Wall clock time and date at job start Mon Mar 30 2020 04:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47203 * 2 1 4 4 C 1.53001 * 109.47192 * 120.00090 * 2 1 3 5 5 N 1.46896 * 109.47292 * 174.99926 * 4 2 1 6 6 C 1.46899 * 111.00068 * 180.02562 * 5 4 2 7 7 C 1.53010 * 109.47075 * 185.11458 * 6 5 4 8 8 H 1.09003 * 109.58062 * 305.21258 * 7 6 5 9 9 C 1.53187 * 109.58765 * 65.48992 * 7 6 5 10 10 C 1.53041 * 109.31260 * 174.42124 * 9 7 6 11 11 C 1.53034 * 109.53959 * 298.63653 * 10 9 7 12 12 C 1.53191 * 109.31328 * 61.36319 * 11 10 9 13 13 N 1.46925 * 108.77713 * 305.36606 * 12 11 10 14 14 C 1.36935 * 120.63159 * 233.62742 * 13 12 11 15 15 H 1.08002 * 120.00176 * 148.26883 * 14 13 12 16 16 C 1.38811 * 119.99921 * 328.26713 * 14 13 12 17 17 N 1.31618 * 119.99569 * 164.58495 * 16 14 13 18 18 Si 1.86799 * 120.00195 * 344.58239 * 16 14 13 19 19 H 1.48503 * 109.46876 * 90.61843 * 18 16 14 20 20 H 1.48497 * 109.47234 * 210.62186 * 18 16 14 21 21 H 1.48500 * 109.46992 * 330.62141 * 18 16 14 22 22 H 1.08997 * 109.46984 * 299.99731 * 1 2 3 23 23 H 1.09004 * 109.47169 * 59.99824 * 1 2 3 24 24 H 1.08998 * 109.47112 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46984 * 240.00269 * 2 1 3 26 26 H 1.08994 * 109.47194 * 300.00310 * 3 2 1 27 27 H 1.09001 * 109.46719 * 59.99810 * 3 2 1 28 28 H 1.08997 * 109.47144 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46883 * 54.99844 * 4 2 1 30 30 H 1.09007 * 109.47120 * 295.00138 * 4 2 1 31 31 H 1.00903 * 111.00219 * 303.95591 * 5 4 2 32 32 H 1.08991 * 109.47312 * 65.11576 * 6 5 4 33 33 H 1.09003 * 109.47233 * 305.11005 * 6 5 4 34 34 H 1.09005 * 109.49686 * 54.46940 * 9 7 6 35 35 H 1.08998 * 109.52624 * 294.39410 * 9 7 6 36 36 H 1.08998 * 109.45791 * 58.66375 * 10 9 7 37 37 H 1.09000 * 109.45464 * 178.61328 * 10 9 7 38 38 H 1.08997 * 109.49975 * 181.31218 * 11 10 9 39 39 H 1.08997 * 109.49827 * 301.41630 * 11 10 9 40 40 H 1.08993 * 109.58903 * 185.57514 * 12 11 10 41 41 H 1.09007 * 109.58511 * 65.15253 * 12 11 10 42 42 H 0.97006 * 119.99872 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5040 -0.8267 1.1904 6 6 4.0303 -1.5160 2.3761 7 6 5.5598 -1.4941 2.3418 8 1 5.9102 -1.9165 1.4000 9 6 6.0559 -0.0508 2.4734 10 6 7.5828 -0.0480 2.5784 11 6 8.0113 -0.8218 3.8272 12 6 7.5374 -2.2739 3.7110 13 7 6.0889 -2.2803 3.4647 14 6 5.2480 -3.0049 4.2666 15 1 4.2421 -2.6565 4.4486 16 6 5.6885 -4.1871 4.8454 17 7 5.0141 -4.7240 5.8401 18 14 7.2383 -5.0161 4.2128 19 1 8.4128 -4.5136 4.9701 20 1 7.1235 -6.4854 4.3950 21 1 7.4108 -4.7082 2.7704 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6054 -1.7198 1.2951 30 1 1.7517 -0.1583 2.1370 31 1 3.7996 -1.2884 0.3433 32 1 3.6817 -2.5486 2.3807 33 1 3.6798 -1.0101 3.2759 34 1 5.6288 0.4005 3.3690 35 1 5.7505 0.5207 1.5970 36 1 8.0084 -0.5216 1.6938 37 1 7.9400 0.9795 2.6474 38 1 9.0976 -0.7996 3.9140 39 1 7.5658 -0.3633 4.7100 40 1 7.7526 -2.8039 4.6388 41 1 8.0512 -2.7607 2.8820 42 1 5.3221 -5.5500 6.2449 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082646423.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:45 Heat of formation + Delta-G solvation = -18.473524 kcal Electronic energy + Delta-G solvation = -18264.979631 eV Core-core repulsion = 15664.790395 eV Total energy + Delta-G solvation = -2600.189236 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.86841 -38.04398 -35.09042 -34.92808 -32.70354 -31.77684 -27.90527 -27.66126 -26.59660 -24.76652 -23.97189 -22.07709 -21.14068 -20.70641 -18.44452 -17.39627 -16.59297 -16.49300 -15.92757 -15.35756 -15.25914 -15.10156 -14.86082 -14.70441 -14.34498 -13.88603 -13.61872 -13.37979 -13.10307 -12.99830 -12.89159 -12.69403 -12.43902 -12.25666 -11.90454 -11.79271 -11.69044 -11.61467 -11.53693 -11.44539 -11.22251 -10.98307 -10.63496 -9.31464 -8.80788 -8.14194 -5.50679 1.29077 1.39112 1.48552 2.42241 2.94583 3.17484 3.62424 3.92019 4.05212 4.10605 4.12099 4.18523 4.29298 4.36336 4.51831 4.58630 4.66723 4.70260 4.77756 4.79180 4.88637 4.90124 4.94636 5.08258 5.08948 5.11785 5.17341 5.24116 5.29718 5.31369 5.38429 5.39091 5.49401 5.59433 5.67417 5.92774 6.02791 6.21407 6.52298 6.96119 7.65720 8.07954 9.05593 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025114 B = 0.006740 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.629183 B = 4153.194713 C = 4964.512034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 C -0.133 4.133 4 C 0.064 3.936 5 N -0.674 5.674 6 C 0.086 3.914 7 C 0.178 3.822 8 H 0.033 0.967 9 C -0.108 4.108 10 C -0.108 4.108 11 C -0.130 4.130 12 C 0.118 3.882 13 N -0.619 5.619 14 C -0.238 4.238 15 H 0.055 0.945 16 C -0.037 4.037 17 N -0.963 5.963 18 Si 0.950 3.050 19 H -0.275 1.275 20 H -0.314 1.314 21 H -0.262 1.262 22 H 0.053 0.947 23 H 0.069 0.931 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.044 0.956 28 H 0.058 0.942 29 H 0.016 0.984 30 H 0.059 0.941 31 H 0.343 0.657 32 H 0.010 0.990 33 H 0.048 0.952 34 H 0.040 0.960 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.049 0.951 40 H 0.045 0.955 41 H 0.031 0.969 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.200 11.542 -13.130 17.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 C -0.191 4.191 4 C -0.065 4.065 5 N -0.305 5.305 6 C -0.044 4.044 7 C 0.072 3.928 8 H 0.051 0.949 9 C -0.147 4.147 10 C -0.145 4.145 11 C -0.169 4.169 12 C -0.007 4.007 13 N -0.345 5.345 14 C -0.368 4.368 15 H 0.073 0.927 16 C -0.231 4.231 17 N -0.610 5.610 18 Si 0.780 3.220 19 H -0.202 1.202 20 H -0.243 1.243 21 H -0.187 1.187 22 H 0.072 0.928 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.035 0.965 30 H 0.077 0.923 31 H 0.160 0.840 32 H 0.028 0.972 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.049 0.951 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.117 12.064 -12.778 17.609 hybrid contribution 0.152 -2.019 0.384 2.061 sum -0.965 10.045 -12.394 15.983 Atomic orbital electron populations 1.21805 0.94348 1.01755 1.02363 1.21071 0.95883 0.97114 0.96547 1.21679 1.01618 0.94684 1.01085 1.22041 0.87188 0.98071 0.99235 1.60434 1.10095 1.55786 1.04178 1.21701 0.94894 0.94915 0.92870 1.20533 0.91837 0.91617 0.88764 0.94904 1.21770 0.95473 0.95954 1.01467 1.21436 0.95780 1.00212 0.97104 1.21934 1.00480 0.95546 0.98910 1.21434 0.84179 0.97003 0.98052 1.44537 1.02387 1.55212 1.32323 1.18813 0.96712 1.00382 1.20902 0.92703 1.25999 1.01218 0.97560 0.98324 1.69928 1.43295 1.22039 1.25726 0.85867 0.80497 0.75952 0.79697 1.20216 1.24345 1.18655 0.92829 0.91167 0.93024 0.90887 0.92169 0.93661 0.92294 0.96525 0.92264 0.83954 0.97191 0.93305 0.94147 0.89693 0.91844 0.90457 0.90384 0.93254 0.93630 0.95131 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.19 71.98 0.66 -1.88 16 2 C -0.09 -1.76 3.06 -10.79 -0.03 -1.79 16 3 C -0.13 -2.56 9.08 71.98 0.65 -1.91 16 4 C 0.06 1.70 5.07 86.30 0.44 2.13 16 5 N -0.67 -19.47 5.52 -513.87 -2.84 -22.31 16 6 C 0.09 3.28 3.85 86.31 0.33 3.61 16 7 C 0.18 6.90 3.15 44.98 0.14 7.04 16 8 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 9 C -0.11 -3.49 5.20 30.67 0.16 -3.33 16 10 C -0.11 -3.13 5.88 30.62 0.18 -2.95 16 11 C -0.13 -4.42 6.08 30.67 0.19 -4.24 16 12 C 0.12 5.08 4.17 86.36 0.36 5.44 16 13 N -0.62 -29.34 2.73 -675.22 -1.84 -31.18 16 14 C -0.24 -13.55 8.91 84.03 0.75 -12.80 16 15 H 0.06 3.41 6.56 -2.91 -0.02 3.39 16 16 C -0.04 -2.19 5.30 84.86 0.45 -1.74 16 17 N -0.96 -61.53 13.97 21.65 0.30 -61.23 16 18 Si 0.95 47.71 24.30 68.60 1.67 49.38 16 19 H -0.28 -13.11 6.61 99.48 0.66 -12.45 16 20 H -0.31 -16.08 7.11 99.48 0.71 -15.37 16 21 H -0.26 -12.59 6.52 99.48 0.65 -11.94 16 22 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 24 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 1.24 7.75 -2.39 -0.02 1.22 16 29 H 0.02 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.34 8.98 8.78 -89.69 -0.79 8.20 16 32 H 0.01 0.44 7.36 -2.39 -0.02 0.42 16 33 H 0.05 2.08 7.69 -2.39 -0.02 2.06 16 34 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.08 2.40 7.94 -2.39 -0.02 2.38 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.05 2.17 4.67 -2.39 -0.01 2.16 16 41 H 0.03 1.28 6.90 -2.38 -0.02 1.26 16 42 H 0.26 15.83 8.31 -92.70 -0.77 15.06 16 Total: -1.00 -64.66 315.65 1.63 -63.03 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.06 Total: 14.73 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 4.28 Total: -12.42 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -4.38 Total: -114.72 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 1.67 Total: 49.38 kcal Total: -64.66 1.63 -63.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082646423.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.552 kcal (2) G-P(sol) polarization free energy of solvation -64.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds