Wall clock time and date at job start Mon Mar 30 2020 04:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46892 * 111.00140 * 2 1 4 4 C 1.46902 * 110.99671 * 123.95863 * 2 1 3 5 5 C 1.52996 * 109.46880 * 296.04042 * 4 2 1 6 6 C 1.52997 * 109.46914 * 176.04272 * 4 2 1 7 7 C 1.52992 * 109.47464 * 56.04061 * 4 2 1 8 8 N 1.46904 * 109.47213 * 60.45352 * 7 4 2 9 9 C 1.46900 * 110.99984 * 184.82760 * 8 7 4 10 10 C 1.53001 * 109.46656 * 185.30573 * 9 8 7 11 11 C 1.50699 * 115.55362 * 305.24037 * 10 9 8 12 12 H 1.07998 * 119.99991 * 275.58278 * 11 10 9 13 13 C 1.37877 * 119.99750 * 95.31450 * 11 10 9 14 14 N 1.31513 * 119.99921 * 175.62478 * 13 11 10 15 15 Si 1.86803 * 120.00005 * 355.61459 * 13 11 10 16 16 H 1.48494 * 109.46988 * 95.02136 * 15 13 11 17 17 H 1.48507 * 109.46998 * 215.01816 * 15 13 11 18 18 H 1.48491 * 109.47012 * 335.01764 * 15 13 11 19 19 C 1.53001 * 117.49787 * 90.91402 * 10 9 8 20 20 C 1.53010 * 117.49618 * 159.57158 * 10 9 8 21 21 H 1.09005 * 109.47263 * 296.04786 * 1 2 3 22 22 H 1.09001 * 109.47098 * 56.04416 * 1 2 3 23 23 H 1.09000 * 109.47976 * 176.04430 * 1 2 3 24 24 H 1.09005 * 109.46989 * 183.95823 * 3 2 1 25 25 H 1.09000 * 109.47579 * 303.95233 * 3 2 1 26 26 H 1.09000 * 109.47528 * 63.95619 * 3 2 1 27 27 H 1.09002 * 109.47523 * 180.02562 * 5 4 2 28 28 H 1.09001 * 109.47287 * 300.00306 * 5 4 2 29 29 H 1.08997 * 109.47543 * 60.00151 * 5 4 2 30 30 H 1.08998 * 109.47272 * 305.53962 * 6 4 2 31 31 H 1.09004 * 109.47428 * 65.53942 * 6 4 2 32 32 H 1.08998 * 109.47203 * 185.53987 * 6 4 2 33 33 H 1.09002 * 109.47309 * 300.45662 * 7 4 2 34 34 H 1.09002 * 109.47376 * 180.45338 * 7 4 2 35 35 H 1.00900 * 110.99942 * 308.78409 * 8 7 4 36 36 H 1.08994 * 109.47149 * 65.30845 * 9 8 7 37 37 H 1.08996 * 109.47447 * 305.30764 * 9 8 7 38 38 H 0.97001 * 120.00173 * 179.97438 * 14 13 11 39 39 H 1.09000 * 117.50048 * 214.99666 * 19 10 9 40 40 H 1.09000 * 117.50172 * 0.02562 * 19 10 9 41 41 H 1.09001 * 117.49599 * 359.97438 * 20 10 9 42 42 H 1.08994 * 117.49923 * 144.97200 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 1.5869 -0.0838 2.4446 6 6 3.5216 -0.8266 1.0491 7 6 1.4259 -2.1857 1.1037 8 7 1.8272 -2.8446 -0.1464 9 6 1.2040 -4.1694 -0.2668 10 6 1.7463 -4.8769 -1.5103 11 6 1.6093 -4.1151 -2.8033 12 1 0.6872 -4.1635 -3.3634 13 6 2.6592 -3.3519 -3.2683 14 7 2.5720 -2.7565 -4.4377 15 14 4.2053 -3.1633 -2.2371 16 1 5.2111 -4.1686 -2.6647 17 1 4.7603 -1.7983 -2.4221 18 1 3.8738 -3.3729 -0.8050 19 6 2.9846 -5.7588 -1.3378 20 6 1.6143 -6.4001 -1.5704 21 1 -0.3634 0.4513 0.9233 22 1 -0.3633 0.5740 -0.8524 23 1 -0.3635 -1.0252 -0.0709 24 1 3.0828 1.3431 -0.0709 25 1 1.5899 1.9163 -0.8524 26 1 1.7045 1.8723 0.9233 27 1 1.9778 -0.6519 3.2888 28 1 1.9926 0.9276 2.4688 29 1 0.4996 -0.0406 2.5076 30 1 3.8138 -1.2224 0.0765 31 1 3.9327 0.1754 1.1721 32 1 3.9057 -1.4759 1.8359 33 1 0.3381 -2.1423 1.1585 34 1 1.8102 -2.7517 1.9523 35 1 1.6086 -2.2683 -0.9453 36 1 0.1236 -4.0561 -0.3554 37 1 1.4358 -4.7618 0.6184 38 1 3.3104 -2.2193 -4.7647 39 1 3.7002 -5.7879 -2.1595 40 1 3.4128 -5.8353 -0.3383 41 1 1.1416 -6.8981 -0.7239 42 1 1.4280 -6.8511 -2.5451 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:11 Heat of formation + Delta-G solvation = 23.404777 kcal Electronic energy + Delta-G solvation = -19002.807364 eV Core-core repulsion = 16404.434108 eV Total energy + Delta-G solvation = -2598.373256 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.31277 -38.78330 -35.34432 -34.11020 -32.81182 -29.38235 -28.30630 -27.61371 -26.69678 -25.01689 -24.07571 -23.10347 -20.69503 -19.54793 -18.22243 -17.08037 -16.68674 -16.64891 -15.76723 -15.66271 -15.40379 -15.06596 -14.73431 -14.54505 -14.20168 -13.59419 -13.35831 -13.28482 -13.15858 -12.83255 -12.76426 -12.66082 -12.35292 -12.32216 -12.05180 -12.00083 -11.93586 -11.58163 -11.36644 -11.27670 -10.78929 -10.53383 -10.16594 -9.07835 -8.73485 -8.17848 -6.26371 1.49943 1.59648 1.95775 2.61980 3.03933 3.18729 3.26136 3.68371 3.94923 4.11219 4.24991 4.29651 4.32432 4.39566 4.47168 4.60936 4.64812 4.66201 4.71857 4.80745 4.82843 4.86069 4.93907 4.94650 4.95748 5.00653 5.06272 5.09868 5.14276 5.16662 5.27226 5.45336 5.55477 5.57317 5.85204 6.23381 6.27916 6.36888 6.56160 6.78175 6.85621 7.47665 8.95186 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023789 B = 0.009537 C = 0.008555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.716671 B = 2935.231740 C = 3271.976367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.559 5.559 3 C 0.025 3.975 4 C 0.106 3.894 5 C -0.169 4.169 6 C -0.131 4.131 7 C 0.069 3.931 8 N -0.679 5.679 9 C 0.110 3.890 10 C -0.014 4.014 11 C -0.489 4.489 12 H 0.023 0.977 13 C 0.035 3.965 14 N -0.953 5.953 15 Si 0.926 3.074 16 H -0.315 1.315 17 H -0.320 1.320 18 H -0.157 1.157 19 C -0.190 4.190 20 C -0.173 4.173 21 H 0.044 0.956 22 H 0.061 0.939 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.080 0.920 35 H 0.349 0.651 36 H 0.012 0.988 37 H 0.072 0.928 38 H 0.259 0.741 39 H 0.058 0.942 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.276 5.157 16.788 17.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.284 5.284 3 C -0.123 4.123 4 C 0.016 3.984 5 C -0.228 4.228 6 C -0.188 4.188 7 C -0.061 4.061 8 N -0.312 5.312 9 C -0.020 4.020 10 C -0.015 4.015 11 C -0.527 4.527 12 H 0.041 0.959 13 C -0.162 4.162 14 N -0.592 5.592 15 Si 0.755 3.245 16 H -0.244 1.244 17 H -0.249 1.249 18 H -0.077 1.077 19 C -0.227 4.227 20 C -0.210 4.210 21 H 0.062 0.938 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.099 0.901 35 H 0.169 0.831 36 H 0.030 0.970 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.485 4.793 16.518 17.206 hybrid contribution -0.508 0.852 -0.408 1.073 sum -0.993 5.645 16.110 17.099 Atomic orbital electron populations 1.22373 0.87483 1.01607 1.00776 1.62060 1.08129 1.14722 1.43478 1.22402 1.00722 0.88320 1.00853 1.21159 0.95601 0.92726 0.88888 1.22332 1.01712 1.01375 0.97379 1.21787 0.93709 1.01227 1.02108 1.22124 0.96918 0.93382 0.93671 1.60650 1.61225 1.04249 1.05039 1.21349 0.94303 0.90702 0.95626 1.19355 0.98654 0.89368 0.94149 1.20378 0.99437 1.28110 1.04748 0.95898 1.25727 1.01717 0.93852 0.94926 1.70076 1.33798 1.34534 1.20831 0.86332 0.77321 0.73732 0.87156 1.24394 1.24920 1.07728 1.22854 0.91299 1.07625 1.00914 1.22927 0.99815 0.96765 1.01539 0.93765 0.91975 0.92717 0.91721 0.91951 0.93721 0.90740 0.91583 0.92260 0.93890 0.92388 0.91305 0.95602 0.90150 0.83071 0.96951 0.90941 0.93245 0.92337 0.87935 0.87514 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 8.80 127.69 1.12 1.82 16 2 N -0.56 -16.77 4.03 -898.72 -3.62 -20.39 16 3 C 0.02 0.63 8.82 127.69 1.13 1.75 16 4 C 0.11 2.83 0.47 3.52 0.00 2.83 16 5 C -0.17 -3.36 7.78 71.98 0.56 -2.80 16 6 C -0.13 -3.70 7.82 71.98 0.56 -3.14 16 7 C 0.07 2.01 4.18 86.30 0.36 2.37 16 8 N -0.68 -25.73 2.87 -513.90 -1.48 -27.20 16 9 C 0.11 4.20 5.61 86.30 0.48 4.68 16 10 C -0.01 -0.64 1.37 -52.92 -0.07 -0.71 16 11 C -0.49 -28.14 8.70 25.60 0.22 -27.91 16 12 H 0.02 1.49 8.06 -2.91 -0.02 1.46 16 13 C 0.04 2.10 5.21 84.65 0.44 2.54 16 14 N -0.95 -61.63 13.96 21.45 0.30 -61.33 16 15 Si 0.93 46.80 22.01 68.60 1.51 48.31 16 16 H -0.31 -16.29 7.07 99.48 0.70 -15.59 16 17 H -0.32 -16.83 7.11 99.48 0.71 -16.13 16 18 H -0.16 -6.98 4.87 99.48 0.48 -6.49 16 19 C -0.19 -7.91 7.24 30.62 0.22 -7.69 16 20 C -0.17 -6.83 9.96 30.62 0.30 -6.53 16 21 H 0.04 0.99 6.40 -2.38 -0.02 0.97 16 22 H 0.06 1.70 8.12 -2.39 -0.02 1.68 16 23 H 0.05 1.65 6.23 -2.39 -0.01 1.63 16 24 H 0.06 1.67 6.43 -2.38 -0.02 1.66 16 25 H 0.06 1.57 8.12 -2.39 -0.02 1.55 16 26 H 0.04 0.92 6.30 -2.39 -0.02 0.91 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.07 1.22 6.40 -2.39 -0.02 1.20 16 29 H 0.06 1.14 6.49 -2.39 -0.02 1.12 16 30 H 0.04 1.53 6.40 -2.39 -0.02 1.52 16 31 H 0.06 1.43 6.71 -2.39 -0.02 1.42 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.03 0.74 6.31 -2.39 -0.02 0.73 16 34 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.35 15.61 6.38 -89.69 -0.57 15.04 16 36 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.07 2.37 8.08 -2.39 -0.02 2.36 16 38 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 39 H 0.06 2.72 6.53 -2.39 -0.02 2.70 16 40 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 41 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 42 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -67.13 306.13 2.23 -64.90 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 0.18 Total: 28.50 kcal Atomic # 6 Polarization: -38.12 SS G_CDS: 5.34 Total: -32.78 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -4.80 Total: -108.93 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.51 Total: 48.31 kcal Total: -67.13 2.23 -64.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.305 kcal (2) G-P(sol) polarization free energy of solvation -67.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds