Wall clock time and date at job start Mon Mar 30 2020 03:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.28008 * 120.00011 * 2 1 4 4 N 1.40106 * 120.00123 * 359.97438 * 3 2 1 5 5 C 1.46498 * 119.99644 * 180.02562 * 4 3 2 6 6 H 1.08992 * 109.47715 * 29.99774 * 5 4 3 7 7 C 1.53009 * 109.46906 * 269.99447 * 5 4 3 8 8 C 1.50697 * 109.46638 * 150.00097 * 5 4 3 9 9 H 1.08003 * 120.00429 * 359.97438 * 8 5 4 10 10 C 1.37887 * 119.99792 * 179.97438 * 8 5 4 11 11 N 1.31507 * 119.99806 * 0.02562 * 10 8 5 12 12 Si 1.86796 * 119.99925 * 179.97438 * 10 8 5 13 13 H 1.48508 * 109.47230 * 60.00432 * 12 10 8 14 14 H 1.48504 * 109.46866 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47502 * 300.00459 * 12 10 8 16 16 C 1.50700 * 119.99603 * 179.97438 * 2 1 3 17 17 H 1.09003 * 109.48275 * 299.97829 * 16 2 1 18 18 C 1.53280 * 109.45397 * 179.97438 * 16 2 1 19 19 C 1.53179 * 109.06328 * 182.44890 * 18 16 2 20 20 C 1.53177 * 109.10692 * 56.94222 * 19 18 16 21 21 C 1.53091 * 109.16264 * 302.97408 * 20 19 18 22 22 O 1.42901 * 109.47878 * 60.00484 * 16 2 1 23 23 H 1.08997 * 109.47698 * 270.00395 * 1 2 3 24 24 H 1.09009 * 109.46920 * 30.00371 * 1 2 3 25 25 H 1.08991 * 109.47262 * 149.99816 * 1 2 3 26 26 H 0.96996 * 119.99827 * 0.02562 * 4 3 2 27 27 H 1.08999 * 109.46843 * 300.00586 * 7 5 4 28 28 H 1.08996 * 109.46584 * 60.00369 * 7 5 4 29 29 H 1.08998 * 109.46761 * 180.02562 * 7 5 4 30 30 H 0.97002 * 120.00366 * 180.02562 * 11 10 8 31 31 H 1.09006 * 109.64318 * 62.53370 * 18 16 2 32 32 H 1.09002 * 109.50809 * 302.28687 * 18 16 2 33 33 H 1.09002 * 109.54484 * 297.03018 * 19 18 16 34 34 H 1.08999 * 109.54222 * 176.85184 * 19 18 16 35 35 H 1.09004 * 109.52253 * 62.88396 * 20 19 18 36 36 H 1.09000 * 109.52322 * 183.06877 * 20 19 18 37 37 H 1.09000 * 109.47857 * 177.59315 * 21 20 19 38 38 H 1.09000 * 109.48061 * 297.62689 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1471 1.1086 0.0000 4 7 1.4466 2.3220 -0.0005 5 6 2.1792 3.5906 -0.0011 6 1 3.1315 3.4601 -0.5148 7 6 2.4341 4.0330 1.4413 8 6 1.3647 4.6405 -0.7120 9 1 0.3983 4.3880 -1.1227 10 6 1.8534 5.9237 -0.8381 11 7 3.0304 6.2311 -0.3385 12 14 0.8442 7.2250 -1.7199 13 1 -0.4539 7.4026 -1.0207 14 1 1.5862 8.5114 -1.7193 15 1 0.5976 6.7957 -3.1199 16 6 2.2604 -1.3052 0.0006 17 1 1.9975 -1.8763 0.8910 18 6 3.7674 -1.0247 -0.0002 19 6 4.5238 -2.3553 -0.0615 20 6 4.0750 -3.1305 -1.3040 21 6 2.5579 -3.3286 -1.2518 22 8 1.9153 -2.0551 -1.1659 23 1 -0.3634 0.0001 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8899 -0.5138 26 1 0.4766 2.3220 -0.0005 27 1 1.4816 4.1635 1.9549 28 1 3.0231 3.2735 1.9554 29 1 2.9787 4.9771 1.4408 30 1 3.3741 7.1339 -0.4268 31 1 4.0413 -0.4916 0.9103 32 1 4.0245 -0.4192 -0.8693 33 1 4.3055 -2.9403 0.8320 34 1 5.5952 -2.1632 -0.1188 35 1 4.3383 -2.5674 -2.1994 36 1 4.5687 -4.1020 -1.3253 37 1 2.2272 -3.8424 -2.1545 38 1 2.2992 -3.9263 -0.3778 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863104023.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:26 Heat of formation + Delta-G solvation = -18.015909 kcal Electronic energy + Delta-G solvation = -17491.582743 eV Core-core repulsion = 14755.580256 eV Total energy + Delta-G solvation = -2736.002487 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.35716 -36.86889 -34.35886 -33.52800 -31.98361 -30.34694 -28.56362 -26.75600 -25.20730 -24.62709 -23.48966 -20.47489 -20.17844 -18.82623 -16.89857 -16.11394 -15.80656 -15.09399 -15.00198 -14.56410 -14.27530 -13.87390 -13.44167 -13.05889 -12.74582 -12.55404 -12.33725 -11.97729 -11.66232 -11.28057 -11.25354 -11.03876 -10.99026 -10.79098 -10.58810 -10.32631 -10.28673 -10.17792 -10.02075 -9.49519 -9.14479 -8.92213 -8.47436 -6.85128 -6.09911 -4.17658 2.81993 3.28092 3.32487 3.34552 3.74592 4.29437 4.48011 4.78967 4.86268 4.95176 5.08546 5.22376 5.28023 5.36946 5.52095 5.64373 5.71390 5.76929 5.90153 5.95065 5.96969 6.03736 6.14113 6.27087 6.55266 6.60290 6.80920 7.04240 7.09291 7.21173 7.40517 7.62721 7.84331 7.91990 8.22844 8.39001 8.91045 9.46559 9.49693 10.96030 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037812 B = 0.004887 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.333536 B = 5728.589753 C = 5921.579304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.011 4.011 3 N -0.193 5.193 4 N -0.631 5.631 5 C 0.298 3.702 6 H 0.039 0.961 7 C -0.149 4.149 8 C -0.529 4.529 9 H 0.058 0.942 10 C 0.067 3.933 11 N -0.887 5.887 12 Si 0.902 3.098 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.276 1.276 16 C 0.170 3.830 17 H 0.063 0.937 18 C -0.138 4.138 19 C -0.124 4.124 20 C -0.157 4.157 21 C 0.063 3.937 22 O -0.376 6.376 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.369 0.631 27 H 0.024 0.976 28 H 0.011 0.989 29 H 0.089 0.911 30 H 0.264 0.736 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.229 -16.367 1.129 16.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.204 4.204 3 N -0.007 5.007 4 N -0.369 5.369 5 C 0.196 3.804 6 H 0.057 0.943 7 C -0.209 4.209 8 C -0.568 4.568 9 H 0.076 0.924 10 C -0.136 4.136 11 N -0.525 5.525 12 Si 0.729 3.271 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.202 1.202 16 C 0.111 3.889 17 H 0.081 0.919 18 C -0.176 4.176 19 C -0.161 4.161 20 C -0.195 4.195 21 C -0.014 4.014 22 O -0.294 6.294 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.207 0.793 27 H 0.044 0.956 28 H 0.030 0.970 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.809 -15.574 1.002 15.627 hybrid contribution -1.516 0.457 -0.265 1.605 sum -0.706 -15.117 0.737 15.152 Atomic orbital electron populations 1.20941 0.93796 1.02782 1.01531 1.23438 0.93151 0.92244 1.11561 1.73374 1.28998 0.93346 1.04938 1.48981 1.06030 1.00066 1.81865 1.18467 0.92683 0.76507 0.92741 0.94266 1.22201 0.99092 1.01665 0.97916 1.21211 1.04508 0.94440 1.36650 0.92363 1.24851 0.95121 0.98202 0.95440 1.69880 1.17415 1.20330 1.44841 0.86500 0.79990 0.80442 0.80121 1.20203 1.21103 1.20197 1.20322 0.92739 0.88312 0.87553 0.91902 1.22043 0.94420 0.96782 1.04388 1.21640 1.00358 0.96669 0.97475 1.22201 0.96992 1.00757 0.99539 1.22512 0.91909 0.85525 1.01467 1.87968 1.67951 1.29683 1.43829 0.92080 0.92082 0.91173 0.79303 0.95649 0.96965 0.89294 0.92580 0.90422 0.90297 0.92193 0.91585 0.90998 0.91354 0.89200 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 9.49 36.01 0.34 -1.70 16 2 C -0.01 -0.20 6.76 -78.91 -0.53 -0.73 16 3 N -0.19 -4.06 10.16 35.60 0.36 -3.70 16 4 N -0.63 -14.44 5.93 -5.88 -0.03 -14.48 16 5 C 0.30 7.79 3.23 -69.08 -0.22 7.57 16 6 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 7 C -0.15 -3.74 9.29 37.16 0.35 -3.40 16 8 C -0.53 -14.50 8.74 -34.44 -0.30 -14.81 16 9 H 0.06 1.57 7.79 -52.48 -0.41 1.16 16 10 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 11 N -0.89 -25.02 11.32 55.43 0.63 -24.40 16 12 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 C 0.17 2.53 3.00 -27.74 -0.08 2.45 16 17 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 18 C -0.14 -2.00 4.67 -26.49 -0.12 -2.13 16 19 C -0.12 -1.37 6.02 -26.55 -0.16 -1.53 16 20 C -0.16 -1.61 6.14 -26.59 -0.16 -1.77 16 21 C 0.06 0.68 6.84 37.20 0.25 0.93 16 22 O -0.38 -5.55 10.14 -35.23 -0.36 -5.91 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.06 1.01 6.31 -51.92 -0.33 0.68 16 25 H 0.07 0.99 7.90 -51.93 -0.41 0.58 16 26 H 0.37 7.96 6.31 -182.60 -1.15 6.81 16 27 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.08 1.17 8.13 -51.93 -0.42 0.74 16 32 H 0.08 1.32 8.00 -51.93 -0.42 0.91 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 306.26 15.07 4.62 4.62 Total: -1.00 -28.95 306.26 -7.79 -36.74 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -7.24 Total: 4.47 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -0.74 Total: -13.39 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.95 Total: -42.57 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.36 Total: -5.91 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.95 -7.79 -36.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863104023.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.720 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds