Wall clock time and date at job start Mon Mar 30 2020 04:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52995 * 109.47536 * 2 1 4 4 C 1.53000 * 109.47378 * 239.99506 * 2 1 3 5 5 N 1.46909 * 109.47130 * 119.99967 * 2 1 3 6 6 C 1.46899 * 110.99720 * 59.99797 * 5 2 1 7 7 C 1.53002 * 109.47065 * 180.02562 * 6 5 2 8 8 H 1.08998 * 109.49615 * 54.93184 * 7 6 5 9 9 C 1.53039 * 109.49832 * 175.00062 * 7 6 5 10 10 C 1.53040 * 109.52506 * 181.35246 * 9 7 6 11 11 C 1.53186 * 109.31541 * 298.61451 * 10 9 7 12 12 N 1.46925 * 108.76646 * 54.65399 * 11 10 9 13 13 C 1.36938 * 120.63150 * 126.40670 * 12 11 10 14 14 H 1.07996 * 120.00218 * 331.83240 * 13 12 11 15 15 C 1.38814 * 119.99984 * 151.82799 * 13 12 11 16 16 N 1.31613 * 120.00261 * 343.07216 * 15 13 12 17 17 Si 1.86804 * 119.99792 * 163.06949 * 15 13 12 18 18 H 1.48494 * 109.47217 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46899 * 120.00296 * 17 15 13 20 20 H 1.48502 * 109.46993 * 240.00075 * 17 15 13 21 21 C 1.46934 * 118.73747 * 306.38569 * 12 11 10 22 22 H 1.08999 * 109.47525 * 300.00598 * 1 2 3 23 23 H 1.09008 * 109.47209 * 59.99639 * 1 2 3 24 24 H 1.08998 * 109.47470 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47470 * 179.97438 * 3 2 1 26 26 H 1.09006 * 109.47147 * 299.99606 * 3 2 1 27 27 H 1.08998 * 109.47492 * 59.99664 * 3 2 1 28 28 H 1.08998 * 109.47268 * 300.00672 * 4 2 1 29 29 H 1.09010 * 109.46757 * 60.00146 * 4 2 1 30 30 H 1.08997 * 109.47854 * 180.02562 * 4 2 1 31 31 H 1.00893 * 110.99819 * 296.04568 * 5 2 1 32 32 H 1.08998 * 109.47114 * 60.00214 * 6 5 2 33 33 H 1.09002 * 109.47240 * 300.00097 * 6 5 2 34 34 H 1.08994 * 109.45664 * 301.36692 * 9 7 6 35 35 H 1.08996 * 109.46235 * 61.34072 * 9 7 6 36 36 H 1.08997 * 109.49641 * 58.57717 * 10 9 7 37 37 H 1.08997 * 109.49829 * 178.67291 * 10 9 7 38 38 H 1.09002 * 109.59672 * 294.86971 * 11 10 9 39 39 H 1.08998 * 109.70903 * 174.50260 * 11 10 9 40 40 H 0.97004 * 120.00436 * 179.97438 * 16 15 13 41 41 H 1.08999 * 109.58710 * 293.81870 * 21 12 11 42 42 H 1.09005 * 109.70034 * 173.46270 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0196 -0.6925 1.1995 6 6 1.5485 -2.0835 1.2334 7 6 2.0770 -2.7704 2.4943 8 1 1.7888 -2.1916 3.3718 9 6 1.4865 -4.1787 2.5946 10 6 1.9882 -4.8539 3.8730 11 6 3.5145 -4.9728 3.8178 12 7 4.0839 -3.6401 3.5762 13 6 5.0437 -3.1300 4.4091 14 1 5.0784 -3.4359 5.4442 15 6 5.9720 -2.2196 3.9230 16 7 6.1536 -2.0941 2.6255 17 14 6.9636 -1.1725 5.1104 18 1 6.5747 -1.5026 6.5049 19 1 8.4109 -1.4469 4.9224 20 1 6.6939 0.2640 4.8476 21 6 3.6044 -2.8653 2.4235 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8901 27 1 1.6767 1.9563 0.8899 28 1 1.6766 -1.7490 -1.2492 29 1 1.6766 -0.2075 -2.1392 30 1 3.1299 -0.7218 -1.2490 31 1 1.7502 -0.1990 2.0372 32 1 1.9120 -2.6118 0.3520 33 1 0.4586 -2.0979 1.2420 34 1 0.3987 -4.1152 2.6203 35 1 1.7957 -4.7646 1.7291 36 1 1.7008 -4.2553 4.7374 37 1 1.5488 -5.8479 3.9560 38 1 3.7998 -5.6443 3.0080 39 1 3.8873 -5.3631 4.7647 40 1 6.8020 -1.4577 2.2857 41 1 3.8970 -3.3650 1.5000 42 1 4.0343 -1.8640 2.4492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082646055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:59 Heat of formation + Delta-G solvation = 2.991704 kcal Electronic energy + Delta-G solvation = -18566.597048 eV Core-core repulsion = 15967.338614 eV Total energy + Delta-G solvation = -2599.258434 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.51631 -37.05065 -33.36620 -32.14714 -29.92952 -28.96304 -27.28653 -27.17386 -25.11285 -24.15333 -21.90266 -20.52922 -19.12902 -18.70153 -16.56302 -15.48353 -14.98764 -14.59580 -14.25953 -13.97427 -13.66519 -13.44436 -13.17109 -12.70563 -12.59017 -12.20361 -12.07422 -11.87284 -11.66399 -11.55579 -11.31081 -10.99516 -10.87453 -10.79622 -10.57661 -10.48196 -10.31891 -10.09647 -9.87834 -9.73716 -9.35844 -9.20812 -8.32708 -7.87179 -6.50254 -5.63412 -3.06241 3.45071 3.52536 3.54675 4.45590 4.60744 4.98899 5.09612 5.32031 5.37749 5.53340 5.62851 5.66667 5.72598 5.74599 5.76990 5.86044 5.90974 5.92595 6.02282 6.06445 6.13005 6.18393 6.33974 6.41650 6.43086 6.47422 6.54416 6.58354 6.65963 6.85786 6.91812 7.05606 7.13824 7.50713 7.66243 7.84257 7.89706 8.05571 8.62484 9.37157 10.01134 10.58534 11.43729 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018904 B = 0.008401 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.804169 B = 3331.951113 C = 4420.057174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.104 3.896 3 C -0.137 4.137 4 C -0.138 4.138 5 N -0.667 5.667 6 C 0.069 3.931 7 C -0.111 4.111 8 H 0.058 0.942 9 C -0.103 4.103 10 C -0.132 4.132 11 C 0.144 3.856 12 N -0.595 5.595 13 C -0.254 4.254 14 H 0.062 0.938 15 C 0.005 3.995 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.279 1.279 19 H -0.292 1.292 20 H -0.289 1.289 21 C 0.189 3.811 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.337 0.663 32 H 0.069 0.931 33 H 0.018 0.982 34 H 0.040 0.960 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.046 0.954 38 H 0.014 0.986 39 H 0.049 0.951 40 H 0.252 0.748 41 H 0.010 0.990 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.371 2.505 -5.137 12.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.013 3.987 3 C -0.195 4.195 4 C -0.195 4.195 5 N -0.298 5.298 6 C -0.061 4.061 7 C -0.132 4.132 8 H 0.077 0.923 9 C -0.141 4.141 10 C -0.172 4.172 11 C 0.017 3.983 12 N -0.317 5.317 13 C -0.384 4.384 14 H 0.080 0.920 15 C -0.194 4.194 16 N -0.538 5.538 17 Si 0.727 3.273 18 H -0.205 1.205 19 H -0.219 1.219 20 H -0.216 1.216 21 C 0.063 3.937 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.156 0.844 32 H 0.088 0.912 33 H 0.036 0.964 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.032 0.968 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.029 0.971 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.611 2.447 -5.495 12.197 hybrid contribution -0.499 0.667 0.778 1.140 sum -11.109 3.115 -4.717 12.465 Atomic orbital electron populations 1.22573 0.97972 1.01824 1.01560 1.20918 0.91408 0.94325 0.92056 1.21805 1.02346 0.94457 1.00902 1.21859 1.02404 0.99819 0.95467 1.60556 1.63104 1.02445 1.03646 1.22028 0.95471 0.89062 0.99498 1.21863 1.01359 0.94258 0.95721 0.92331 1.21397 0.97817 0.96821 0.98040 1.21986 0.99116 0.98561 0.97512 1.20894 0.90650 0.88592 0.98171 1.44134 1.43819 1.12470 1.31307 1.19170 1.05845 1.22535 0.90817 0.92035 1.25011 0.97069 1.01800 0.95509 1.70045 1.35904 1.36956 1.10886 0.86308 0.79668 0.80602 0.80677 1.20454 1.21905 1.21602 1.20717 0.86437 0.98731 0.87805 0.93022 0.92662 0.92440 0.91485 0.92780 0.93066 0.92718 0.93089 0.91434 0.84431 0.91240 0.96383 0.94172 0.92914 0.92643 0.93487 0.96828 0.93204 0.93823 0.97143 0.88222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 8.23 37.15 0.31 -1.80 16 2 C 0.10 1.40 0.97 -131.60 -0.13 1.28 16 3 C -0.14 -1.72 8.73 37.15 0.32 -1.40 16 4 C -0.14 -1.85 8.24 37.16 0.31 -1.54 16 5 N -0.67 -10.86 5.66 -99.97 -0.57 -11.43 16 6 C 0.07 1.13 4.29 -3.82 -0.02 1.12 16 7 C -0.11 -2.16 2.48 -90.50 -0.22 -2.38 16 8 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 9 C -0.10 -1.80 5.17 -26.69 -0.14 -1.94 16 10 C -0.13 -2.42 6.08 -26.61 -0.16 -2.58 16 11 C 0.14 3.17 6.52 -3.71 -0.02 3.14 16 12 N -0.59 -15.47 2.99 -172.32 -0.52 -15.99 16 13 C -0.25 -7.20 9.58 -15.06 -0.14 -7.34 16 14 H 0.06 1.73 7.88 -52.49 -0.41 1.31 16 15 C 0.01 0.15 4.92 -17.43 -0.09 0.06 16 16 N -0.89 -26.57 11.19 55.49 0.62 -25.95 16 17 Si 0.90 22.24 29.59 -169.99 -5.03 17.22 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 21 C 0.19 4.61 4.41 -3.71 -0.02 4.59 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 24 H 0.06 0.69 6.41 -51.93 -0.33 0.36 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.74 6.40 -51.93 -0.33 0.41 16 29 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.34 5.40 8.72 -39.30 -0.34 5.06 16 32 H 0.07 1.19 6.30 -51.93 -0.33 0.86 16 33 H 0.02 0.27 6.30 -51.93 -0.33 -0.06 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.05 1.08 7.93 -51.93 -0.41 0.66 16 40 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.10 2.74 5.85 -51.93 -0.30 2.44 16 LS Contribution 318.46 15.07 4.80 4.80 Total: -1.00 -29.64 318.46 -8.54 -38.17 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.85 Total: 1.97 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 0.00 Total: -8.79 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.46 Total: -53.36 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.64 -8.54 -38.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082646055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.165 kcal (2) G-P(sol) polarization free energy of solvation -29.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds