Wall clock time and date at job start Mon Mar 30 2020 03:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08995 * 109.46889 * 2 1 4 4 C 1.50699 * 109.46684 * 119.99751 * 2 1 3 5 5 H 1.08001 * 119.99928 * 120.00416 * 4 2 1 6 6 C 1.37879 * 120.00213 * 299.99626 * 4 2 1 7 7 N 1.31511 * 120.00106 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99990 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46966 * 90.00241 * 8 6 4 10 10 H 1.48497 * 109.47042 * 210.00488 * 8 6 4 11 11 H 1.48502 * 109.47173 * 330.00336 * 8 6 4 12 12 N 1.46493 * 109.47093 * 239.99573 * 2 1 3 13 13 N 1.40109 * 119.99980 * 89.72601 * 12 2 1 14 14 C 1.28003 * 119.99885 * 174.69679 * 13 12 2 15 15 C 1.51274 * 120.85361 * 4.54753 * 14 13 12 16 16 C 1.52801 * 108.76488 * 231.31261 * 15 14 13 17 17 C 1.52959 * 109.48490 * 305.61004 * 16 15 14 18 18 C 1.53002 * 109.41170 * 183.57571 * 17 16 15 19 19 O 1.42904 * 109.40993 * 303.35937 * 17 16 15 20 20 C 1.52961 * 109.81853 * 63.46537 * 17 16 15 21 21 C 1.51273 * 120.85093 * 184.83416 * 14 13 12 22 22 H 1.08999 * 109.46903 * 300.00113 * 1 2 3 23 23 H 1.09003 * 109.46719 * 60.00407 * 1 2 3 24 24 H 1.08995 * 109.46889 * 180.02562 * 1 2 3 25 25 H 0.96993 * 120.00527 * 179.97438 * 7 6 4 26 26 H 0.97003 * 120.00358 * 270.00164 * 12 2 1 27 27 H 1.08997 * 109.62135 * 351.09129 * 15 14 13 28 28 H 1.08997 * 109.62425 * 111.65771 * 15 14 13 29 29 H 1.09002 * 109.54632 * 185.53489 * 16 15 14 30 30 H 1.09001 * 109.34369 * 65.55840 * 16 15 14 31 31 H 1.09005 * 109.46838 * 299.64376 * 18 17 16 32 32 H 1.08994 * 109.47238 * 59.64247 * 18 17 16 33 33 H 1.09000 * 109.46760 * 179.64994 * 18 17 16 34 34 H 0.96699 * 113.99916 * 300.35268 * 19 17 16 35 35 H 1.09002 * 109.47949 * 176.42092 * 20 17 16 36 36 H 1.09003 * 109.48819 * 56.38836 * 20 17 16 37 37 H 1.08998 * 109.62285 * 248.34525 * 21 14 13 38 38 H 1.09007 * 109.61997 * 8.71882 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9429 0.8298 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.6304 -0.5439 4.4119 10 1 1.3443 -0.9488 5.1123 11 1 2.4879 -2.5652 3.7123 12 7 2.0184 -0.6907 -1.1961 13 7 2.2464 0.0288 -2.3765 14 6 2.7683 -0.5532 -3.3900 15 6 3.0522 -2.0389 -3.3705 16 6 4.5033 -2.2677 -3.7907 17 6 4.7556 -1.5949 -5.1411 18 6 6.1821 -1.8998 -5.6025 19 8 3.8282 -2.1000 -6.1039 20 6 4.5767 -0.0817 -5.0080 21 6 3.1230 0.2283 -4.6358 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 0.7082 1.1611 3.4843 26 1 2.1801 -1.6468 -1.1720 27 1 2.8979 -2.4278 -2.3640 28 1 2.3874 -2.5478 -4.0684 29 1 4.6939 -3.3375 -3.8762 30 1 5.1682 -1.8388 -3.0410 31 1 6.8912 -1.5125 -4.8708 32 1 6.3106 -2.9780 -5.6976 33 1 6.3608 -1.4260 -6.5677 34 1 3.8846 -3.0557 -6.2406 35 1 4.8193 0.3978 -5.9564 36 1 5.2397 0.2959 -4.2296 37 1 2.4648 -0.0670 -5.4529 38 1 3.0110 1.2953 -4.4428 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863103614.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:14 Heat of formation + Delta-G solvation = -47.499182 kcal Electronic energy + Delta-G solvation = -17603.875958 eV Core-core repulsion = 14866.594981 eV Total energy + Delta-G solvation = -2737.280977 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.49248 -38.14878 -36.30879 -34.50920 -32.98718 -32.10106 -30.96646 -28.55202 -27.29130 -25.37676 -24.09423 -22.33210 -21.38602 -20.01091 -18.64027 -17.56793 -16.99424 -16.92590 -15.85965 -15.59174 -15.29742 -15.07301 -14.55230 -14.38981 -14.19067 -13.91377 -13.45070 -13.26336 -12.93804 -12.83838 -12.78683 -12.63309 -12.56374 -12.31862 -12.17780 -12.05861 -11.88765 -11.69738 -11.36016 -11.07004 -10.69750 -10.56882 -10.34229 -8.48529 -8.17113 -6.34747 1.41472 1.42481 1.52983 1.61221 2.28608 2.53608 3.10932 3.41781 3.76713 3.78079 3.98914 4.10296 4.27621 4.43749 4.50249 4.61087 4.70101 4.75095 4.86463 4.89995 4.95732 4.97866 5.10471 5.13762 5.15895 5.18594 5.34804 5.34914 5.44913 5.51135 5.62068 5.83475 5.92894 6.25592 6.47977 6.88943 7.03373 7.37479 7.96060 8.87854 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037459 B = 0.005099 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.303851 B = 5490.175585 C = 5873.877821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.309 3.691 3 H -0.005 1.005 4 C -0.546 4.546 5 H 0.058 0.942 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.972 3.028 9 H -0.275 1.275 10 H -0.279 1.279 11 H -0.266 1.266 12 N -0.656 5.656 13 N -0.270 5.270 14 C 0.031 3.969 15 C -0.101 4.101 16 C -0.130 4.130 17 C 0.137 3.863 18 C -0.172 4.172 19 O -0.566 6.566 20 C -0.098 4.098 21 C -0.041 4.041 22 H 0.068 0.932 23 H 0.014 0.986 24 H 0.027 0.973 25 H 0.267 0.733 26 H 0.369 0.631 27 H 0.047 0.953 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.387 0.613 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.113 -7.365 -15.785 19.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.204 3.796 3 H 0.013 0.987 4 C -0.585 4.585 5 H 0.076 0.924 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.796 3.204 9 H -0.201 1.201 10 H -0.204 1.204 11 H -0.191 1.191 12 N -0.396 5.396 13 N -0.077 5.077 14 C -0.164 4.164 15 C -0.142 4.142 16 C -0.169 4.169 17 C 0.096 3.904 18 C -0.229 4.229 19 O -0.374 6.374 20 C -0.136 4.136 21 C -0.081 4.081 22 H 0.086 0.914 23 H 0.033 0.967 24 H 0.046 0.954 25 H 0.076 0.924 26 H 0.208 0.792 27 H 0.066 0.934 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.237 0.763 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.423 -5.621 -15.166 18.236 hybrid contribution 0.321 -1.808 1.057 2.119 sum 8.744 -7.428 -14.109 18.185 Atomic orbital electron populations 1.22020 0.99266 0.98756 0.99392 1.18024 0.90017 0.91374 0.80140 0.98684 1.21501 1.32376 1.13356 0.91252 0.92392 1.25737 0.94868 0.95672 1.01953 1.70022 1.36877 1.23841 1.24641 0.85357 0.78025 0.78880 0.78129 1.20107 1.20396 1.19079 1.48443 1.76964 1.07616 1.06531 1.73504 1.10831 1.28485 0.94893 1.25068 1.00400 0.95411 0.95535 1.20867 0.99094 0.93392 1.00806 1.22084 0.94797 1.02000 0.97971 1.21054 0.89057 0.93504 0.86774 1.22427 0.95286 1.02937 1.02290 1.86530 1.60730 1.28633 1.61504 1.21559 0.95299 0.94276 1.02499 1.20282 0.97633 0.98175 0.92003 0.91355 0.96672 0.95388 0.92414 0.79151 0.93407 0.89314 0.89353 0.92239 0.91574 0.90920 0.91267 0.76346 0.89188 0.90998 0.89544 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.18 9.29 71.99 0.67 -6.51 16 2 C 0.31 17.08 3.23 44.25 0.14 17.22 16 3 H 0.00 -0.30 8.14 -2.39 -0.02 -0.32 16 4 C -0.55 -30.85 8.74 25.60 0.22 -30.62 16 5 H 0.06 3.18 7.79 -2.91 -0.02 3.16 16 6 C 0.02 0.99 5.30 84.66 0.45 1.44 16 7 N -0.92 -53.25 11.32 21.45 0.24 -53.01 16 8 Si 0.97 43.38 29.54 68.60 2.03 45.41 16 9 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 10 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 12 N -0.66 -31.57 5.99 -172.53 -1.03 -32.61 16 13 N -0.27 -11.95 11.43 -40.33 -0.46 -12.41 16 14 C 0.03 1.06 6.53 46.90 0.31 1.37 16 15 C -0.10 -2.90 5.63 29.96 0.17 -2.73 16 16 C -0.13 -2.79 4.93 30.51 0.15 -2.64 16 17 C 0.14 2.51 0.97 -10.82 -0.01 2.50 16 18 C -0.17 -2.33 8.80 71.98 0.63 -1.69 16 19 O -0.57 -10.10 11.54 -148.98 -1.72 -11.82 16 20 C -0.10 -2.10 4.98 30.66 0.15 -1.95 16 21 C -0.04 -1.14 5.89 30.10 0.18 -0.96 16 22 H 0.07 3.88 6.07 -2.39 -0.01 3.87 16 23 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 26 H 0.37 16.61 6.08 -213.31 -1.30 15.31 16 27 H 0.05 1.55 5.57 -2.39 -0.01 1.53 16 28 H 0.09 2.32 7.77 -2.39 -0.02 2.30 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.39 3.99 9.04 -74.06 -0.67 3.32 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.09 2.26 7.77 -2.39 -0.02 2.25 16 38 H 0.07 1.90 8.13 -2.38 -0.02 1.88 16 Total: -1.00 -65.94 303.37 1.20 -64.73 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: -0.92 Total: 24.28 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: 3.06 Total: -24.58 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -1.25 Total: -98.02 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -1.72 Total: -11.82 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -65.94 1.20 -64.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863103614.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.234 kcal (2) G-P(sol) polarization free energy of solvation -65.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds