Wall clock time and date at job start Mon Mar 30 2020 03:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.28008 * 120.00011 * 2 1 4 4 N 1.40106 * 120.00123 * 359.97438 * 3 2 1 5 5 C 1.46498 * 119.99644 * 180.02562 * 4 3 2 6 6 H 1.08992 * 109.47715 * 29.99774 * 5 4 3 7 7 C 1.53009 * 109.46906 * 269.99447 * 5 4 3 8 8 C 1.50697 * 109.46638 * 150.00097 * 5 4 3 9 9 H 1.08003 * 120.00429 * 359.97438 * 8 5 4 10 10 C 1.37887 * 119.99792 * 179.97438 * 8 5 4 11 11 N 1.31507 * 119.99806 * 0.02562 * 10 8 5 12 12 Si 1.86796 * 119.99925 * 179.97438 * 10 8 5 13 13 H 1.48508 * 109.47230 * 60.00432 * 12 10 8 14 14 H 1.48504 * 109.46866 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47502 * 300.00459 * 12 10 8 16 16 C 1.50700 * 119.99603 * 179.97438 * 2 1 3 17 17 H 1.09003 * 109.48275 * 299.97829 * 16 2 1 18 18 C 1.53280 * 109.45397 * 179.97438 * 16 2 1 19 19 C 1.53179 * 109.06328 * 182.44890 * 18 16 2 20 20 C 1.53177 * 109.10692 * 56.94222 * 19 18 16 21 21 C 1.53091 * 109.16264 * 302.97408 * 20 19 18 22 22 O 1.42901 * 109.47878 * 60.00484 * 16 2 1 23 23 H 1.08997 * 109.47698 * 270.00395 * 1 2 3 24 24 H 1.09009 * 109.46920 * 30.00371 * 1 2 3 25 25 H 1.08991 * 109.47262 * 149.99816 * 1 2 3 26 26 H 0.96996 * 119.99827 * 0.02562 * 4 3 2 27 27 H 1.08999 * 109.46843 * 300.00586 * 7 5 4 28 28 H 1.08996 * 109.46584 * 60.00369 * 7 5 4 29 29 H 1.08998 * 109.46761 * 180.02562 * 7 5 4 30 30 H 0.97002 * 120.00366 * 180.02562 * 11 10 8 31 31 H 1.09006 * 109.64318 * 62.53370 * 18 16 2 32 32 H 1.09002 * 109.50809 * 302.28687 * 18 16 2 33 33 H 1.09002 * 109.54484 * 297.03018 * 19 18 16 34 34 H 1.08999 * 109.54222 * 176.85184 * 19 18 16 35 35 H 1.09004 * 109.52253 * 62.88396 * 20 19 18 36 36 H 1.09000 * 109.52322 * 183.06877 * 20 19 18 37 37 H 1.09000 * 109.47857 * 177.59315 * 21 20 19 38 38 H 1.09000 * 109.48061 * 297.62689 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1471 1.1086 0.0000 4 7 1.4466 2.3220 -0.0005 5 6 2.1792 3.5906 -0.0011 6 1 3.1315 3.4601 -0.5148 7 6 2.4341 4.0330 1.4413 8 6 1.3647 4.6405 -0.7120 9 1 0.3983 4.3880 -1.1227 10 6 1.8534 5.9237 -0.8381 11 7 3.0304 6.2311 -0.3385 12 14 0.8442 7.2250 -1.7199 13 1 -0.4539 7.4026 -1.0207 14 1 1.5862 8.5114 -1.7193 15 1 0.5976 6.7957 -3.1199 16 6 2.2604 -1.3052 0.0006 17 1 1.9975 -1.8763 0.8910 18 6 3.7674 -1.0247 -0.0002 19 6 4.5238 -2.3553 -0.0615 20 6 4.0750 -3.1305 -1.3040 21 6 2.5579 -3.3286 -1.2518 22 8 1.9153 -2.0551 -1.1659 23 1 -0.3634 0.0001 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8899 -0.5138 26 1 0.4766 2.3220 -0.0005 27 1 1.4816 4.1635 1.9549 28 1 3.0231 3.2735 1.9554 29 1 2.9787 4.9771 1.4408 30 1 3.3741 7.1339 -0.4268 31 1 4.0413 -0.4916 0.9103 32 1 4.0245 -0.4192 -0.8693 33 1 4.3055 -2.9403 0.8320 34 1 5.5952 -2.1632 -0.1188 35 1 4.3383 -2.5674 -2.1994 36 1 4.5687 -4.1020 -1.3253 37 1 2.2272 -3.8424 -2.1545 38 1 2.2992 -3.9263 -0.3778 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863104023.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:26 Heat of formation + Delta-G solvation = -36.009430 kcal Electronic energy + Delta-G solvation = -17492.363001 eV Core-core repulsion = 14755.580256 eV Total energy + Delta-G solvation = -2736.782744 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.45883 -38.41686 -36.22277 -34.52263 -33.73125 -31.75702 -30.01826 -28.33826 -27.26166 -25.82449 -24.51360 -22.38588 -21.16027 -20.39318 -18.63455 -17.37538 -17.16688 -16.87632 -16.33916 -15.84082 -15.44524 -15.19958 -14.74160 -14.52161 -14.41732 -13.85695 -13.66144 -13.53355 -13.16003 -12.89222 -12.83585 -12.72981 -12.28850 -12.25014 -12.10446 -12.05189 -11.81544 -11.58095 -11.25006 -11.12427 -10.72478 -10.56809 -10.27159 -8.58214 -8.17393 -6.34276 1.38314 1.42834 1.44513 1.52437 2.18927 2.46338 3.11231 3.18259 3.68279 3.96367 4.00184 4.11350 4.23618 4.33502 4.40615 4.58913 4.64169 4.71585 4.76456 4.79733 4.91459 4.98342 4.99598 5.11670 5.13720 5.15478 5.24233 5.33495 5.42506 5.47659 5.57606 5.82174 5.90734 6.21680 6.36995 6.45658 6.86911 7.37416 7.86607 8.87637 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037812 B = 0.004887 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.333536 B = 5728.589753 C = 5921.579304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.014 3.986 3 N -0.238 5.238 4 N -0.646 5.646 5 C 0.308 3.692 6 H -0.004 1.004 7 C -0.134 4.134 8 C -0.549 4.549 9 H 0.058 0.942 10 C 0.020 3.980 11 N -0.914 5.914 12 Si 0.970 3.030 13 H -0.267 1.267 14 H -0.280 1.280 15 H -0.274 1.274 16 C 0.169 3.831 17 H 0.093 0.907 18 C -0.137 4.137 19 C -0.119 4.119 20 C -0.155 4.155 21 C 0.055 3.945 22 O -0.398 6.398 23 H 0.081 0.919 24 H 0.048 0.952 25 H 0.089 0.911 26 H 0.373 0.627 27 H 0.029 0.971 28 H 0.018 0.982 29 H 0.068 0.932 30 H 0.267 0.733 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.260 -18.350 1.221 18.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.181 4.181 3 N -0.049 5.049 4 N -0.386 5.386 5 C 0.204 3.796 6 H 0.014 0.986 7 C -0.193 4.193 8 C -0.588 4.588 9 H 0.076 0.924 10 C -0.181 4.181 11 N -0.552 5.552 12 Si 0.795 3.205 13 H -0.192 1.192 14 H -0.205 1.205 15 H -0.200 1.200 16 C 0.110 3.890 17 H 0.110 0.890 18 C -0.176 4.176 19 C -0.157 4.157 20 C -0.192 4.192 21 C -0.021 4.021 22 O -0.317 6.317 23 H 0.100 0.900 24 H 0.067 0.933 25 H 0.108 0.892 26 H 0.211 0.789 27 H 0.048 0.952 28 H 0.037 0.963 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.125 0.875 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.223 -17.579 1.095 17.614 hybrid contribution -1.185 0.846 -0.308 1.488 sum -1.408 -16.733 0.787 16.811 Atomic orbital electron populations 1.21016 0.92095 1.03088 1.02935 1.24340 0.94913 0.92629 1.06198 1.73453 1.29473 0.93508 1.08461 1.48518 1.05765 1.00024 1.84260 1.18066 0.91000 0.78069 0.92456 0.98561 1.22000 0.98971 1.00651 0.97701 1.21492 1.04728 0.95303 1.37260 0.92378 1.25704 0.96152 1.00228 0.95995 1.70008 1.18767 1.20874 1.45578 0.85436 0.78665 0.77639 0.78804 1.19207 1.20483 1.19954 1.20407 0.92259 0.87319 0.89011 0.88977 1.21985 0.95098 0.98299 1.02176 1.21633 1.00116 0.94935 0.98998 1.22202 0.97077 1.01800 0.98169 1.22825 0.91854 0.83952 1.03431 1.87916 1.68697 1.31498 1.43560 0.90024 0.93328 0.89188 0.78854 0.95178 0.96330 0.91362 0.92398 0.91657 0.93710 0.90041 0.91146 0.92732 0.88379 0.87500 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.89 9.49 71.24 0.68 -3.22 16 2 C 0.01 0.47 6.76 46.53 0.31 0.79 16 3 N -0.24 -10.25 10.16 -41.20 -0.42 -10.67 16 4 N -0.65 -30.49 5.93 -172.52 -1.02 -31.52 16 5 C 0.31 16.75 3.23 44.25 0.14 16.89 16 6 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 7 C -0.13 -6.92 9.29 71.99 0.67 -6.25 16 8 C -0.55 -30.83 8.74 25.60 0.22 -30.61 16 9 H 0.06 3.18 7.79 -2.91 -0.02 3.16 16 10 C 0.02 1.08 5.30 84.66 0.45 1.53 16 11 N -0.91 -52.75 11.32 21.45 0.24 -52.51 16 12 Si 0.97 43.41 29.54 68.60 2.03 45.44 16 13 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 14 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 15 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 16 C 0.17 4.75 3.00 29.94 0.09 4.84 16 17 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 18 C -0.14 -3.93 4.67 30.75 0.14 -3.78 16 19 C -0.12 -2.39 6.02 30.71 0.18 -2.21 16 20 C -0.15 -2.75 6.14 30.68 0.19 -2.56 16 21 C 0.06 1.01 6.84 72.01 0.49 1.50 16 22 O -0.40 -10.84 10.14 -148.98 -1.51 -12.35 16 23 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.05 1.57 6.31 -2.38 -0.02 1.56 16 25 H 0.09 2.31 7.90 -2.39 -0.02 2.29 16 26 H 0.37 16.42 6.31 -213.32 -1.35 15.07 16 27 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 30 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 31 H 0.06 1.98 8.13 -2.38 -0.02 1.96 16 32 H 0.04 1.56 8.00 -2.39 -0.02 1.54 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -64.07 306.26 2.57 -61.50 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -0.32 Total: 23.19 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: 3.57 Total: -23.08 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -1.20 Total: -94.69 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -1.51 Total: -12.35 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -64.07 2.57 -61.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863104023.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.491 kcal (2) G-P(sol) polarization free energy of solvation -64.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds