Wall clock time and date at job start Mon Mar 30 2020 05:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46675 * 2 1 4 4 H 1.08994 * 109.51310 * 304.94753 * 3 2 1 5 5 C 1.53046 * 109.48861 * 184.88660 * 3 2 1 6 6 N 1.46951 * 109.37018 * 181.63271 * 5 3 2 7 7 C 1.46898 * 111.00548 * 183.19067 * 6 5 3 8 8 C 1.52999 * 109.47227 * 293.35498 * 7 6 5 9 9 C 1.50693 * 109.47370 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99672 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00411 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00282 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 119.99708 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.46886 * 89.99978 * 13 11 9 15 15 H 1.48498 * 109.47198 * 209.99765 * 13 11 9 16 16 H 1.48500 * 109.47109 * 329.99851 * 13 11 9 17 17 C 1.46959 * 110.87719 * 59.32159 * 6 5 3 18 18 H 1.08998 * 109.48866 * 60.64993 * 17 6 5 19 19 C 1.52999 * 109.49218 * 180.71555 * 17 6 5 20 20 C 1.52996 * 109.47536 * 185.40198 * 19 17 6 21 21 C 1.53048 * 109.36603 * 300.68319 * 17 6 5 22 22 N 1.46955 * 109.36731 * 58.39822 * 21 17 6 23 23 H 1.09003 * 109.46945 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47668 * 299.99570 * 1 2 3 25 25 H 1.08998 * 109.47062 * 60.00212 * 1 2 3 26 26 H 1.08999 * 109.47007 * 240.00460 * 2 1 3 27 27 H 1.08998 * 109.47062 * 119.99788 * 2 1 3 28 28 H 1.09004 * 109.49306 * 301.60425 * 5 3 2 29 29 H 1.09005 * 109.48858 * 61.66706 * 5 3 2 30 30 H 1.08998 * 109.46640 * 53.35381 * 7 6 5 31 31 H 1.09005 * 109.47279 * 173.35331 * 7 6 5 32 32 H 1.09000 * 109.46917 * 299.99975 * 8 7 6 33 33 H 1.08996 * 109.46882 * 59.99744 * 8 7 6 34 34 H 0.97004 * 119.99859 * 180.02562 * 12 11 9 35 35 H 1.09004 * 109.46861 * 305.40707 * 19 17 6 36 36 H 1.09007 * 109.47239 * 65.39391 * 19 17 6 37 37 H 1.08998 * 109.47206 * 62.90014 * 20 19 17 38 38 H 1.09004 * 109.47294 * 182.89882 * 20 19 17 39 39 H 1.08998 * 109.46818 * 302.89822 * 20 19 17 40 40 H 1.09004 * 109.49119 * 298.43251 * 21 17 6 41 41 H 1.09005 * 109.49230 * 178.36857 * 21 17 6 42 42 H 1.00898 * 111.00493 * 176.80786 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6064 1.9819 -0.8421 5 6 3.5655 1.4449 -0.1229 6 7 4.0555 2.8297 -0.0833 7 6 5.5112 2.8789 -0.2746 8 6 6.2052 2.2265 0.9227 9 6 7.6985 2.2764 0.7263 10 1 8.1112 2.7285 -0.1635 11 6 8.5378 1.7457 1.6827 12 7 9.8410 1.7888 1.5110 13 14 7.8239 0.9643 3.2220 14 1 7.5911 -0.4823 2.9803 15 1 8.7763 1.1309 4.3491 16 1 6.5367 1.6231 3.5601 17 6 3.6669 3.4871 1.1723 18 1 4.1004 2.9478 2.0145 19 6 4.1768 4.9296 1.1724 20 6 3.8905 5.5717 2.5313 21 6 2.1413 3.4848 1.2953 22 7 1.6513 2.0999 1.2556 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.9979 0.8823 0.7046 29 1 3.8549 0.9836 -1.0672 30 1 5.7762 2.3416 -1.1852 31 1 5.8317 3.9173 -0.3590 32 1 5.9401 2.7638 1.8333 33 1 5.8847 1.1882 1.0071 34 1 10.4314 1.4151 2.1838 35 1 5.2509 4.9353 0.9868 36 1 3.6700 5.4942 0.3897 37 1 4.4386 5.0383 3.3079 38 1 4.2071 6.6146 2.5144 39 1 2.8219 5.5197 2.7398 40 1 1.7089 4.0474 0.4678 41 1 1.8519 3.9461 2.2396 42 1 0.6515 2.0662 1.3871 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083117863.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:40 Heat of formation + Delta-G solvation = -11.811983 kcal Electronic energy + Delta-G solvation = -18540.568248 eV Core-core repulsion = 15940.667879 eV Total energy + Delta-G solvation = -2599.900370 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.49242 -35.98812 -34.03828 -32.57739 -32.04890 -29.84782 -28.40432 -26.07831 -24.40267 -23.39137 -22.00522 -21.13997 -20.15089 -18.49694 -16.89911 -16.27538 -15.60419 -15.03689 -14.53871 -14.22708 -13.88465 -13.76158 -13.56506 -13.04529 -12.85713 -12.71199 -12.53718 -12.33688 -11.99761 -11.54586 -11.42062 -11.18873 -10.99735 -10.84391 -10.79282 -10.71685 -10.35455 -10.22143 -10.15552 -9.72913 -9.59946 -9.18600 -8.52996 -8.35825 -7.60138 -6.04744 -4.02531 3.30290 3.37859 3.42880 4.24255 4.36939 4.45257 4.93696 4.99162 5.08508 5.21418 5.29085 5.31095 5.50065 5.52730 5.59955 5.63360 5.68772 5.74890 5.82513 5.89977 5.97542 6.05420 6.13144 6.16155 6.20776 6.26535 6.31412 6.40070 6.46912 6.54791 6.63474 6.79623 7.09398 7.23886 7.29833 7.42989 7.57708 7.69890 7.88413 8.53279 9.00200 9.58406 11.08577 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021113 B = 0.007577 C = 0.006532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.872453 B = 3694.736849 C = 4285.484880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.091 3.909 4 H 0.042 0.958 5 C 0.059 3.941 6 N -0.541 5.541 7 C 0.064 3.936 8 C -0.044 4.044 9 C -0.517 4.517 10 H 0.072 0.928 11 C 0.068 3.932 12 N -0.903 5.903 13 Si 0.877 3.123 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.266 1.266 17 C 0.084 3.916 18 H 0.056 0.944 19 C -0.120 4.120 20 C -0.150 4.150 21 C 0.066 3.934 22 N -0.687 5.687 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.019 0.981 33 H 0.010 0.990 34 H 0.263 0.737 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.033 0.967 41 H 0.075 0.925 42 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.443 1.468 -0.936 18.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.019 4.019 4 H 0.060 0.940 5 C -0.070 4.070 6 N -0.264 5.264 7 C -0.063 4.063 8 C -0.082 4.082 9 C -0.555 4.555 10 H 0.090 0.910 11 C -0.133 4.133 12 N -0.542 5.542 13 Si 0.705 3.295 14 H -0.204 1.204 15 H -0.214 1.214 16 H -0.191 1.191 17 C -0.025 4.025 18 H 0.074 0.926 19 C -0.158 4.158 20 C -0.208 4.208 21 C -0.063 4.063 22 N -0.320 5.320 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.037 0.963 33 H 0.028 0.972 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.051 0.949 41 H 0.093 0.907 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.961 1.431 -0.905 18.041 hybrid contribution -0.360 -0.535 0.919 1.122 sum -18.321 0.897 0.014 18.343 Atomic orbital electron populations 1.21769 0.96119 1.01571 1.01390 1.21564 0.95523 0.96038 1.02665 1.21569 0.95739 0.94178 0.90416 0.93996 1.22136 0.92974 0.90520 1.01339 1.62519 1.14718 1.15362 1.33830 1.22181 0.83642 1.01263 0.99229 1.20126 0.97265 0.95645 0.95183 1.21043 0.88884 1.38663 1.06921 0.90976 1.25008 0.94685 0.95526 0.98050 1.69916 1.02471 1.46403 1.35424 0.86813 0.79311 0.80075 0.83321 1.20381 1.21379 1.19092 1.21643 0.93565 0.95029 0.92288 0.92625 1.21604 1.02649 0.94452 0.97138 1.21786 1.00989 1.00328 0.97657 1.22070 0.95466 0.88564 1.00223 1.60533 1.18091 1.17138 1.36213 0.92725 0.92650 0.93107 0.91443 0.91049 0.93554 0.90796 0.91644 0.90968 0.96268 0.97171 0.92771 0.90298 0.91962 0.92652 0.92836 0.93083 0.94875 0.90721 0.84571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.68 37.16 0.36 -1.02 16 2 C -0.12 -1.36 5.61 -26.73 -0.15 -1.51 16 3 C 0.09 1.23 2.65 -67.65 -0.18 1.05 16 4 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 5 C 0.06 0.98 4.56 -3.77 -0.02 0.96 16 6 N -0.54 -9.58 4.73 -226.50 -1.07 -10.66 16 7 C 0.06 1.30 4.76 -3.83 -0.02 1.28 16 8 C -0.04 -1.06 3.32 -27.89 -0.09 -1.15 16 9 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 10 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 11 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 12 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 13 Si 0.88 22.34 27.47 -169.99 -4.67 17.67 16 14 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.27 -6.62 6.54 56.52 0.37 -6.25 16 17 C 0.08 1.39 1.46 -67.66 -0.10 1.29 16 18 H 0.06 1.10 6.44 -51.93 -0.33 0.76 16 19 C -0.12 -1.85 5.21 -26.73 -0.14 -1.99 16 20 C -0.15 -1.99 9.74 37.16 0.36 -1.63 16 21 C 0.07 0.91 5.73 -3.77 -0.02 0.89 16 22 N -0.69 -9.17 6.54 -106.59 -0.70 -9.87 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.49 6.70 -51.93 -0.35 0.14 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.05 0.88 6.65 -51.93 -0.35 0.53 16 29 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 30 H 0.07 1.35 8.09 -51.93 -0.42 0.93 16 31 H 0.07 1.48 6.30 -51.93 -0.33 1.15 16 32 H 0.02 0.48 5.47 -51.93 -0.28 0.19 16 33 H 0.01 0.25 6.07 -51.93 -0.32 -0.06 16 34 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 35 H 0.08 1.39 6.12 -51.93 -0.32 1.07 16 36 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.59 6.49 -51.93 -0.34 0.25 16 40 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.93 6.60 -51.93 -0.34 0.59 16 42 H 0.34 3.70 7.10 -39.29 -0.28 3.42 16 LS Contribution 311.01 15.07 4.69 4.69 Total: -1.00 -30.45 311.01 -8.86 -39.31 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.46 Total: 1.25 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -0.43 Total: -15.05 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -1.00 Total: -47.87 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.67 Total: 17.67 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.45 -8.86 -39.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083117863.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.501 kcal (2) G-P(sol) polarization free energy of solvation -30.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds