Wall clock time and date at job start Mon Mar 30 2020 04:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47203 * 2 1 4 4 C 1.53001 * 109.47192 * 120.00090 * 2 1 3 5 5 N 1.46896 * 109.47292 * 174.99926 * 4 2 1 6 6 C 1.46899 * 111.00068 * 180.02562 * 5 4 2 7 7 C 1.53010 * 109.47075 * 185.11458 * 6 5 4 8 8 H 1.09003 * 109.58062 * 305.21258 * 7 6 5 9 9 C 1.53187 * 109.58765 * 65.48992 * 7 6 5 10 10 C 1.53041 * 109.31260 * 174.42124 * 9 7 6 11 11 C 1.53034 * 109.53959 * 298.63653 * 10 9 7 12 12 C 1.53191 * 109.31328 * 61.36319 * 11 10 9 13 13 N 1.46925 * 108.77713 * 305.36606 * 12 11 10 14 14 C 1.36935 * 120.63159 * 233.62742 * 13 12 11 15 15 H 1.08002 * 120.00176 * 148.26883 * 14 13 12 16 16 C 1.38811 * 119.99921 * 328.26713 * 14 13 12 17 17 N 1.31618 * 119.99569 * 164.58495 * 16 14 13 18 18 Si 1.86799 * 120.00195 * 344.58239 * 16 14 13 19 19 H 1.48503 * 109.46876 * 90.61843 * 18 16 14 20 20 H 1.48497 * 109.47234 * 210.62186 * 18 16 14 21 21 H 1.48500 * 109.46992 * 330.62141 * 18 16 14 22 22 H 1.08997 * 109.46984 * 299.99731 * 1 2 3 23 23 H 1.09004 * 109.47169 * 59.99824 * 1 2 3 24 24 H 1.08998 * 109.47112 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46984 * 240.00269 * 2 1 3 26 26 H 1.08994 * 109.47194 * 300.00310 * 3 2 1 27 27 H 1.09001 * 109.46719 * 59.99810 * 3 2 1 28 28 H 1.08997 * 109.47144 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46883 * 54.99844 * 4 2 1 30 30 H 1.09007 * 109.47120 * 295.00138 * 4 2 1 31 31 H 1.00903 * 111.00219 * 303.95591 * 5 4 2 32 32 H 1.08991 * 109.47312 * 65.11576 * 6 5 4 33 33 H 1.09003 * 109.47233 * 305.11005 * 6 5 4 34 34 H 1.09005 * 109.49686 * 54.46940 * 9 7 6 35 35 H 1.08998 * 109.52624 * 294.39410 * 9 7 6 36 36 H 1.08998 * 109.45791 * 58.66375 * 10 9 7 37 37 H 1.09000 * 109.45464 * 178.61328 * 10 9 7 38 38 H 1.08997 * 109.49975 * 181.31218 * 11 10 9 39 39 H 1.08997 * 109.49827 * 301.41630 * 11 10 9 40 40 H 1.08993 * 109.58903 * 185.57514 * 12 11 10 41 41 H 1.09007 * 109.58511 * 65.15253 * 12 11 10 42 42 H 0.97006 * 119.99872 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5040 -0.8267 1.1904 6 6 4.0303 -1.5160 2.3761 7 6 5.5598 -1.4941 2.3418 8 1 5.9102 -1.9165 1.4000 9 6 6.0559 -0.0508 2.4734 10 6 7.5828 -0.0480 2.5784 11 6 8.0113 -0.8218 3.8272 12 6 7.5374 -2.2739 3.7110 13 7 6.0889 -2.2803 3.4647 14 6 5.2480 -3.0049 4.2666 15 1 4.2421 -2.6565 4.4486 16 6 5.6885 -4.1871 4.8454 17 7 5.0141 -4.7240 5.8401 18 14 7.2383 -5.0161 4.2128 19 1 8.4128 -4.5136 4.9701 20 1 7.1235 -6.4854 4.3950 21 1 7.4108 -4.7082 2.7704 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6054 -1.7198 1.2951 30 1 1.7517 -0.1583 2.1370 31 1 3.7996 -1.2884 0.3433 32 1 3.6817 -2.5486 2.3807 33 1 3.6798 -1.0101 3.2759 34 1 5.6288 0.4005 3.3690 35 1 5.7505 0.5207 1.5970 36 1 8.0084 -0.5216 1.6938 37 1 7.9400 0.9795 2.6474 38 1 9.0976 -0.7996 3.9140 39 1 7.5658 -0.3633 4.7100 40 1 7.7526 -2.8039 4.6388 41 1 8.0512 -2.7607 2.8820 42 1 5.3221 -5.5500 6.2449 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082646423.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:46 Heat of formation + Delta-G solvation = 0.294928 kcal Electronic energy + Delta-G solvation = -18264.165769 eV Core-core repulsion = 15664.790395 eV Total energy + Delta-G solvation = -2599.375375 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.26916 -36.87061 -33.82419 -33.02472 -30.81342 -30.27273 -27.07558 -26.17458 -24.82097 -23.38046 -22.26103 -20.59477 -19.99359 -19.13898 -16.49682 -15.59124 -15.34059 -14.91446 -14.68262 -13.97994 -13.70449 -13.57058 -13.39970 -13.13292 -12.81925 -12.44812 -12.23178 -12.17414 -11.86297 -11.49091 -11.46270 -11.22675 -10.90495 -10.73723 -10.63565 -10.51719 -10.42094 -10.17178 -10.03244 -9.74625 -9.44646 -9.32935 -8.56910 -7.95707 -6.82850 -5.91251 -3.31879 3.34216 3.49310 3.52823 4.38638 4.56227 4.90948 5.02115 5.11218 5.29743 5.39497 5.51727 5.58740 5.62442 5.65213 5.70431 5.74015 5.82834 5.91674 5.93758 6.01729 6.13403 6.15337 6.18546 6.28545 6.34315 6.39042 6.45382 6.48801 6.56718 6.63214 6.74872 6.81380 6.82014 6.89195 7.16417 7.44751 7.74670 8.05714 8.39485 8.98996 9.76301 10.17240 11.24647 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025114 B = 0.006740 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.629183 B = 4153.194713 C = 4964.512034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.137 4.137 4 C 0.065 3.935 5 N -0.689 5.689 6 C 0.069 3.931 7 C 0.184 3.816 8 H 0.025 0.975 9 C -0.118 4.118 10 C -0.112 4.112 11 C -0.135 4.135 12 C 0.127 3.873 13 N -0.605 5.605 14 C -0.258 4.258 15 H 0.087 0.913 16 C 0.024 3.976 17 N -0.914 5.914 18 Si 0.889 3.111 19 H -0.288 1.288 20 H -0.306 1.306 21 H -0.271 1.271 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.042 0.958 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.026 0.974 30 H 0.069 0.931 31 H 0.333 0.667 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.049 0.951 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.023 0.977 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.541 9.796 -10.755 14.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.194 4.194 4 C -0.065 4.065 5 N -0.320 5.320 6 C -0.060 4.060 7 C 0.077 3.923 8 H 0.043 0.957 9 C -0.157 4.157 10 C -0.150 4.150 11 C -0.175 4.175 12 C 0.001 3.999 13 N -0.330 5.330 14 C -0.386 4.386 15 H 0.104 0.896 16 C -0.175 4.175 17 N -0.557 5.557 18 Si 0.720 3.280 19 H -0.216 1.216 20 H -0.234 1.234 21 H -0.196 1.196 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.149 0.851 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.041 0.959 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.478 10.275 -10.360 14.801 hybrid contribution 0.656 -1.558 -0.330 1.722 sum -1.822 8.717 -10.690 13.914 Atomic orbital electron populations 1.21820 0.95497 1.01548 1.01599 1.21110 0.94982 0.97182 0.98016 1.21715 1.02285 0.94976 1.00440 1.21969 0.88265 0.98302 0.97942 1.60463 1.09108 1.57050 1.05347 1.22040 0.95043 0.96919 0.91970 1.20300 0.91579 0.90424 0.89950 0.95724 1.21884 0.94409 0.98188 1.01251 1.21433 0.97009 0.98677 0.97860 1.22005 0.98817 0.98393 0.98239 1.21344 0.85185 0.94316 0.99038 1.44355 1.01878 1.55226 1.31521 1.18889 0.97393 1.00563 1.21797 0.89592 1.25378 0.97748 0.96595 0.97783 1.69791 1.40848 1.21312 1.23777 0.86870 0.83494 0.77752 0.79885 1.21610 1.23411 1.19615 0.92669 0.92841 0.92896 0.91655 0.93904 0.93183 0.91366 0.95557 0.91240 0.85063 0.93751 0.90988 0.92509 0.91943 0.93059 0.93444 0.93276 0.91948 0.91222 0.95942 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.19 37.16 0.34 -1.08 16 2 C -0.09 -1.03 3.06 -90.62 -0.28 -1.31 16 3 C -0.14 -1.47 9.08 37.16 0.34 -1.13 16 4 C 0.06 0.87 5.07 -3.83 -0.02 0.85 16 5 N -0.69 -10.24 5.52 -113.77 -0.63 -10.86 16 6 C 0.07 1.29 3.85 -3.82 -0.01 1.28 16 7 C 0.18 3.66 3.15 -67.60 -0.21 3.45 16 8 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 9 C -0.12 -2.07 5.20 -26.61 -0.14 -2.20 16 10 C -0.11 -1.86 5.88 -26.69 -0.16 -2.02 16 11 C -0.14 -2.50 6.08 -26.61 -0.16 -2.67 16 12 C 0.13 2.83 4.17 -3.71 -0.02 2.81 16 13 N -0.60 -14.41 2.73 -164.77 -0.45 -14.86 16 14 C -0.26 -7.12 8.91 -15.06 -0.13 -7.25 16 15 H 0.09 2.51 6.56 -52.49 -0.34 2.17 16 16 C 0.02 0.69 5.30 -17.43 -0.09 0.59 16 17 N -0.91 -28.11 13.97 55.49 0.78 -27.33 16 18 Si 0.89 22.78 24.30 -169.99 -4.13 18.65 16 19 H -0.29 -7.16 6.61 56.52 0.37 -6.79 16 20 H -0.31 -7.98 7.11 56.52 0.40 -7.57 16 21 H -0.27 -6.84 6.52 56.52 0.37 -6.48 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.80 7.75 -51.93 -0.40 0.40 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.33 4.64 8.78 -39.29 -0.35 4.29 16 32 H 0.04 0.94 7.36 -51.93 -0.38 0.56 16 33 H 0.07 1.47 7.69 -51.93 -0.40 1.07 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.99 7.94 -51.93 -0.41 0.58 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.07 1.70 4.67 -51.93 -0.24 1.45 16 41 H 0.02 0.50 6.90 -51.92 -0.36 0.15 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 315.65 15.07 4.76 4.76 Total: -1.00 -29.26 315.65 -8.22 -37.49 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -8.00 Total: 0.83 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -0.54 Total: -8.67 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.30 Total: -53.05 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.13 Total: 18.65 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.26 -8.22 -37.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082646423.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.782 kcal (2) G-P(sol) polarization free energy of solvation -29.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds