5.553 15 Si 0.794 3.206 16 H -0.192 1.192 17 H -0.201 1.201 18 H -0.205 1.205 19 C -0.149 4.149 20 C -0.160 4.160 21 C -0.198 4.198 22 H 0.064 0.936 23 H 0.047 0.953 24 H 0.129 0.871 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.210 0.790 29 H 0.047 0.953 30 H 0.035 0.965 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.115 0.885 37 H 0.097 0.903 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.153 -13.900 5.630 15.325 hybrid contribution -0.166 0.455 -1.794 1.858 sum 2.987 -13.445 3.836 14.297 Atomic orbital electron populations 1.22841 0.80299 1.03592 1.00106 1.87849 1.20629 1.24676 1.94504 1.21019 0.96305 0.82571 0.88798 1.24856 1.04861 0.92278 0.97598 1.20969 1.03015 1.01152 0.93799 1.73433 1.07620 1.07878 1.15715 1.48518 1.76682 1.11850 1.01493 1.18060 0.90547 0.75554 0.95404 0.98255 1.22002 0.98904 1.01449 0.96982 1.21547 1.37240 0.95235 1.04492 0.92388 1.25701 0.94698 0.98041 0.99676 1.70024 1.40186 1.10791 1.34298 0.85337 0.78083 0.78233 0.78901 1.19222 1.20139 1.20484 1.22996 0.91986 1.03307 0.96562 1.22807 0.95870 1.01625 0.95655 1.23408 0.99627 1.00485 0.96249 0.93643 0.95295 0.87102 0.91262 0.92965 0.89257 0.79037 0.95327 0.96480 0.91355 0.92412 0.88880 0.89607 0.90213 0.88468 0.90331 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.64 113.37 1.21 1.83 16 2 O -0.36 -9.27 10.36 -148.98 -1.54 -10.82 16 3 C 0.16 4.35 1.00 -11.01 -0.01 4.33 16 4 C 0.00 -0.04 5.35 46.53 0.25 0.21 16 5 C -0.13 -3.81 9.16 71.23 0.65 -3.16 16 6 N -0.24 -9.79 10.06 -41.21 -0.41 -10.21 16 7 N -0.65 -29.68 5.93 -172.55 -1.02 -30.71 16 8 C 0.31 16.41 3.23 44.24 0.14 16.55 16 9 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 10 C -0.13 -6.85 9.29 71.98 0.67 -6.19 16 11 C -0.55 -30.14 8.74 25.60 0.22 -29.92 16 12 H 0.06 3.13 7.79 -2.91 -0.02 3.11 16 13 C 0.02 1.04 5.30 84.66 0.45 1.49 16 14 N -0.91 -52.18 11.32 21.45 0.24 -51.94 16 15 Si 0.97 42.89 29.54 68.60 2.03 44.91 16 16 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 17 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 19 C -0.11 -2.62 7.48 31.21 0.23 -2.38 16 20 C -0.12 -2.63 8.03 31.21 0.25 -2.38 16 21 C -0.16 -4.42 6.98 31.12 0.22 -4.20 16 22 H 0.04 1.00 6.92 -2.39 -0.02 0.98 16 23 H 0.03 0.74 7.33 -2.39 -0.02 0.73 16 24 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.05 1.63 6.61 -2.39 -0.02 1.62 16 27 H 0.09 2.22 8.09 -2.38 -0.02 2.21 16 28 H 0.37 16.04 6.43 -213.32 -1.37 14.66 16 29 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 3.76 6.07 -2.39 -0.01 3.75 16 32 H 0.27 14.29 8.31 -92.70 -0.77 13.52 16 33 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.09 2.20 8.09 -2.38 -0.02 2.18 16 35 H 0.08 1.55 8.14 -2.38 -0.02 1.54 16 36 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.08 2.60 7.29 -2.38 -0.02 2.59 16 38 H 0.07 1.88 6.89 -2.39 -0.02 1.86 16 Total: -1.00 -60.93 308.69 3.23 -57.70 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: -0.34 Total: 24.87 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 4.28 Total: -23.81 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -1.20 Total: -92.86 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -1.54 Total: -10.82 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -60.93 3.23 -57.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853323497.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.537 kcal (2) G-P(sol) polarization free energy of solvation -60.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds