Wall clock time and date at job start Mon Mar 30 2020 04:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47179 * 2 1 4 4 C 1.53002 * 109.47159 * 119.99754 * 2 1 3 5 5 N 1.46905 * 109.47050 * 239.99887 * 2 1 3 6 6 C 1.46892 * 110.99918 * 60.00140 * 5 2 1 7 7 C 1.52996 * 109.47375 * 175.97473 * 6 5 2 8 8 H 1.09007 * 109.58247 * 304.57873 * 7 6 5 9 9 C 1.53192 * 109.58666 * 65.00199 * 7 6 5 10 10 C 1.53037 * 109.31460 * 174.42636 * 9 7 6 11 11 C 1.53042 * 109.53723 * 298.63546 * 10 9 7 12 12 C 1.53193 * 109.31336 * 61.36605 * 11 10 9 13 13 N 1.46921 * 109.59208 * 184.29175 * 7 6 5 14 14 C 1.36939 * 120.62823 * 6.58527 * 13 7 6 15 15 H 1.07996 * 119.99869 * 327.62393 * 14 13 7 16 16 C 1.38817 * 120.00053 * 147.62518 * 14 13 7 17 17 N 1.31616 * 119.99939 * 349.07744 * 16 14 13 18 18 Si 1.86801 * 119.99908 * 169.06921 * 16 14 13 19 19 H 1.48500 * 109.46905 * 60.00224 * 18 16 14 20 20 H 1.48499 * 109.47049 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47204 * 300.00382 * 18 16 14 22 22 H 1.08999 * 109.47288 * 59.99971 * 1 2 3 23 23 H 1.09000 * 109.46967 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47016 * 299.99999 * 1 2 3 25 25 H 1.08998 * 109.47146 * 60.00080 * 3 2 1 26 26 H 1.08997 * 109.47268 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47034 * 300.00184 * 3 2 1 28 28 H 1.09000 * 109.46749 * 59.99801 * 4 2 1 29 29 H 1.08997 * 109.47215 * 180.02562 * 4 2 1 30 30 H 1.08998 * 109.47358 * 300.00038 * 4 2 1 31 31 H 1.00898 * 110.99510 * 183.95343 * 5 2 1 32 32 H 1.09011 * 109.47301 * 295.97234 * 6 5 2 33 33 H 1.09005 * 109.47742 * 55.97015 * 6 5 2 34 34 H 1.09001 * 109.49659 * 294.37761 * 9 7 6 35 35 H 1.08995 * 109.50127 * 54.47390 * 9 7 6 36 36 H 1.08996 * 109.46427 * 178.61473 * 10 9 7 37 37 H 1.08999 * 109.45963 * 58.65360 * 10 9 7 38 38 H 1.08997 * 109.49876 * 301.41404 * 11 10 9 39 39 H 1.09005 * 109.52082 * 181.32995 * 11 10 9 40 40 H 1.08994 * 109.58657 * 185.57769 * 12 11 10 41 41 H 1.08996 * 109.70403 * 65.21996 * 12 11 10 42 42 H 0.97000 * 119.99750 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 2.0197 -0.6925 -1.1995 6 6 1.5487 -0.0264 -2.4210 7 6 2.1587 -0.7137 -3.6443 8 1 3.2449 -0.7235 -3.5541 9 6 1.6355 -2.1503 -3.7403 10 6 2.1381 -2.7864 -5.0384 11 6 1.6039 -1.9967 -6.2356 12 6 2.1268 -0.5584 -6.1679 13 7 1.7720 0.0127 -4.8614 14 6 1.0934 1.1993 -4.7798 15 1 0.4007 1.3706 -3.9691 16 6 1.2958 2.1821 -5.7391 17 7 2.2863 2.0688 -6.5984 18 14 0.1624 3.6652 -5.8104 19 1 0.2293 4.4016 -4.5226 20 1 0.5879 4.5606 -6.9160 21 1 -1.2314 3.2120 -6.0496 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 -1.7488 1.2493 29 1 3.1300 -0.7208 1.2495 30 1 1.6767 -0.2074 2.1393 31 1 3.0262 -0.7626 -1.1909 32 1 0.4617 -0.0895 -2.4733 33 1 1.8515 1.0206 -2.4039 34 1 1.9971 -2.7269 -2.8889 35 1 0.5455 -2.1416 -3.7378 36 1 1.7875 -3.8167 -5.0974 37 1 3.2279 -2.7725 -5.0513 38 1 0.5143 -1.9893 -6.2095 39 1 1.9426 -2.4638 -7.1604 40 1 1.6711 0.0338 -6.9614 41 1 3.2103 -0.5553 -6.2858 42 1 2.4279 2.7557 -7.2685 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082646401.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:37 Heat of formation + Delta-G solvation = -13.561170 kcal Electronic energy + Delta-G solvation = -18718.074442 eV Core-core repulsion = 16118.098222 eV Total energy + Delta-G solvation = -2599.976220 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.95649 -38.51058 -34.92304 -33.92537 -31.90161 -30.50473 -28.31585 -28.17285 -27.16093 -25.70613 -23.73192 -21.99672 -20.76163 -20.03625 -18.38193 -17.18356 -16.32286 -16.05970 -15.69047 -15.62040 -15.07751 -14.93946 -14.53181 -14.41646 -14.06134 -13.90016 -13.54288 -13.07252 -12.88088 -12.80983 -12.66412 -12.56444 -12.44964 -12.29924 -12.24765 -12.02205 -11.87696 -11.66716 -11.50251 -11.47239 -11.06274 -10.87983 -10.52300 -9.22340 -8.55571 -7.83796 -5.34274 1.43206 1.45249 1.51526 2.49424 3.16412 3.30913 3.84270 3.99530 4.07461 4.11945 4.26155 4.29657 4.33201 4.44478 4.63827 4.70604 4.71712 4.76376 4.84680 4.93582 4.96660 4.97850 5.02384 5.05498 5.11896 5.18470 5.26972 5.34844 5.37638 5.42050 5.44453 5.51111 5.53344 5.61391 5.70627 5.83349 6.22133 6.44091 6.58923 7.18972 7.90489 8.44111 9.21722 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018252 B = 0.009187 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.748306 B = 3047.128444 C = 4212.410802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.101 3.899 3 C -0.179 4.179 4 C -0.128 4.128 5 N -0.671 5.671 6 C 0.086 3.914 7 C 0.172 3.828 8 H 0.007 0.993 9 C -0.105 4.105 10 C -0.107 4.107 11 C -0.133 4.133 12 C 0.179 3.821 13 N -0.605 5.605 14 C -0.249 4.249 15 H 0.065 0.935 16 C -0.050 4.050 17 N -0.937 5.937 18 Si 0.959 3.041 19 H -0.277 1.277 20 H -0.294 1.294 21 H -0.278 1.278 22 H 0.035 0.965 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.035 0.965 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.338 0.662 32 H 0.059 0.941 33 H 0.018 0.982 34 H 0.079 0.921 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.046 0.954 39 H 0.064 0.936 40 H 0.049 0.951 41 H -0.008 1.008 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.209 -6.990 12.180 14.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.010 3.990 3 C -0.238 4.238 4 C -0.185 4.185 5 N -0.302 5.302 6 C -0.044 4.044 7 C 0.066 3.934 8 H 0.025 0.975 9 C -0.144 4.144 10 C -0.145 4.145 11 C -0.172 4.172 12 C 0.053 3.947 13 N -0.329 5.329 14 C -0.380 4.380 15 H 0.082 0.918 16 C -0.245 4.245 17 N -0.583 5.583 18 Si 0.788 3.212 19 H -0.203 1.203 20 H -0.220 1.220 21 H -0.204 1.204 22 H 0.054 0.946 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.156 0.844 32 H 0.077 0.923 33 H 0.036 0.964 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.010 0.990 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.681 -7.344 12.071 14.229 hybrid contribution 0.258 2.074 -0.739 2.216 sum -1.423 -5.270 11.333 12.579 Atomic orbital electron populations 1.21843 0.94070 1.02135 1.01309 1.21054 0.95614 0.91329 0.91025 1.22527 1.01048 0.98419 1.01834 1.21740 1.00973 1.00642 0.95189 1.60729 1.15923 1.52809 1.00751 1.21756 0.99108 0.94925 0.88574 1.20548 0.94529 0.92027 0.86289 0.97512 1.21757 0.99606 0.95731 0.97329 1.21416 0.99793 0.98643 0.94632 1.22042 0.99899 0.96922 0.98382 1.20553 0.94791 0.91247 0.88071 1.44278 1.66004 1.21999 1.00649 1.19322 1.16192 0.91773 1.10713 0.91766 1.25878 0.98482 1.00035 1.00141 1.70142 1.31251 1.35503 1.21389 0.85464 0.78955 0.79721 0.77083 1.20276 1.22032 1.20403 0.94601 0.91945 0.90925 0.90821 0.92819 0.94559 0.91772 0.92457 0.90931 0.84406 0.92307 0.96424 0.90255 0.93709 0.90852 0.93029 0.93467 0.91702 0.93261 0.98964 0.94298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.24 71.98 0.59 -2.84 16 2 C 0.10 2.54 0.97 3.53 0.00 2.54 16 3 C -0.18 -4.76 8.24 71.98 0.59 -4.17 16 4 C -0.13 -2.47 8.73 71.98 0.63 -1.84 16 5 N -0.67 -19.92 5.69 -470.17 -2.67 -22.59 16 6 C 0.09 3.27 3.07 86.30 0.27 3.54 16 7 C 0.17 7.25 3.07 44.97 0.14 7.39 16 8 H 0.01 0.32 8.13 -2.38 -0.02 0.30 16 9 C -0.11 -3.75 5.19 30.67 0.16 -3.59 16 10 C -0.11 -3.64 5.88 30.62 0.18 -3.46 16 11 C -0.13 -5.25 6.08 30.67 0.19 -5.07 16 12 C 0.18 8.99 5.25 86.36 0.45 9.44 16 13 N -0.60 -30.92 2.98 -675.24 -2.01 -32.93 16 14 C -0.25 -13.78 8.44 84.03 0.71 -13.07 16 15 H 0.06 3.47 6.38 -2.91 -0.02 3.45 16 16 C -0.05 -2.85 5.03 84.86 0.43 -2.42 16 17 N -0.94 -56.44 11.15 21.65 0.24 -56.20 16 18 Si 0.96 45.67 29.57 68.60 2.03 47.70 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 22 H 0.03 1.06 6.49 -2.39 -0.02 1.05 16 23 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 24 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.04 1.17 6.32 -2.39 -0.02 1.16 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.34 9.64 8.66 -89.70 -0.78 8.87 16 32 H 0.06 2.40 6.06 -2.38 -0.01 2.38 16 33 H 0.02 0.77 5.35 -2.38 -0.01 0.76 16 34 H 0.08 2.48 7.92 -2.39 -0.02 2.46 16 35 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 40 H 0.05 2.78 6.20 -2.39 -0.01 2.77 16 41 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 42 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -61.76 314.55 2.11 -59.65 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.19 Total: 17.89 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: 4.34 Total: -13.53 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -4.44 Total: -111.72 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -61.76 2.11 -59.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082646401.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.089 kcal (2) G-P(sol) polarization free energy of solvation -61.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds