Wall clock time and date at job start Mon Mar 30 2020 05:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31507 * 119.99923 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99701 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46840 * 90.00760 * 9 7 5 11 11 H 1.48504 * 109.46912 * 209.99808 * 9 7 5 12 12 H 1.48497 * 109.47580 * 330.00471 * 9 7 5 13 13 N 1.46904 * 109.47486 * 295.00613 * 3 2 1 14 14 C 1.46849 * 110.99536 * 299.20813 * 13 3 2 15 15 C 1.53029 * 109.52376 * 174.16168 * 14 13 3 16 16 C 1.53117 * 109.28119 * 59.17293 * 15 14 13 17 17 C 1.53003 * 109.52465 * 182.44116 * 16 15 14 18 18 C 1.53004 * 109.47130 * 294.68556 * 17 16 15 19 19 N 1.46902 * 109.47058 * 179.97438 * 18 17 16 20 20 C 1.53115 * 109.16553 * 302.34799 * 16 15 14 21 21 C 1.46837 * 111.00159 * 174.99909 * 13 3 2 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 0.97005 * 119.99936 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.45936 * 294.17556 * 14 13 3 29 29 H 1.08996 * 109.46599 * 54.13797 * 14 13 3 30 30 H 1.09003 * 109.50038 * 299.23377 * 15 14 13 31 31 H 1.09000 * 109.50886 * 179.11864 * 15 14 13 32 32 H 1.09004 * 109.51770 * 62.25519 * 16 15 14 33 33 H 1.08997 * 109.47279 * 54.68381 * 17 16 15 34 34 H 1.08998 * 109.47099 * 174.68719 * 17 16 15 35 35 H 1.08997 * 109.46896 * 300.00059 * 18 17 16 36 36 H 1.08998 * 109.46997 * 60.00100 * 18 17 16 37 37 H 1.00904 * 110.99671 * 56.04654 * 19 18 17 38 38 H 1.00894 * 110.99919 * 179.97438 * 19 18 17 39 39 H 1.08992 * 109.50115 * 297.71560 * 20 16 15 40 40 H 1.08997 * 109.50599 * 177.59172 * 20 16 15 41 41 H 1.09001 * 109.46536 * 305.84549 * 21 13 3 42 42 H 1.08996 * 109.46864 * 65.82424 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4539 0.8804 1.3362 9 14 3.0964 0.1099 2.5706 10 1 2.8747 -1.3262 2.2643 11 1 3.7942 0.2357 3.8754 12 1 1.7881 0.8091 2.6394 13 7 1.6513 2.0994 -1.2552 14 6 2.2354 1.4099 -2.4127 15 6 1.6947 2.0294 -3.7033 16 6 2.0524 3.5178 -3.7382 17 6 1.4621 4.1562 -4.9972 18 6 2.1327 3.5572 -6.2352 19 7 1.5655 4.1697 -7.4439 20 6 1.4734 4.2031 -2.4975 21 6 2.0206 3.5205 -1.2417 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 5.8770 0.4826 2.1132 28 1 3.3203 1.5127 -2.3872 29 1 1.9701 0.3533 -2.3780 30 1 0.6113 1.9146 -3.7360 31 1 2.1404 1.5278 -4.5624 32 1 3.1364 3.6318 -3.7449 33 1 0.3902 3.9618 -5.0348 34 1 1.6357 5.2320 -4.9746 35 1 3.2045 3.7516 -6.1976 36 1 1.9591 2.4814 -6.2577 37 1 1.6560 5.1743 -7.4168 38 1 1.9926 3.7908 -8.2758 39 1 0.3866 4.1225 -2.5111 40 1 1.7610 5.2545 -2.4948 41 1 1.5991 3.9970 -0.3566 42 1 3.1064 3.6135 -1.2218 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069729914.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:42 Heat of formation + Delta-G solvation = -36.573705 kcal Electronic energy + Delta-G solvation = -18445.652117 eV Core-core repulsion = 15844.677999 eV Total energy + Delta-G solvation = -2600.974118 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.36801 -37.66188 -35.53370 -34.13271 -32.87900 -31.59416 -29.72062 -28.05653 -25.02207 -24.06259 -23.90737 -21.97064 -21.21326 -20.58642 -18.63459 -17.47739 -16.81787 -16.20633 -15.93739 -15.70437 -15.28131 -15.12929 -14.82578 -14.62758 -14.39908 -13.92356 -13.77267 -13.46099 -13.05686 -12.95894 -12.79911 -12.58517 -12.33966 -12.10946 -12.05397 -11.95104 -11.60249 -11.49363 -11.34949 -11.22117 -10.91702 -10.83473 -10.65774 -9.59673 -8.87485 -8.32755 -6.36432 1.28422 1.33905 1.44564 2.29552 3.02928 3.32315 3.59711 3.87757 3.95923 4.18093 4.28410 4.35939 4.41507 4.48597 4.51401 4.64765 4.66512 4.69212 4.72889 4.82977 4.93694 4.98459 5.05227 5.11436 5.12771 5.18368 5.23521 5.26673 5.32383 5.35794 5.40571 5.49343 5.52486 5.61493 5.67801 6.17054 6.24986 6.42500 6.56572 6.62625 6.72691 7.31997 8.83878 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.035548 B = 0.006089 C = 0.005740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.485725 B = 4597.703020 C = 4877.172288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.123 4.123 3 C 0.182 3.818 4 H 0.029 0.971 5 C -0.536 4.536 6 H 0.032 0.968 7 C 0.015 3.985 8 N -0.949 5.949 9 Si 0.948 3.052 10 H -0.267 1.267 11 H -0.301 1.301 12 H -0.246 1.246 13 N -0.514 5.514 14 C 0.060 3.940 15 C -0.099 4.099 16 C -0.083 4.083 17 C -0.097 4.097 18 C 0.060 3.940 19 N -0.857 5.857 20 C -0.097 4.097 21 C 0.060 3.940 22 H 0.044 0.956 23 H 0.057 0.943 24 H 0.069 0.931 25 H 0.033 0.967 26 H 0.057 0.943 27 H 0.264 0.736 28 H 0.001 0.999 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.021 0.979 36 H 0.070 0.930 37 H 0.345 0.655 38 H 0.348 0.652 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.516 4.504 -11.950 16.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.160 4.160 3 C 0.073 3.927 4 H 0.047 0.953 5 C -0.574 4.574 6 H 0.051 0.949 7 C -0.183 4.183 8 N -0.590 5.590 9 Si 0.776 3.224 10 H -0.193 1.193 11 H -0.230 1.230 12 H -0.169 1.169 13 N -0.237 5.237 14 C -0.068 4.068 15 C -0.137 4.137 16 C -0.102 4.102 17 C -0.135 4.135 18 C -0.071 4.071 19 N -0.388 5.388 20 C -0.135 4.135 21 C -0.068 4.068 22 H 0.063 0.937 23 H 0.076 0.924 24 H 0.088 0.912 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.020 0.980 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.039 0.961 36 H 0.088 0.912 37 H 0.158 0.842 38 H 0.161 0.839 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -11.590 4.114 -11.660 16.947 hybrid contribution 2.585 -0.101 0.985 2.768 sum -9.005 4.013 -10.675 14.531 Atomic orbital electron populations 1.21643 0.94167 1.01129 1.02179 1.21877 0.96856 0.97430 0.99887 1.19617 0.91380 0.92139 0.89540 0.95344 1.21887 0.92932 1.37140 1.05487 0.94930 1.25830 0.95737 0.96229 1.00485 1.70069 1.10898 1.47204 1.30818 0.85852 0.79598 0.79583 0.77404 1.19293 1.22956 1.16942 1.62376 1.57188 1.01860 1.02281 1.21973 0.95446 0.98310 0.91091 1.21631 1.01604 0.95026 0.95411 1.21109 0.98915 0.95286 0.94882 1.21457 1.00537 0.99565 0.91951 1.21813 0.95536 0.99581 0.90173 1.58736 1.64747 1.10835 1.04439 1.21565 1.01125 0.98430 0.92393 1.21923 0.96755 0.89455 0.98679 0.93696 0.92394 0.91171 0.94874 0.92444 0.92724 0.98032 0.91499 0.90635 0.91089 0.93488 0.91082 0.91611 0.96060 0.91154 0.84175 0.83889 0.90501 0.90911 0.92167 0.97859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 9.80 71.98 0.71 -3.78 16 2 C -0.12 -5.16 4.72 30.59 0.14 -5.01 16 3 C 0.18 8.47 1.34 44.17 0.06 8.53 16 4 H 0.03 1.39 7.14 -2.38 -0.02 1.37 16 5 C -0.54 -30.37 7.77 25.60 0.20 -30.17 16 6 H 0.03 2.08 6.08 -2.91 -0.02 2.06 16 7 C 0.01 0.86 5.45 84.66 0.46 1.32 16 8 N -0.95 -59.94 13.96 21.45 0.30 -59.65 16 9 Si 0.95 45.55 24.41 68.60 1.67 47.22 16 10 H -0.27 -12.23 6.83 99.48 0.68 -11.55 16 11 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 12 H -0.25 -10.97 6.53 99.48 0.65 -10.32 16 13 N -0.51 -20.60 4.10 -875.52 -3.59 -24.18 16 14 C 0.06 2.29 4.80 86.32 0.41 2.71 16 15 C -0.10 -2.85 5.08 30.64 0.16 -2.69 16 16 C -0.08 -2.23 2.25 -10.72 -0.02 -2.25 16 17 C -0.10 -2.05 4.95 30.60 0.15 -1.89 16 18 C 0.06 1.18 6.55 86.30 0.57 1.74 16 19 N -0.86 -14.29 9.62 -186.71 -1.80 -16.09 16 20 C -0.10 -2.78 5.38 30.65 0.16 -2.61 16 21 C 0.06 2.31 5.12 86.33 0.44 2.76 16 22 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.07 2.24 7.75 -2.38 -0.02 2.22 16 25 H 0.03 1.47 3.22 -2.39 -0.01 1.47 16 26 H 0.06 2.41 6.05 -2.39 -0.01 2.39 16 27 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 28 H 0.00 0.06 6.62 -2.39 -0.02 0.05 16 29 H 0.07 2.54 5.93 -2.39 -0.01 2.53 16 30 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.07 1.84 6.71 -2.39 -0.02 1.82 16 32 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.07 1.46 6.64 -2.39 -0.02 1.44 16 37 H 0.35 4.83 8.99 -89.69 -0.81 4.03 16 38 H 0.35 4.70 9.08 -89.70 -0.81 3.88 16 39 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.06 2.29 8.08 -2.39 -0.02 2.27 16 42 H 0.00 0.14 6.96 -2.39 -0.02 0.12 16 Total: -1.00 -64.94 306.59 -0.68 -65.62 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -0.70 Total: 18.42 kcal Atomic # 6 Polarization: -34.78 SS G_CDS: 3.44 Total: -31.34 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -5.08 Total: -99.92 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.67 Total: 47.22 kcal Total: -64.94 -0.68 -65.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069729914.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.046 kcal (2) G-P(sol) polarization free energy of solvation -64.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds