Wall clock time and date at job start Mon Mar 30 2020 04:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47179 * 2 1 4 4 C 1.53002 * 109.47159 * 119.99754 * 2 1 3 5 5 N 1.46905 * 109.47050 * 239.99887 * 2 1 3 6 6 C 1.46892 * 110.99918 * 60.00140 * 5 2 1 7 7 C 1.52996 * 109.47375 * 175.97473 * 6 5 2 8 8 H 1.09007 * 109.58247 * 304.57873 * 7 6 5 9 9 C 1.53192 * 109.58666 * 65.00199 * 7 6 5 10 10 C 1.53037 * 109.31460 * 174.42636 * 9 7 6 11 11 C 1.53042 * 109.53723 * 298.63546 * 10 9 7 12 12 C 1.53193 * 109.31336 * 61.36605 * 11 10 9 13 13 N 1.46921 * 109.59208 * 184.29175 * 7 6 5 14 14 C 1.36939 * 120.62823 * 6.58527 * 13 7 6 15 15 H 1.07996 * 119.99869 * 327.62393 * 14 13 7 16 16 C 1.38817 * 120.00053 * 147.62518 * 14 13 7 17 17 N 1.31616 * 119.99939 * 349.07744 * 16 14 13 18 18 Si 1.86801 * 119.99908 * 169.06921 * 16 14 13 19 19 H 1.48500 * 109.46905 * 60.00224 * 18 16 14 20 20 H 1.48499 * 109.47049 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47204 * 300.00382 * 18 16 14 22 22 H 1.08999 * 109.47288 * 59.99971 * 1 2 3 23 23 H 1.09000 * 109.46967 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47016 * 299.99999 * 1 2 3 25 25 H 1.08998 * 109.47146 * 60.00080 * 3 2 1 26 26 H 1.08997 * 109.47268 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47034 * 300.00184 * 3 2 1 28 28 H 1.09000 * 109.46749 * 59.99801 * 4 2 1 29 29 H 1.08997 * 109.47215 * 180.02562 * 4 2 1 30 30 H 1.08998 * 109.47358 * 300.00038 * 4 2 1 31 31 H 1.00898 * 110.99510 * 183.95343 * 5 2 1 32 32 H 1.09011 * 109.47301 * 295.97234 * 6 5 2 33 33 H 1.09005 * 109.47742 * 55.97015 * 6 5 2 34 34 H 1.09001 * 109.49659 * 294.37761 * 9 7 6 35 35 H 1.08995 * 109.50127 * 54.47390 * 9 7 6 36 36 H 1.08996 * 109.46427 * 178.61473 * 10 9 7 37 37 H 1.08999 * 109.45963 * 58.65360 * 10 9 7 38 38 H 1.08997 * 109.49876 * 301.41404 * 11 10 9 39 39 H 1.09005 * 109.52082 * 181.32995 * 11 10 9 40 40 H 1.08994 * 109.58657 * 185.57769 * 12 11 10 41 41 H 1.08996 * 109.70403 * 65.21996 * 12 11 10 42 42 H 0.97000 * 119.99750 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 2.0197 -0.6925 -1.1995 6 6 1.5487 -0.0264 -2.4210 7 6 2.1587 -0.7137 -3.6443 8 1 3.2449 -0.7235 -3.5541 9 6 1.6355 -2.1503 -3.7403 10 6 2.1381 -2.7864 -5.0384 11 6 1.6039 -1.9967 -6.2356 12 6 2.1268 -0.5584 -6.1679 13 7 1.7720 0.0127 -4.8614 14 6 1.0934 1.1993 -4.7798 15 1 0.4007 1.3706 -3.9691 16 6 1.2958 2.1821 -5.7391 17 7 2.2863 2.0688 -6.5984 18 14 0.1624 3.6652 -5.8104 19 1 0.2293 4.4016 -4.5226 20 1 0.5879 4.5606 -6.9160 21 1 -1.2314 3.2120 -6.0496 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 -1.7488 1.2493 29 1 3.1300 -0.7208 1.2495 30 1 1.6767 -0.2074 2.1393 31 1 3.0262 -0.7626 -1.1909 32 1 0.4617 -0.0895 -2.4733 33 1 1.8515 1.0206 -2.4039 34 1 1.9971 -2.7269 -2.8889 35 1 0.5455 -2.1416 -3.7378 36 1 1.7875 -3.8167 -5.0974 37 1 3.2279 -2.7725 -5.0513 38 1 0.5143 -1.9893 -6.2095 39 1 1.9426 -2.4638 -7.1604 40 1 1.6711 0.0338 -6.9614 41 1 3.2103 -0.5553 -6.2858 42 1 2.4279 2.7557 -7.2685 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082646401.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:38 Heat of formation + Delta-G solvation = 3.198804 kcal Electronic energy + Delta-G solvation = -18717.347675 eV Core-core repulsion = 16118.098222 eV Total energy + Delta-G solvation = -2599.249453 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.48341 -37.02972 -32.99161 -32.43072 -30.00254 -28.98152 -27.29500 -27.06653 -25.22154 -24.14612 -21.90099 -20.35206 -19.12118 -18.75236 -16.48036 -15.51407 -14.80474 -14.55113 -14.23238 -13.92111 -13.68362 -13.41175 -13.04757 -12.83156 -12.38752 -12.34438 -12.12909 -11.89008 -11.63863 -11.51825 -11.05542 -11.01671 -10.83571 -10.73362 -10.60577 -10.44253 -10.36929 -10.12998 -9.90979 -9.84027 -9.29836 -9.18852 -8.43140 -7.86517 -6.51350 -5.73636 -3.21391 3.38031 3.43982 3.44684 4.42779 4.57570 5.04353 5.14720 5.37178 5.40648 5.59374 5.70505 5.71942 5.78687 5.85324 5.87368 5.92032 5.99333 6.02508 6.10135 6.15780 6.20970 6.25148 6.39533 6.47866 6.48868 6.57563 6.60859 6.78480 6.85131 6.90034 6.97547 7.04360 7.23334 7.49041 7.57355 7.75671 7.82315 7.88021 8.53733 9.27649 9.90769 10.50209 11.34080 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018252 B = 0.009187 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.748306 B = 3047.128444 C = 4212.410802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.105 3.895 3 C -0.183 4.183 4 C -0.135 4.135 5 N -0.679 5.679 6 C 0.064 3.936 7 C 0.178 3.822 8 H 0.019 0.981 9 C -0.117 4.117 10 C -0.111 4.111 11 C -0.143 4.143 12 C 0.175 3.825 13 N -0.588 5.588 14 C -0.249 4.249 15 H 0.063 0.937 16 C 0.005 3.995 17 N -0.904 5.904 18 Si 0.899 3.101 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.284 1.284 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.333 0.667 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.040 0.960 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.043 0.957 40 H 0.083 0.917 41 H 0.015 0.985 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.687 -5.671 10.258 11.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.014 3.986 3 C -0.242 4.242 4 C -0.193 4.193 5 N -0.311 5.311 6 C -0.064 4.064 7 C 0.071 3.929 8 H 0.036 0.964 9 C -0.156 4.156 10 C -0.149 4.149 11 C -0.183 4.183 12 C 0.050 3.950 13 N -0.312 5.312 14 C -0.379 4.379 15 H 0.081 0.919 16 C -0.194 4.194 17 N -0.548 5.548 18 Si 0.729 3.271 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.210 1.210 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.151 0.849 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.101 0.899 41 H 0.033 0.967 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.153 -6.002 10.118 11.821 hybrid contribution 0.067 1.683 -0.197 1.696 sum -1.086 -4.319 9.920 10.874 Atomic orbital electron populations 1.21853 0.94210 1.02062 1.01442 1.20876 0.95432 0.91358 0.90927 1.22571 1.00992 0.98259 1.02392 1.21803 1.00592 1.00720 0.96199 1.60740 1.15602 1.53316 1.01396 1.22143 1.00182 0.96496 0.87585 1.20352 0.95022 0.90499 0.87002 0.96382 1.21889 1.00291 0.97513 0.95944 1.21427 0.99715 0.97437 0.96315 1.22195 1.00380 0.99618 0.96077 1.20727 0.96426 0.88922 0.88975 1.44001 1.65994 1.21988 0.99201 1.19049 1.16522 0.91144 1.11220 0.91896 1.25167 0.96937 0.97320 0.99965 1.69977 1.29454 1.34765 1.20599 0.86431 0.80638 0.82815 0.77225 1.20977 1.21640 1.21003 0.92184 0.92167 0.93048 0.92808 0.92971 0.91535 0.92051 0.93061 0.92740 0.84918 0.91065 0.93564 0.92522 0.92898 0.94126 0.93215 0.92986 0.93786 0.89852 0.96651 0.93667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.24 37.16 0.31 -1.55 16 2 C 0.11 1.43 0.97 -131.60 -0.13 1.30 16 3 C -0.18 -2.53 8.24 37.16 0.31 -2.23 16 4 C -0.14 -1.53 8.73 37.16 0.32 -1.20 16 5 N -0.68 -10.53 5.69 -99.96 -0.57 -11.09 16 6 C 0.06 1.22 3.07 -3.83 -0.01 1.21 16 7 C 0.18 3.76 3.07 -67.60 -0.21 3.55 16 8 H 0.02 0.41 8.13 -51.93 -0.42 -0.01 16 9 C -0.12 -2.19 5.19 -26.61 -0.14 -2.33 16 10 C -0.11 -2.03 5.88 -26.69 -0.16 -2.18 16 11 C -0.14 -2.90 6.08 -26.61 -0.16 -3.06 16 12 C 0.18 4.29 5.25 -3.71 -0.02 4.27 16 13 N -0.59 -14.71 2.98 -164.78 -0.49 -15.20 16 14 C -0.25 -6.72 8.44 -15.06 -0.13 -6.85 16 15 H 0.06 1.66 6.38 -52.49 -0.33 1.33 16 16 C 0.00 0.13 5.03 -17.43 -0.09 0.05 16 17 N -0.90 -26.28 11.15 55.49 0.62 -25.66 16 18 Si 0.90 21.74 29.57 -169.99 -5.03 16.71 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H 0.06 0.91 6.49 -51.93 -0.34 0.57 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 1.07 6.32 -51.93 -0.33 0.74 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.33 5.00 8.66 -39.29 -0.34 4.66 16 32 H 0.07 1.44 6.06 -51.92 -0.31 1.12 16 33 H 0.05 0.98 5.35 -51.93 -0.28 0.70 16 34 H 0.06 0.97 7.92 -51.93 -0.41 0.56 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 2.27 6.20 -51.93 -0.32 1.95 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 314.55 15.07 4.74 4.74 Total: -1.00 -28.08 314.55 -8.55 -36.62 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -7.72 Total: 2.91 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -0.10 Total: -9.03 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.44 Total: -51.96 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.08 -8.55 -36.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082646401.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.822 kcal (2) G-P(sol) polarization free energy of solvation -28.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds