Wall clock time and date at job start Mon Mar 30 2020 04:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52995 * 109.47536 * 2 1 4 4 C 1.53000 * 109.47378 * 239.99506 * 2 1 3 5 5 N 1.46909 * 109.47130 * 119.99967 * 2 1 3 6 6 C 1.46899 * 110.99720 * 59.99797 * 5 2 1 7 7 C 1.53002 * 109.47065 * 180.02562 * 6 5 2 8 8 H 1.08998 * 109.49615 * 54.93184 * 7 6 5 9 9 C 1.53039 * 109.49832 * 175.00062 * 7 6 5 10 10 C 1.53040 * 109.52506 * 181.35246 * 9 7 6 11 11 C 1.53186 * 109.31541 * 298.61451 * 10 9 7 12 12 N 1.46925 * 108.76646 * 54.65399 * 11 10 9 13 13 C 1.36938 * 120.63150 * 126.40670 * 12 11 10 14 14 H 1.07996 * 120.00218 * 331.83240 * 13 12 11 15 15 C 1.38814 * 119.99984 * 151.82799 * 13 12 11 16 16 N 1.31613 * 120.00261 * 343.07216 * 15 13 12 17 17 Si 1.86804 * 119.99792 * 163.06949 * 15 13 12 18 18 H 1.48494 * 109.47217 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46899 * 120.00296 * 17 15 13 20 20 H 1.48502 * 109.46993 * 240.00075 * 17 15 13 21 21 C 1.46934 * 118.73747 * 306.38569 * 12 11 10 22 22 H 1.08999 * 109.47525 * 300.00598 * 1 2 3 23 23 H 1.09008 * 109.47209 * 59.99639 * 1 2 3 24 24 H 1.08998 * 109.47470 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47470 * 179.97438 * 3 2 1 26 26 H 1.09006 * 109.47147 * 299.99606 * 3 2 1 27 27 H 1.08998 * 109.47492 * 59.99664 * 3 2 1 28 28 H 1.08998 * 109.47268 * 300.00672 * 4 2 1 29 29 H 1.09010 * 109.46757 * 60.00146 * 4 2 1 30 30 H 1.08997 * 109.47854 * 180.02562 * 4 2 1 31 31 H 1.00893 * 110.99819 * 296.04568 * 5 2 1 32 32 H 1.08998 * 109.47114 * 60.00214 * 6 5 2 33 33 H 1.09002 * 109.47240 * 300.00097 * 6 5 2 34 34 H 1.08994 * 109.45664 * 301.36692 * 9 7 6 35 35 H 1.08996 * 109.46235 * 61.34072 * 9 7 6 36 36 H 1.08997 * 109.49641 * 58.57717 * 10 9 7 37 37 H 1.08997 * 109.49829 * 178.67291 * 10 9 7 38 38 H 1.09002 * 109.59672 * 294.86971 * 11 10 9 39 39 H 1.08998 * 109.70903 * 174.50260 * 11 10 9 40 40 H 0.97004 * 120.00436 * 179.97438 * 16 15 13 41 41 H 1.08999 * 109.58710 * 293.81870 * 21 12 11 42 42 H 1.09005 * 109.70034 * 173.46270 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0196 -0.6925 1.1995 6 6 1.5485 -2.0835 1.2334 7 6 2.0770 -2.7704 2.4943 8 1 1.7888 -2.1916 3.3718 9 6 1.4865 -4.1787 2.5946 10 6 1.9882 -4.8539 3.8730 11 6 3.5145 -4.9728 3.8178 12 7 4.0839 -3.6401 3.5762 13 6 5.0437 -3.1300 4.4091 14 1 5.0784 -3.4359 5.4442 15 6 5.9720 -2.2196 3.9230 16 7 6.1536 -2.0941 2.6255 17 14 6.9636 -1.1725 5.1104 18 1 6.5747 -1.5026 6.5049 19 1 8.4109 -1.4469 4.9224 20 1 6.6939 0.2640 4.8476 21 6 3.6044 -2.8653 2.4235 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8901 27 1 1.6767 1.9563 0.8899 28 1 1.6766 -1.7490 -1.2492 29 1 1.6766 -0.2075 -2.1392 30 1 3.1299 -0.7218 -1.2490 31 1 1.7502 -0.1990 2.0372 32 1 1.9120 -2.6118 0.3520 33 1 0.4586 -2.0979 1.2420 34 1 0.3987 -4.1152 2.6203 35 1 1.7957 -4.7646 1.7291 36 1 1.7008 -4.2553 4.7374 37 1 1.5488 -5.8479 3.9560 38 1 3.7998 -5.6443 3.0080 39 1 3.8873 -5.3631 4.7647 40 1 6.8020 -1.4577 2.2857 41 1 3.8970 -3.3650 1.5000 42 1 4.0343 -1.8640 2.4492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082646055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:58 Heat of formation + Delta-G solvation = -15.139208 kcal Electronic energy + Delta-G solvation = -18567.383263 eV Core-core repulsion = 15967.338614 eV Total energy + Delta-G solvation = -2600.044649 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.89198 -38.54047 -35.19569 -33.74323 -31.80503 -30.47211 -28.34647 -28.13585 -27.15270 -25.62370 -23.73305 -22.11757 -20.66767 -19.96073 -18.61184 -17.01202 -16.41383 -16.06477 -15.70988 -15.64635 -15.16622 -14.94244 -14.45942 -14.30115 -14.04996 -13.91991 -13.49854 -12.98670 -12.88987 -12.87056 -12.75607 -12.63600 -12.47141 -12.34072 -12.14830 -11.93908 -11.89956 -11.68063 -11.54075 -11.36844 -11.01922 -10.96177 -10.47429 -9.09097 -8.59650 -7.79383 -5.26171 1.46228 1.47801 1.58356 2.54270 3.27925 3.32923 3.75451 3.95359 4.05259 4.14138 4.23205 4.25727 4.36311 4.38905 4.58509 4.71764 4.72723 4.82344 4.82842 4.89300 4.93054 4.96152 5.01023 5.04459 5.06486 5.10951 5.16374 5.23151 5.31371 5.40033 5.45862 5.47905 5.52679 5.64753 5.78555 6.01154 6.36718 6.47876 6.62517 7.22350 7.95447 8.46736 9.24799 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018904 B = 0.008401 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.804169 B = 3331.951113 C = 4420.057174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.100 3.900 3 C -0.134 4.134 4 C -0.136 4.136 5 N -0.692 5.692 6 C 0.081 3.919 7 C -0.101 4.101 8 H 0.050 0.950 9 C -0.099 4.099 10 C -0.122 4.122 11 C 0.136 3.864 12 N -0.615 5.615 13 C -0.267 4.267 14 H 0.061 0.939 15 C -0.047 4.047 16 N -0.925 5.925 17 Si 0.963 3.037 18 H -0.268 1.268 19 H -0.293 1.293 20 H -0.290 1.290 21 C 0.202 3.798 22 H 0.055 0.945 23 H 0.072 0.928 24 H 0.055 0.945 25 H 0.042 0.958 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.039 0.961 31 H 0.337 0.663 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.007 0.993 39 H 0.048 0.952 40 H 0.247 0.753 41 H -0.024 1.024 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.619 2.701 -4.908 14.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.009 3.991 3 C -0.192 4.192 4 C -0.193 4.193 5 N -0.323 5.323 6 C -0.049 4.049 7 C -0.121 4.121 8 H 0.069 0.931 9 C -0.137 4.137 10 C -0.161 4.161 11 C 0.010 3.990 12 N -0.339 5.339 13 C -0.397 4.397 14 H 0.079 0.921 15 C -0.243 4.243 16 N -0.571 5.571 17 Si 0.791 3.209 18 H -0.192 1.192 19 H -0.220 1.220 20 H -0.217 1.217 21 C 0.077 3.923 22 H 0.074 0.926 23 H 0.091 0.909 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.155 0.845 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.025 0.975 39 H 0.067 0.933 40 H 0.056 0.944 41 H -0.006 1.006 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.884 2.624 -5.259 14.161 hybrid contribution 0.239 0.556 0.689 0.917 sum -12.645 3.180 -4.570 13.817 Atomic orbital electron populations 1.22456 0.95812 1.02064 1.02683 1.21033 0.93044 0.94318 0.90660 1.21783 1.00811 0.94305 1.02273 1.21849 1.00639 1.00122 0.96727 1.60530 1.64354 1.02658 1.04747 1.21851 0.96671 0.88964 0.97380 1.21669 0.97392 0.96142 0.96900 0.93150 1.21392 0.99775 0.95016 0.97562 1.21869 0.95780 1.00642 0.97801 1.21092 0.93499 0.86643 0.97754 1.44449 1.43927 1.14283 1.31217 1.19481 1.06274 1.22692 0.91245 0.92117 1.25762 0.98439 1.03093 0.96992 1.70212 1.36680 1.37552 1.12626 0.85279 0.77885 0.78563 0.79132 1.19240 1.21967 1.21666 1.20421 0.89907 0.96034 0.85937 0.92592 0.90855 0.92571 0.93863 0.90472 0.92599 0.93021 0.90598 0.94166 0.84478 0.92205 0.93714 0.90592 0.93025 0.92896 0.90019 0.97462 0.93314 0.94360 1.00567 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.50 8.23 71.98 0.59 -2.91 16 2 C 0.10 2.58 0.97 3.52 0.00 2.58 16 3 C -0.13 -3.23 8.73 71.98 0.63 -2.60 16 4 C -0.14 -3.54 8.24 71.98 0.59 -2.95 16 5 N -0.69 -22.44 5.66 -470.18 -2.66 -25.10 16 6 C 0.08 2.58 4.29 86.30 0.37 2.95 16 7 C -0.10 -3.83 2.48 -10.72 -0.03 -3.86 16 8 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 9 C -0.10 -3.24 5.17 30.62 0.16 -3.08 16 10 C -0.12 -4.17 6.08 30.67 0.19 -3.98 16 11 C 0.14 5.95 6.52 86.36 0.56 6.51 16 12 N -0.62 -32.63 2.99 -699.08 -2.09 -34.72 16 13 C -0.27 -15.40 9.58 84.03 0.81 -14.59 16 14 H 0.06 3.44 7.88 -2.91 -0.02 3.42 16 15 C -0.05 -2.73 4.92 84.86 0.42 -2.31 16 16 N -0.93 -57.04 11.19 21.65 0.24 -56.79 16 17 Si 0.96 46.65 29.59 68.60 2.03 48.68 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 20 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 21 C 0.20 10.21 4.41 86.36 0.38 10.59 16 22 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 24 H 0.06 1.16 6.41 -2.39 -0.02 1.15 16 25 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 26 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.05 1.35 6.40 -2.39 -0.02 1.34 16 29 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.34 10.71 8.72 -89.70 -0.78 9.93 16 32 H 0.06 2.03 6.30 -2.39 -0.02 2.02 16 33 H 0.04 1.21 6.30 -2.39 -0.02 1.20 16 34 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 40 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 41 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 42 H 0.06 3.70 5.85 -2.38 -0.01 3.69 16 Total: -1.00 -65.73 318.46 2.37 -63.36 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.18 Total: 18.23 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: 4.67 Total: -13.65 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -4.51 Total: -116.61 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -65.73 2.37 -63.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082646055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.221 kcal (2) G-P(sol) polarization free energy of solvation -65.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds