Wall clock time and date at job start Mon Mar 30 2020 05:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46675 * 2 1 4 4 H 1.08994 * 109.51310 * 304.94753 * 3 2 1 5 5 C 1.53046 * 109.48861 * 184.88660 * 3 2 1 6 6 N 1.46951 * 109.37018 * 181.63271 * 5 3 2 7 7 C 1.46898 * 111.00548 * 183.19067 * 6 5 3 8 8 C 1.52999 * 109.47227 * 293.35498 * 7 6 5 9 9 C 1.50693 * 109.47370 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99672 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00411 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00282 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 119.99708 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.46886 * 89.99978 * 13 11 9 15 15 H 1.48498 * 109.47198 * 209.99765 * 13 11 9 16 16 H 1.48500 * 109.47109 * 329.99851 * 13 11 9 17 17 C 1.46959 * 110.87719 * 59.32159 * 6 5 3 18 18 H 1.08998 * 109.48866 * 60.64993 * 17 6 5 19 19 C 1.52999 * 109.49218 * 180.71555 * 17 6 5 20 20 C 1.52996 * 109.47536 * 185.40198 * 19 17 6 21 21 C 1.53048 * 109.36603 * 300.68319 * 17 6 5 22 22 N 1.46955 * 109.36731 * 58.39822 * 21 17 6 23 23 H 1.09003 * 109.46945 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47668 * 299.99570 * 1 2 3 25 25 H 1.08998 * 109.47062 * 60.00212 * 1 2 3 26 26 H 1.08999 * 109.47007 * 240.00460 * 2 1 3 27 27 H 1.08998 * 109.47062 * 119.99788 * 2 1 3 28 28 H 1.09004 * 109.49306 * 301.60425 * 5 3 2 29 29 H 1.09005 * 109.48858 * 61.66706 * 5 3 2 30 30 H 1.08998 * 109.46640 * 53.35381 * 7 6 5 31 31 H 1.09005 * 109.47279 * 173.35331 * 7 6 5 32 32 H 1.09000 * 109.46917 * 299.99975 * 8 7 6 33 33 H 1.08996 * 109.46882 * 59.99744 * 8 7 6 34 34 H 0.97004 * 119.99859 * 180.02562 * 12 11 9 35 35 H 1.09004 * 109.46861 * 305.40707 * 19 17 6 36 36 H 1.09007 * 109.47239 * 65.39391 * 19 17 6 37 37 H 1.08998 * 109.47206 * 62.90014 * 20 19 17 38 38 H 1.09004 * 109.47294 * 182.89882 * 20 19 17 39 39 H 1.08998 * 109.46818 * 302.89822 * 20 19 17 40 40 H 1.09004 * 109.49119 * 298.43251 * 21 17 6 41 41 H 1.09005 * 109.49230 * 178.36857 * 21 17 6 42 42 H 1.00898 * 111.00493 * 176.80786 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6064 1.9819 -0.8421 5 6 3.5655 1.4449 -0.1229 6 7 4.0555 2.8297 -0.0833 7 6 5.5112 2.8789 -0.2746 8 6 6.2052 2.2265 0.9227 9 6 7.6985 2.2764 0.7263 10 1 8.1112 2.7285 -0.1635 11 6 8.5378 1.7457 1.6827 12 7 9.8410 1.7888 1.5110 13 14 7.8239 0.9643 3.2220 14 1 7.5911 -0.4823 2.9803 15 1 8.7763 1.1309 4.3491 16 1 6.5367 1.6231 3.5601 17 6 3.6669 3.4871 1.1723 18 1 4.1004 2.9478 2.0145 19 6 4.1768 4.9296 1.1724 20 6 3.8905 5.5717 2.5313 21 6 2.1413 3.4848 1.2953 22 7 1.6513 2.0999 1.2556 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.9979 0.8823 0.7046 29 1 3.8549 0.9836 -1.0672 30 1 5.7762 2.3416 -1.1852 31 1 5.8317 3.9173 -0.3590 32 1 5.9401 2.7638 1.8333 33 1 5.8847 1.1882 1.0071 34 1 10.4314 1.4151 2.1838 35 1 5.2509 4.9353 0.9868 36 1 3.6700 5.4942 0.3897 37 1 4.4386 5.0383 3.3079 38 1 4.2071 6.6146 2.5144 39 1 2.8219 5.5197 2.7398 40 1 1.7089 4.0474 0.4678 41 1 1.8519 3.9461 2.2396 42 1 0.6515 2.0662 1.3871 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083117863.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:39 Heat of formation + Delta-G solvation = -33.495080 kcal Electronic energy + Delta-G solvation = -18541.508498 eV Core-core repulsion = 15940.667879 eV Total energy + Delta-G solvation = -2600.840619 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.79431 -37.23188 -35.53652 -34.55912 -33.03949 -31.69561 -29.53675 -27.65780 -25.57050 -24.94222 -23.30137 -22.68601 -21.27999 -19.95306 -19.05105 -17.47295 -16.79458 -16.47323 -16.32900 -15.72153 -15.19443 -15.01016 -14.79826 -14.66483 -14.25757 -14.04977 -13.92412 -13.54614 -13.29206 -13.11023 -12.85032 -12.52685 -12.44116 -12.16814 -12.03643 -11.93245 -11.85380 -11.73946 -11.60360 -11.41485 -11.35329 -11.00963 -10.79746 -9.43333 -9.12636 -8.35193 -6.38369 1.26701 1.28378 1.40343 2.28534 2.98126 2.99567 3.22261 3.83105 3.90224 4.04843 4.16014 4.24780 4.34459 4.39207 4.45204 4.51711 4.54368 4.61057 4.68805 4.69929 4.73894 4.83356 4.89529 4.96199 5.02730 5.08261 5.16096 5.17844 5.29260 5.31747 5.35554 5.40184 5.46174 5.47272 5.56362 6.01509 6.04073 6.26694 6.27954 6.56912 6.69900 7.26160 8.81345 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021113 B = 0.007577 C = 0.006532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.872453 B = 3694.736849 C = 4285.484880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C 0.099 3.901 4 H 0.048 0.952 5 C 0.054 3.946 6 N -0.533 5.533 7 C 0.075 3.925 8 C -0.029 4.029 9 C -0.527 4.527 10 H 0.037 0.963 11 C 0.012 3.988 12 N -0.946 5.946 13 Si 0.943 3.057 14 H -0.269 1.269 15 H -0.278 1.278 16 H -0.258 1.258 17 C 0.081 3.919 18 H 0.023 0.977 19 C -0.118 4.118 20 C -0.145 4.145 21 C 0.073 3.927 22 N -0.695 5.695 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.020 0.980 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.015 0.985 33 H 0.006 0.994 34 H 0.267 0.733 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.038 0.962 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.043 0.957 41 H 0.093 0.907 42 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.450 1.451 -0.175 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.011 4.011 4 H 0.066 0.934 5 C -0.074 4.074 6 N -0.256 5.256 7 C -0.053 4.053 8 C -0.068 4.068 9 C -0.565 4.565 10 H 0.056 0.944 11 C -0.185 4.185 12 N -0.587 5.587 13 Si 0.767 3.233 14 H -0.194 1.194 15 H -0.204 1.204 16 H -0.182 1.182 17 C -0.028 4.028 18 H 0.041 0.959 19 C -0.156 4.156 20 C -0.203 4.203 21 C -0.056 4.056 22 N -0.330 5.330 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.038 0.962 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.033 0.967 33 H 0.024 0.976 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.112 0.888 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -21.000 1.416 -0.148 21.048 hybrid contribution 0.624 -0.503 0.610 1.007 sum -20.376 0.913 0.462 20.402 Atomic orbital electron populations 1.21724 0.94004 1.02499 1.02028 1.21538 0.97290 0.94358 1.02284 1.21481 0.93100 0.95712 0.90780 0.93433 1.22256 0.95461 0.89336 1.00370 1.62577 1.12190 1.16247 1.34617 1.21945 0.85563 1.00519 0.97292 1.19960 0.94556 0.95582 0.96678 1.21352 0.91410 1.38007 1.05738 0.94438 1.25880 0.94941 0.96156 1.01530 1.70047 1.03955 1.47740 1.36921 0.85761 0.78878 0.79374 0.79252 1.19398 1.20373 1.18223 1.21746 0.95873 0.95011 0.90186 0.95926 1.21571 1.00755 0.94209 0.99057 1.21755 1.02315 1.00601 0.95586 1.22002 0.92829 0.89153 1.01623 1.60475 1.19512 1.16882 1.36086 0.91730 0.92076 0.92354 0.91040 0.92319 0.96216 0.90583 0.92191 0.91247 0.96654 0.97615 0.92405 0.93369 0.90506 0.94294 0.91465 0.90744 0.93868 0.88843 0.82578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.68 71.98 0.70 -1.51 16 2 C -0.12 -2.40 5.61 30.60 0.17 -2.23 16 3 C 0.10 2.47 2.65 44.92 0.12 2.59 16 4 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 5 C 0.05 1.77 4.56 86.31 0.39 2.16 16 6 N -0.53 -18.64 4.73 -870.50 -4.12 -22.76 16 7 C 0.07 3.12 4.76 86.30 0.41 3.53 16 8 C -0.03 -1.43 3.32 29.85 0.10 -1.33 16 9 C -0.53 -31.24 9.66 25.60 0.25 -30.99 16 10 H 0.04 2.42 7.99 -2.91 -0.02 2.39 16 11 C 0.01 0.74 5.47 84.65 0.46 1.21 16 12 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 13 Si 0.94 46.50 27.47 68.60 1.88 48.38 16 14 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 15 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 16 H -0.26 -12.28 6.54 99.48 0.65 -11.63 16 17 C 0.08 2.60 1.46 44.92 0.07 2.67 16 18 H 0.02 0.89 6.44 -2.39 -0.02 0.87 16 19 C -0.12 -3.50 5.21 30.59 0.16 -3.34 16 20 C -0.14 -3.57 9.74 71.98 0.70 -2.87 16 21 C 0.07 1.81 5.73 86.31 0.49 2.31 16 22 N -0.70 -16.67 6.54 -491.13 -3.21 -19.88 16 23 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.06 0.86 6.70 -2.39 -0.02 0.84 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.02 0.74 6.65 -2.38 -0.02 0.73 16 29 H 0.08 2.39 8.10 -2.38 -0.02 2.38 16 30 H 0.06 2.54 8.09 -2.39 -0.02 2.52 16 31 H 0.07 2.93 6.30 -2.38 -0.02 2.91 16 32 H 0.02 0.77 5.47 -2.39 -0.01 0.76 16 33 H 0.01 0.28 6.07 -2.39 -0.01 0.27 16 34 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 35 H 0.05 1.72 6.12 -2.38 -0.01 1.70 16 36 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.07 1.48 6.49 -2.39 -0.02 1.46 16 40 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.09 1.98 6.60 -2.38 -0.02 1.96 16 42 H 0.35 6.52 7.10 -89.70 -0.64 5.89 16 Total: -1.00 -66.70 311.01 -0.84 -67.54 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.28 Total: 14.57 kcal Atomic # 6 Polarization: -31.84 SS G_CDS: 4.02 Total: -27.82 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -7.03 Total: -102.67 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.88 Total: 48.38 kcal Total: -66.70 -0.84 -67.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083117863.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.046 kcal (2) G-P(sol) polarization free energy of solvation -66.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds