Wall clock time and date at job start Mon Mar 30 2020 05:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31507 * 119.99923 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99701 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46840 * 90.00760 * 9 7 5 11 11 H 1.48504 * 109.46912 * 209.99808 * 9 7 5 12 12 H 1.48497 * 109.47580 * 330.00471 * 9 7 5 13 13 N 1.46904 * 109.47486 * 295.00613 * 3 2 1 14 14 C 1.46849 * 110.99536 * 299.20813 * 13 3 2 15 15 C 1.53029 * 109.52376 * 174.16168 * 14 13 3 16 16 C 1.53117 * 109.28119 * 59.17293 * 15 14 13 17 17 C 1.53003 * 109.52465 * 182.44116 * 16 15 14 18 18 C 1.53004 * 109.47130 * 294.68556 * 17 16 15 19 19 N 1.46902 * 109.47058 * 179.97438 * 18 17 16 20 20 C 1.53115 * 109.16553 * 302.34799 * 16 15 14 21 21 C 1.46837 * 111.00159 * 174.99909 * 13 3 2 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 0.97005 * 119.99936 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.45936 * 294.17556 * 14 13 3 29 29 H 1.08996 * 109.46599 * 54.13797 * 14 13 3 30 30 H 1.09003 * 109.50038 * 299.23377 * 15 14 13 31 31 H 1.09000 * 109.50886 * 179.11864 * 15 14 13 32 32 H 1.09004 * 109.51770 * 62.25519 * 16 15 14 33 33 H 1.08997 * 109.47279 * 54.68381 * 17 16 15 34 34 H 1.08998 * 109.47099 * 174.68719 * 17 16 15 35 35 H 1.08997 * 109.46896 * 300.00059 * 18 17 16 36 36 H 1.08998 * 109.46997 * 60.00100 * 18 17 16 37 37 H 1.00904 * 110.99671 * 56.04654 * 19 18 17 38 38 H 1.00894 * 110.99919 * 179.97438 * 19 18 17 39 39 H 1.08992 * 109.50115 * 297.71560 * 20 16 15 40 40 H 1.08997 * 109.50599 * 177.59172 * 20 16 15 41 41 H 1.09001 * 109.46536 * 305.84549 * 21 13 3 42 42 H 1.08996 * 109.46864 * 65.82424 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4539 0.8804 1.3362 9 14 3.0964 0.1099 2.5706 10 1 2.8747 -1.3262 2.2643 11 1 3.7942 0.2357 3.8754 12 1 1.7881 0.8091 2.6394 13 7 1.6513 2.0994 -1.2552 14 6 2.2354 1.4099 -2.4127 15 6 1.6947 2.0294 -3.7033 16 6 2.0524 3.5178 -3.7382 17 6 1.4621 4.1562 -4.9972 18 6 2.1327 3.5572 -6.2352 19 7 1.5655 4.1697 -7.4439 20 6 1.4734 4.2031 -2.4975 21 6 2.0206 3.5205 -1.2417 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 5.8770 0.4826 2.1132 28 1 3.3203 1.5127 -2.3872 29 1 1.9701 0.3533 -2.3780 30 1 0.6113 1.9146 -3.7360 31 1 2.1404 1.5278 -4.5624 32 1 3.1364 3.6318 -3.7449 33 1 0.3902 3.9618 -5.0348 34 1 1.6357 5.2320 -4.9746 35 1 3.2045 3.7516 -6.1976 36 1 1.9591 2.4814 -6.2577 37 1 1.6560 5.1743 -7.4168 38 1 1.9926 3.7908 -8.2758 39 1 0.3866 4.1225 -2.5111 40 1 1.7610 5.2545 -2.4948 41 1 1.5991 3.9970 -0.3566 42 1 3.1064 3.6135 -1.2218 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069729914.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:43 Heat of formation + Delta-G solvation = -15.386149 kcal Electronic energy + Delta-G solvation = -18444.733356 eV Core-core repulsion = 15844.677999 eV Total energy + Delta-G solvation = -2600.055357 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -38.88367 -36.32986 -34.26572 -32.10252 -31.47841 -30.15946 -28.29335 -26.42288 -23.54453 -22.60095 -22.37189 -20.76687 -19.67499 -18.97644 -16.65844 -16.00946 -15.69123 -14.90632 -14.34699 -14.16824 -14.12219 -13.71604 -13.33712 -13.05843 -12.74042 -12.48661 -12.21405 -11.83643 -11.67569 -11.46351 -11.32797 -11.19226 -10.88708 -10.66431 -10.49113 -10.39346 -10.09319 -9.89309 -9.64349 -9.52917 -9.36515 -9.16715 -8.83450 -8.55238 -7.08681 -6.10903 -4.11008 3.26390 3.37501 3.39954 4.38459 4.43071 4.91238 4.95169 5.10318 5.20964 5.31841 5.41395 5.55945 5.66140 5.85340 5.92795 5.98827 6.05160 6.07998 6.12960 6.16262 6.19877 6.24394 6.39085 6.46941 6.52512 6.57457 6.66007 6.71856 6.79657 6.86297 6.94984 6.98171 7.00869 7.14366 7.26950 7.29121 7.60069 8.16394 8.23980 8.47232 8.91788 9.53231 11.02016 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.035548 B = 0.006089 C = 0.005740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.485725 B = 4597.703020 C = 4877.172288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C 0.180 3.820 4 H 0.037 0.963 5 C -0.542 4.542 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.900 5.900 9 Si 0.887 3.113 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.525 5.525 14 C 0.058 3.942 15 C -0.109 4.109 16 C -0.086 4.086 17 C -0.109 4.109 18 C 0.057 3.943 19 N -0.854 5.854 20 C -0.107 4.107 21 C 0.063 3.937 22 H 0.041 0.959 23 H 0.032 0.968 24 H 0.062 0.938 25 H 0.046 0.954 26 H 0.059 0.941 27 H 0.263 0.737 28 H 0.041 0.959 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.024 0.976 36 H 0.075 0.925 37 H 0.337 0.663 38 H 0.338 0.662 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.701 4.464 -10.985 14.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C 0.072 3.928 4 H 0.055 0.945 5 C -0.581 4.581 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.189 1.189 13 N -0.249 5.249 14 C -0.071 4.071 15 C -0.147 4.147 16 C -0.105 4.105 17 C -0.147 4.147 18 C -0.073 4.073 19 N -0.383 5.383 20 C -0.145 4.145 21 C -0.066 4.066 22 H 0.060 0.940 23 H 0.051 0.949 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.042 0.958 36 H 0.093 0.907 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.752 4.064 -10.665 14.382 hybrid contribution 1.628 -0.147 0.762 1.804 sum -7.124 3.916 -9.903 12.812 Atomic orbital electron populations 1.21733 0.97380 0.99289 1.01667 1.21954 0.94051 0.99417 1.00597 1.19708 0.94432 0.90467 0.88166 0.94481 1.21636 0.90716 1.38736 1.06980 0.90689 1.24985 0.94708 0.95376 0.97870 1.69918 1.08859 1.45242 1.29731 0.86852 0.80727 0.79821 0.80826 1.20573 1.22673 1.18861 1.62307 1.57991 1.01405 1.03166 1.21953 0.97704 0.97920 0.89498 1.21696 1.01109 0.94518 0.97383 1.21161 0.99778 0.95760 0.93802 1.21602 1.00772 0.99169 0.93177 1.21908 0.95721 0.99808 0.89851 1.58772 1.64805 1.10133 1.04560 1.21626 1.00649 0.97889 0.94376 1.21848 0.98850 0.89648 0.96261 0.93982 0.94866 0.91919 0.93613 0.92212 0.92726 0.94101 0.91364 0.91869 0.92653 0.91788 0.91297 0.92696 0.95753 0.90679 0.85104 0.85021 0.91842 0.92706 0.91978 0.94136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.80 37.16 0.36 -2.27 16 2 C -0.12 -2.66 4.72 -26.73 -0.13 -2.79 16 3 C 0.18 4.19 1.34 -68.86 -0.09 4.09 16 4 H 0.04 0.91 7.14 -51.93 -0.37 0.54 16 5 C -0.54 -14.77 7.77 -34.44 -0.27 -15.03 16 6 H 0.08 2.23 6.08 -52.49 -0.32 1.92 16 7 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 8 N -0.90 -27.29 13.96 55.43 0.77 -26.51 16 9 Si 0.89 21.96 24.41 -169.99 -4.15 17.81 16 10 H -0.28 -6.76 6.83 56.52 0.39 -6.37 16 11 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.26 -6.28 6.53 56.52 0.37 -5.91 16 13 N -0.52 -10.56 4.10 -228.08 -0.93 -11.50 16 14 C 0.06 1.09 4.80 -3.84 -0.02 1.07 16 15 C -0.11 -1.65 5.08 -26.66 -0.14 -1.79 16 16 C -0.09 -1.22 2.25 -90.50 -0.20 -1.42 16 17 C -0.11 -1.30 4.95 -26.73 -0.13 -1.43 16 18 C 0.06 0.63 6.55 -3.82 -0.03 0.61 16 19 N -0.85 -8.23 9.62 -10.37 -0.10 -8.33 16 20 C -0.11 -1.62 5.38 -26.65 -0.14 -1.76 16 21 C 0.06 1.18 5.12 -3.83 -0.02 1.16 16 22 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 1.11 7.75 -51.93 -0.40 0.71 16 25 H 0.05 1.06 3.22 -51.93 -0.17 0.89 16 26 H 0.06 1.28 6.05 -51.93 -0.31 0.96 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.04 0.88 6.62 -51.93 -0.34 0.54 16 29 H 0.07 1.31 5.93 -51.93 -0.31 1.00 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.76 6.71 -51.93 -0.35 0.41 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.87 6.64 -51.93 -0.34 0.52 16 37 H 0.34 2.81 8.99 -39.29 -0.35 2.46 16 38 H 0.34 2.68 9.08 -39.29 -0.36 2.33 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 42 H 0.04 0.87 6.96 -51.93 -0.36 0.51 16 LS Contribution 306.59 15.07 4.62 4.62 Total: -1.00 -29.13 306.59 -8.08 -37.21 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -7.40 Total: 4.27 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -0.90 Total: -17.58 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -0.26 Total: -46.34 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.15 Total: 17.81 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.13 -8.08 -37.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069729914.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.825 kcal (2) G-P(sol) polarization free energy of solvation -29.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds