Wall clock time and date at job start Mon Mar 30 2020 03:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08995 * 109.46889 * 2 1 4 4 C 1.50699 * 109.46684 * 119.99751 * 2 1 3 5 5 H 1.08001 * 119.99928 * 120.00416 * 4 2 1 6 6 C 1.37879 * 120.00213 * 299.99626 * 4 2 1 7 7 N 1.31511 * 120.00106 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99990 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46966 * 90.00241 * 8 6 4 10 10 H 1.48497 * 109.47042 * 210.00488 * 8 6 4 11 11 H 1.48502 * 109.47173 * 330.00336 * 8 6 4 12 12 N 1.46493 * 109.47093 * 239.99573 * 2 1 3 13 13 N 1.40109 * 119.99980 * 89.72601 * 12 2 1 14 14 C 1.28003 * 119.99885 * 174.69679 * 13 12 2 15 15 C 1.51274 * 120.85361 * 4.54753 * 14 13 12 16 16 C 1.52801 * 108.76488 * 231.31261 * 15 14 13 17 17 C 1.52959 * 109.48490 * 305.61004 * 16 15 14 18 18 C 1.53002 * 109.41170 * 183.57571 * 17 16 15 19 19 O 1.42904 * 109.40993 * 303.35937 * 17 16 15 20 20 C 1.52961 * 109.81853 * 63.46537 * 17 16 15 21 21 C 1.51273 * 120.85093 * 184.83416 * 14 13 12 22 22 H 1.08999 * 109.46903 * 300.00113 * 1 2 3 23 23 H 1.09003 * 109.46719 * 60.00407 * 1 2 3 24 24 H 1.08995 * 109.46889 * 180.02562 * 1 2 3 25 25 H 0.96993 * 120.00527 * 179.97438 * 7 6 4 26 26 H 0.97003 * 120.00358 * 270.00164 * 12 2 1 27 27 H 1.08997 * 109.62135 * 351.09129 * 15 14 13 28 28 H 1.08997 * 109.62425 * 111.65771 * 15 14 13 29 29 H 1.09002 * 109.54632 * 185.53489 * 16 15 14 30 30 H 1.09001 * 109.34369 * 65.55840 * 16 15 14 31 31 H 1.09005 * 109.46838 * 299.64376 * 18 17 16 32 32 H 1.08994 * 109.47238 * 59.64247 * 18 17 16 33 33 H 1.09000 * 109.46760 * 179.64994 * 18 17 16 34 34 H 0.96699 * 113.99916 * 300.35268 * 19 17 16 35 35 H 1.09002 * 109.47949 * 176.42092 * 20 17 16 36 36 H 1.09003 * 109.48819 * 56.38836 * 20 17 16 37 37 H 1.08998 * 109.62285 * 248.34525 * 21 14 13 38 38 H 1.09007 * 109.61997 * 8.71882 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9429 0.8298 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.6304 -0.5439 4.4119 10 1 1.3443 -0.9488 5.1123 11 1 2.4879 -2.5652 3.7123 12 7 2.0184 -0.6907 -1.1961 13 7 2.2464 0.0288 -2.3765 14 6 2.7683 -0.5532 -3.3900 15 6 3.0522 -2.0389 -3.3705 16 6 4.5033 -2.2677 -3.7907 17 6 4.7556 -1.5949 -5.1411 18 6 6.1821 -1.8998 -5.6025 19 8 3.8282 -2.1000 -6.1039 20 6 4.5767 -0.0817 -5.0080 21 6 3.1230 0.2283 -4.6358 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 0.7082 1.1611 3.4843 26 1 2.1801 -1.6468 -1.1720 27 1 2.8979 -2.4278 -2.3640 28 1 2.3874 -2.5478 -4.0684 29 1 4.6939 -3.3375 -3.8762 30 1 5.1682 -1.8388 -3.0410 31 1 6.8912 -1.5125 -4.8708 32 1 6.3106 -2.9780 -5.6976 33 1 6.3608 -1.4260 -6.5677 34 1 3.8846 -3.0557 -6.2406 35 1 4.8193 0.3978 -5.9564 36 1 5.2397 0.2959 -4.2296 37 1 2.4648 -0.0670 -5.4529 38 1 3.0110 1.2953 -4.4428 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863103614.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:14 Heat of formation + Delta-G solvation = -26.656301 kcal Electronic energy + Delta-G solvation = -17602.972143 eV Core-core repulsion = 14866.594981 eV Total energy + Delta-G solvation = -2736.377162 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.44906 -36.68568 -34.61045 -33.10601 -31.40325 -30.95021 -29.67750 -26.93780 -25.18887 -24.22005 -22.93701 -20.69216 -20.11053 -18.54680 -17.03692 -16.13991 -15.79015 -15.03755 -14.71515 -14.39006 -13.93253 -13.88307 -13.29279 -12.94359 -12.52660 -12.46540 -12.24951 -11.93933 -11.70129 -11.60700 -11.21155 -11.07257 -11.04288 -10.90169 -10.66127 -10.40649 -10.23753 -10.15837 -9.99866 -9.74792 -9.11074 -8.82798 -8.46248 -6.73198 -6.08742 -4.16485 3.07394 3.26093 3.32359 3.34953 4.02366 4.21578 4.41916 4.69783 4.78042 4.89595 5.20813 5.23244 5.33871 5.49996 5.53317 5.59334 5.72629 5.74972 5.83607 5.88772 6.05649 6.08959 6.23708 6.28174 6.48126 6.69221 6.86744 7.08868 7.20411 7.26484 7.64649 7.66132 7.88885 7.95688 8.26572 8.44273 8.93903 9.49960 9.58613 10.97175 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037459 B = 0.005099 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.303851 B = 5490.175585 C = 5873.877821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.300 3.700 3 H 0.038 0.962 4 C -0.527 4.527 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.642 5.642 13 N -0.214 5.214 14 C 0.000 4.000 15 C -0.098 4.098 16 C -0.134 4.134 17 C 0.132 3.868 18 C -0.178 4.178 19 O -0.555 6.555 20 C -0.097 4.097 21 C -0.039 4.039 22 H 0.087 0.913 23 H 0.011 0.989 24 H 0.023 0.977 25 H 0.263 0.737 26 H 0.366 0.634 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.370 0.630 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.657 -5.677 -14.509 17.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.197 3.803 3 H 0.056 0.944 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.381 5.381 13 N -0.023 5.023 14 C -0.194 4.194 15 C -0.138 4.138 16 C -0.173 4.173 17 C 0.091 3.909 18 C -0.235 4.235 19 O -0.360 6.360 20 C -0.136 4.136 21 C -0.078 4.078 22 H 0.106 0.894 23 H 0.030 0.970 24 H 0.042 0.958 25 H 0.073 0.927 26 H 0.204 0.796 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.216 0.784 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.961 -3.916 -13.865 16.001 hybrid contribution 0.746 -2.333 0.873 2.600 sum 7.707 -6.248 -12.992 16.347 Atomic orbital electron populations 1.22204 0.99457 0.98947 1.00318 1.18412 0.89912 0.93367 0.78599 0.94426 1.21245 1.31919 1.13095 0.90346 0.92440 1.24858 0.94904 0.95042 0.98880 1.69894 1.36142 1.22657 1.23761 0.86453 0.78583 0.79844 0.82239 1.20589 1.21052 1.19956 1.48913 1.75061 1.07771 1.06344 1.73443 1.06965 1.27642 0.94242 1.24166 1.05508 0.93543 0.96215 1.20776 0.96374 0.95443 1.01232 1.22077 0.97673 1.00070 0.97483 1.21162 0.87545 0.94738 0.87442 1.22500 0.97242 1.01690 1.02111 1.86568 1.60649 1.26876 1.61891 1.21519 0.97692 0.92713 1.01652 1.20117 0.95394 0.98885 0.93445 0.89402 0.96968 0.95766 0.92659 0.79598 0.91696 0.90789 0.92027 0.91022 0.91616 0.92567 0.91905 0.78351 0.91189 0.90630 0.90555 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 9.29 37.16 0.35 -3.51 16 2 C 0.30 7.96 3.23 -69.08 -0.22 7.74 16 3 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 4 C -0.53 -14.55 8.74 -34.44 -0.30 -14.85 16 5 H 0.06 1.56 7.79 -52.49 -0.41 1.15 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.89 -25.24 11.32 55.43 0.63 -24.62 16 8 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 12 N -0.64 -14.94 5.99 -5.88 -0.04 -14.98 16 13 N -0.21 -4.61 11.43 35.87 0.41 -4.20 16 14 C 0.00 0.00 6.53 -78.35 -0.51 -0.51 16 15 C -0.10 -1.47 5.63 -27.70 -0.16 -1.62 16 16 C -0.13 -1.61 4.93 -26.85 -0.13 -1.74 16 17 C 0.13 1.42 0.97 -90.66 -0.09 1.33 16 18 C -0.18 -1.54 8.80 37.16 0.33 -1.21 16 19 O -0.55 -5.97 11.54 -35.23 -0.41 -6.37 16 20 C -0.10 -1.16 4.98 -26.64 -0.13 -1.29 16 21 C -0.04 -0.56 5.89 -27.49 -0.16 -0.72 16 22 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 23 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.37 8.00 6.08 -182.59 -1.11 6.89 16 27 H 0.06 1.06 5.57 -51.93 -0.29 0.77 16 28 H 0.07 1.05 7.77 -51.93 -0.40 0.64 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.37 2.66 9.04 45.56 0.41 3.07 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 1.08 7.77 -51.93 -0.40 0.67 16 38 H 0.07 1.06 8.13 -51.92 -0.42 0.63 16 LS Contribution 303.37 15.07 4.57 4.57 Total: -1.00 -30.02 303.37 -7.28 -37.31 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.30 Total: 6.89 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -1.13 Total: -14.69 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 1.00 Total: -43.80 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.41 Total: -6.37 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.02 -7.28 -37.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863103614.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.649 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds