Wall clock time and date at job start Mon Mar 30 2020 05:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47019 * 2 1 4 4 H 1.08994 * 109.50740 * 55.07772 * 3 2 1 5 5 C 1.53032 * 109.50094 * 294.99513 * 3 2 1 6 6 N 1.46850 * 109.52241 * 180.88168 * 5 3 2 7 7 C 1.46904 * 111.00104 * 185.84259 * 6 5 3 8 8 C 1.52994 * 109.47264 * 169.99998 * 7 6 5 9 9 C 1.53001 * 109.47367 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.46995 * 180.02562 * 9 8 7 11 11 H 1.07991 * 120.00449 * 359.72153 * 10 9 8 12 12 C 1.37885 * 119.99686 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99913 * 359.72095 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.72528 * 12 10 9 15 15 H 1.48490 * 109.47339 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47239 * 120.00108 * 14 12 10 17 17 H 1.48504 * 109.46636 * 239.99667 * 14 12 10 18 18 C 1.46846 * 111.19767 * 61.74709 * 6 5 3 19 19 C 1.53041 * 109.51828 * 298.25784 * 18 6 5 20 20 C 1.53113 * 109.27969 * 59.18226 * 19 18 6 21 21 H 1.09006 * 109.52253 * 182.44060 * 20 19 18 22 22 N 1.46902 * 109.57661 * 62.28066 * 20 19 18 23 23 H 1.08997 * 109.46821 * 60.00235 * 1 2 3 24 24 H 1.09001 * 109.47005 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47038 * 300.00004 * 1 2 3 26 26 H 1.09000 * 109.46877 * 239.99265 * 2 1 3 27 27 H 1.09007 * 109.46785 * 119.99869 * 2 1 3 28 28 H 1.09006 * 109.46052 * 60.86900 * 5 3 2 29 29 H 1.08999 * 109.46089 * 300.89504 * 5 3 2 30 30 H 1.08998 * 109.47046 * 49.99675 * 7 6 5 31 31 H 1.09001 * 109.47014 * 289.99875 * 7 6 5 32 32 H 1.08998 * 109.47353 * 59.99865 * 8 7 6 33 33 H 1.09006 * 109.47395 * 300.00120 * 8 7 6 34 34 H 1.08998 * 109.47065 * 59.99602 * 9 8 7 35 35 H 1.09001 * 109.46892 * 299.99866 * 9 8 7 36 36 H 0.97000 * 119.99651 * 180.02562 * 13 12 10 37 37 H 1.08996 * 109.46465 * 58.27194 * 18 6 5 38 38 H 1.08998 * 109.46421 * 178.24606 * 18 6 5 39 39 H 1.09004 * 109.50105 * 299.23441 * 19 18 6 40 40 H 1.09002 * 109.53251 * 179.14245 * 19 18 6 41 41 H 1.00898 * 111.00067 * 60.28223 * 22 20 19 42 42 H 1.00896 * 110.99816 * 184.23671 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9817 0.8424 5 6 1.6356 2.1273 -1.3074 6 7 2.1430 3.5053 -1.3170 7 6 1.6569 4.2372 -2.4943 8 6 1.9934 5.7223 -2.3465 9 6 1.4866 6.4847 -3.5724 10 6 1.8187 7.9474 -3.4269 11 1 2.3351 8.2990 -2.5460 12 6 1.4585 8.8378 -4.4162 13 7 0.8300 8.4096 -5.4892 14 14 1.8632 10.6521 -4.2324 15 1 2.5674 10.8741 -2.9441 16 1 2.7363 11.0806 -5.3545 17 1 0.6070 11.4439 -4.2524 18 6 3.6097 3.5316 -1.2496 19 6 4.0730 2.8886 0.0596 20 6 3.5665 1.4450 0.1208 21 1 3.8573 0.9969 1.0710 22 7 4.1478 0.6721 -0.9849 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5140 -0.8899 27 1 1.8934 -0.5139 0.8901 28 1 0.5488 2.1399 -1.3897 29 1 2.0573 1.5792 -2.1500 30 1 0.5769 4.1158 -2.5772 31 1 2.1366 3.8435 -3.3904 32 1 3.0735 5.8437 -2.2636 33 1 1.5138 6.1161 -1.4503 34 1 0.4066 6.3633 -3.6548 35 1 1.9659 6.0911 -4.4687 36 1 0.5769 9.0359 -6.1854 37 1 4.0220 2.9770 -2.0924 38 1 3.9567 4.5641 -1.2898 39 1 3.6724 3.4511 0.9030 40 1 5.1622 2.8943 0.1030 41 1 5.1550 0.6592 -0.9268 42 1 3.7749 -0.2652 -1.0062 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122798628.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:06 Heat of formation + Delta-G solvation = -47.078181 kcal Electronic energy + Delta-G solvation = -17803.245682 eV Core-core repulsion = 15201.816055 eV Total energy + Delta-G solvation = -2601.429627 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.56773 -37.21448 -35.39041 -34.53033 -33.16954 -30.94785 -29.69251 -28.02754 -25.30595 -25.14062 -23.22016 -22.30334 -21.14406 -19.84981 -18.48477 -17.09851 -16.83106 -16.45142 -16.30137 -16.09204 -15.40124 -14.95950 -14.66904 -14.49195 -14.24797 -13.84348 -13.67801 -13.52109 -13.13940 -12.93244 -12.78321 -12.55503 -12.44363 -12.22406 -12.16136 -11.94522 -11.60084 -11.50566 -11.38912 -11.29136 -10.97444 -10.88827 -10.54976 -9.58261 -9.04132 -8.19788 -6.30993 1.40012 1.40652 1.54465 2.41444 3.03288 3.13124 3.66857 3.78569 3.86349 4.05690 4.22234 4.23196 4.37111 4.40853 4.49877 4.56920 4.64667 4.73582 4.74232 4.80162 4.94189 4.95798 5.00342 5.05714 5.06616 5.12520 5.19230 5.20286 5.28952 5.34402 5.44796 5.51269 5.54151 5.74750 5.85854 6.18166 6.29319 6.33809 6.36230 6.69168 6.85715 7.38185 8.92578 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.040345 B = 0.004281 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.847746 B = 6538.708546 C = 6908.097277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.074 4.074 4 H 0.072 0.928 5 C 0.070 3.930 6 N -0.543 5.543 7 C 0.070 3.930 8 C -0.087 4.087 9 C 0.026 3.974 10 C -0.542 4.542 11 H 0.059 0.941 12 C -0.002 4.002 13 N -0.934 5.934 14 Si 0.967 3.033 15 H -0.262 1.262 16 H -0.277 1.277 17 H -0.277 1.277 18 C 0.061 3.939 19 C -0.105 4.105 20 C 0.099 3.901 21 H 0.049 0.951 22 N -0.852 5.852 23 H 0.046 0.954 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.033 0.967 30 H 0.063 0.937 31 H 0.017 0.983 32 H 0.048 0.952 33 H 0.051 0.949 34 H -0.009 1.009 35 H -0.012 1.012 36 H 0.264 0.736 37 H 0.033 0.967 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.346 0.654 42 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.982 -18.416 13.058 23.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.094 4.094 4 H 0.090 0.910 5 C -0.058 4.058 6 N -0.268 5.268 7 C -0.058 4.058 8 C -0.125 4.125 9 C -0.012 4.012 10 C -0.580 4.580 11 H 0.077 0.923 12 C -0.199 4.199 13 N -0.575 5.575 14 Si 0.792 3.208 15 H -0.186 1.186 16 H -0.202 1.202 17 H -0.202 1.202 18 C -0.067 4.067 19 C -0.143 4.143 20 C -0.012 4.012 21 H 0.067 0.933 22 N -0.386 5.386 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.035 0.965 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.010 0.990 35 H 0.007 0.993 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.160 0.840 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.393 -17.593 12.857 22.229 hybrid contribution 0.580 0.122 -0.499 0.775 sum 4.972 -17.471 12.359 21.970 Atomic orbital electron populations 1.21806 0.95723 1.01943 1.01644 1.21503 0.96181 0.94944 1.02401 1.21233 0.94674 0.96336 0.97117 0.90972 1.22042 0.98747 0.87337 0.97666 1.61980 1.10041 1.14850 1.39898 1.21951 0.99325 0.94048 0.90477 1.21377 0.99683 0.93196 0.98197 1.18978 0.94626 0.94438 0.93159 1.21707 1.37299 0.94184 1.04770 0.92321 1.26010 0.94850 1.04228 0.94811 1.70114 1.41351 1.36561 1.09461 0.85365 0.78131 0.78844 0.78510 1.18606 1.20234 1.20222 1.21969 0.87093 0.99559 0.98053 1.21600 1.00540 0.95297 0.96886 1.21302 0.93935 0.93534 0.92411 0.93293 1.58677 1.11523 1.20077 1.48279 0.93495 0.91777 0.92770 0.91403 0.90786 0.91930 0.94864 0.91823 0.96491 0.93357 0.93061 0.99030 0.99334 0.92751 0.94864 0.92526 0.91283 0.90522 0.84016 0.83825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.67 71.98 0.70 -1.75 16 2 C -0.11 -1.72 4.87 30.60 0.15 -1.57 16 3 C -0.07 -1.50 2.18 -10.74 -0.02 -1.53 16 4 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 5 C 0.07 1.86 4.33 86.32 0.37 2.24 16 6 N -0.54 -17.44 4.66 -896.36 -4.17 -21.62 16 7 C 0.07 2.69 4.96 86.30 0.43 3.12 16 8 C -0.09 -3.89 5.08 30.59 0.16 -3.73 16 9 C 0.03 1.43 4.97 29.85 0.15 1.58 16 10 C -0.54 -32.21 9.11 25.60 0.23 -31.98 16 11 H 0.06 3.37 7.74 -2.92 -0.02 3.34 16 12 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 13 N -0.93 -58.50 13.29 21.45 0.28 -58.21 16 14 Si 0.97 45.47 29.54 68.60 2.03 47.49 16 15 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 18 C 0.06 1.81 5.15 86.33 0.44 2.25 16 19 C -0.11 -2.32 5.77 30.65 0.18 -2.14 16 20 C 0.10 1.81 3.14 44.99 0.14 1.95 16 21 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 22 N -0.85 -14.13 7.90 -168.34 -1.33 -15.46 16 23 H 0.05 0.86 6.59 -2.39 -0.02 0.84 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 1.01 6.81 -2.39 -0.02 1.00 16 27 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.06 1.70 6.48 -2.38 -0.02 1.69 16 29 H 0.03 0.95 7.69 -2.39 -0.02 0.93 16 30 H 0.06 2.45 7.99 -2.39 -0.02 2.43 16 31 H 0.02 0.68 8.12 -2.39 -0.02 0.66 16 32 H 0.05 2.13 6.43 -2.39 -0.02 2.12 16 33 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 34 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 35 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 36 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 37 H 0.03 1.04 7.69 -2.39 -0.02 1.02 16 38 H 0.06 1.85 6.21 -2.39 -0.01 1.84 16 39 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 40 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.35 4.78 9.04 -89.70 -0.81 3.97 16 42 H 0.35 4.70 7.08 -89.70 -0.63 4.06 16 Total: -1.00 -66.18 318.98 -0.27 -66.45 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -0.47 Total: 12.53 kcal Atomic # 6 Polarization: -34.57 SS G_CDS: 3.39 Total: -31.19 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -5.22 Total: -95.29 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -66.18 -0.27 -66.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122798628.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.372 kcal (2) G-P(sol) polarization free energy of solvation -66.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds