Wall clock time and date at job start Mon Mar 30 2020 04:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46932 * 2 1 4 4 C 1.52998 * 109.47280 * 119.99890 * 2 1 3 5 5 N 1.46903 * 109.46926 * 62.89435 * 4 2 1 6 6 C 1.46961 * 110.99921 * 72.29855 * 5 4 2 7 7 C 1.53047 * 109.36460 * 183.16489 * 6 5 4 8 8 C 1.52994 * 109.48878 * 181.65576 * 7 6 5 9 9 C 1.53004 * 109.48714 * 61.61747 * 7 6 5 10 10 N 1.46956 * 109.38706 * 301.63899 * 7 6 5 11 11 C 1.46958 * 110.88032 * 59.30452 * 10 7 6 12 12 C 1.46956 * 111.00272 * 196.12661 * 5 4 2 13 13 H 1.08997 * 109.48385 * 296.77775 * 12 5 4 14 14 C 1.50700 * 109.50543 * 56.82927 * 12 5 4 15 15 H 1.07995 * 120.00163 * 5.66314 * 14 12 5 16 16 C 1.37877 * 119.99821 * 185.65576 * 14 12 5 17 17 N 1.31517 * 120.00054 * 7.29540 * 16 14 12 18 18 Si 1.86799 * 120.00047 * 187.28803 * 16 14 12 19 19 H 1.48499 * 109.47151 * 94.98635 * 18 16 14 20 20 H 1.48503 * 109.47166 * 214.98841 * 18 16 14 21 21 H 1.48503 * 109.47098 * 334.98596 * 18 16 14 22 22 H 1.08998 * 109.47442 * 300.00065 * 1 2 3 23 23 H 1.09001 * 109.47674 * 59.99754 * 1 2 3 24 24 H 1.09005 * 109.47304 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47084 * 240.00341 * 2 1 3 26 26 H 1.09005 * 109.47185 * 184.70885 * 3 2 1 27 27 H 1.09002 * 109.47279 * 304.71302 * 3 2 1 28 28 H 1.09001 * 109.47115 * 64.71109 * 3 2 1 29 29 H 1.08995 * 109.47239 * 302.89361 * 4 2 1 30 30 H 1.08996 * 109.47028 * 182.88771 * 4 2 1 31 31 H 1.08999 * 109.46835 * 63.21474 * 6 5 4 32 32 H 1.08999 * 109.51225 * 303.14737 * 6 5 4 33 33 H 1.08995 * 109.47733 * 299.95843 * 8 7 6 34 34 H 1.08996 * 109.47256 * 59.96361 * 8 7 6 35 35 H 1.09001 * 109.47071 * 179.97438 * 8 7 6 36 36 H 1.08995 * 109.47352 * 180.02562 * 9 7 6 37 37 H 1.09006 * 109.46718 * 300.04195 * 9 7 6 38 38 H 1.09001 * 109.47357 * 60.04105 * 9 7 6 39 39 H 1.00903 * 110.99835 * 295.43931 * 10 7 6 40 40 H 1.09001 * 109.48714 * 60.64709 * 11 10 7 41 41 H 1.09001 * 109.48832 * 180.71530 * 11 10 7 42 42 H 0.96996 * 120.00142 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6083 -2.1249 1.2148 6 6 2.3596 -2.8823 0.2040 7 6 1.8272 -4.3160 0.1447 8 6 2.6347 -5.1185 -0.8773 9 6 0.3545 -4.2968 -0.2699 10 7 1.9555 -4.9392 1.4694 11 6 1.2038 -4.1816 2.4797 12 6 1.7366 -2.7481 2.5394 13 1 2.7857 -2.7621 2.8345 14 6 0.9415 -1.9577 3.5465 15 1 0.3225 -1.1352 3.2203 16 6 1.0044 -2.2849 4.8844 17 7 1.8638 -3.1893 5.3006 18 14 -0.1310 -1.4434 6.1060 19 1 -1.3366 -2.2833 6.3210 20 1 0.5801 -1.2586 7.3966 21 1 -0.5390 -0.1193 5.5717 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1267 1.4437 -0.0844 27 1 1.6093 1.9802 -0.8448 28 1 1.7471 1.9314 0.9292 29 1 1.6350 -0.2382 2.1384 30 1 3.1287 -0.6766 1.2754 31 1 3.4159 -2.8976 0.4724 32 1 2.2384 -2.4088 -0.7702 33 1 2.5399 -4.6557 -1.8596 34 1 3.6837 -5.1321 -0.5818 35 1 2.2555 -6.1396 -0.9190 36 1 -0.0246 -5.3179 -0.3116 37 1 -0.2206 -3.7250 0.4585 38 1 0.2595 -3.8339 -1.2521 39 1 2.9250 -5.0308 1.7335 40 1 0.1475 -4.1660 2.2110 41 1 1.3247 -4.6554 3.4539 42 1 1.9077 -3.4197 6.2418 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220417766.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:37 Heat of formation + Delta-G solvation = -9.487145 kcal Electronic energy + Delta-G solvation = -19110.880558 eV Core-core repulsion = 16511.081001 eV Total energy + Delta-G solvation = -2599.799557 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.08731 -35.98478 -33.82375 -32.17719 -31.07155 -27.46167 -26.90612 -26.64348 -25.81980 -24.01196 -22.70362 -20.26973 -19.24450 -18.22929 -16.40446 -15.33980 -15.04633 -14.58334 -14.10538 -13.95742 -13.81860 -13.54840 -12.89484 -12.73442 -12.28492 -11.88603 -11.82939 -11.78333 -11.50211 -11.43331 -11.28390 -10.97930 -10.88152 -10.72796 -10.51172 -10.34401 -10.29060 -10.19793 -10.05284 -9.87050 -9.59713 -9.13350 -8.50185 -7.49032 -7.09036 -6.07932 -4.08087 3.28672 3.36189 3.38894 4.38314 4.80639 5.05375 5.25499 5.34029 5.42104 5.50662 5.58243 5.69973 5.77668 5.96724 5.98246 6.07155 6.08889 6.16321 6.26500 6.29885 6.32716 6.40167 6.42655 6.48146 6.56654 6.63042 6.69011 6.77632 6.88221 6.91597 6.98934 7.07838 7.26703 7.62894 7.76253 7.89318 8.11069 8.18129 8.35368 8.59242 8.99003 9.55357 11.01077 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017060 B = 0.010843 C = 0.007504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.911185 B = 2581.706789 C = 3730.271543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.091 4.091 3 C -0.145 4.145 4 C 0.066 3.934 5 N -0.524 5.524 6 C 0.031 3.969 7 C 0.111 3.889 8 C -0.136 4.136 9 C -0.125 4.125 10 N -0.688 5.688 11 C 0.071 3.929 12 C 0.186 3.814 13 H 0.001 0.999 14 C -0.503 4.503 15 H 0.064 0.936 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.288 1.288 21 H -0.274 1.274 22 H 0.049 0.951 23 H 0.034 0.966 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.012 0.988 31 H 0.014 0.986 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.046 0.954 37 H 0.074 0.926 38 H 0.043 0.957 39 H 0.328 0.672 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.305 1.803 -10.252 10.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.110 4.110 3 C -0.202 4.202 4 C -0.062 4.062 5 N -0.248 5.248 6 C -0.100 4.100 7 C 0.019 3.981 8 C -0.194 4.194 9 C -0.182 4.182 10 N -0.317 5.317 11 C -0.058 4.058 12 C 0.078 3.922 13 H 0.019 0.981 14 C -0.542 4.542 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.215 1.215 21 H -0.199 1.199 22 H 0.068 0.932 23 H 0.053 0.947 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.031 0.969 31 H 0.032 0.968 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.144 0.856 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.653 1.224 -10.307 10.400 hybrid contribution 1.030 1.277 1.126 1.990 sum 0.377 2.501 -9.182 9.524 Atomic orbital electron populations 1.21647 0.94889 1.02578 0.99750 1.21109 0.96635 0.94722 0.98552 1.21812 1.00251 0.96851 1.01332 1.22070 0.95980 0.90091 0.98050 1.62108 1.53934 1.00908 1.07881 1.22795 0.94610 0.95762 0.96802 1.20889 0.96043 0.90702 0.90462 1.21799 0.99313 1.00345 0.97961 1.21690 0.95218 1.00850 1.00489 1.60996 1.16167 1.52356 1.02150 1.22224 0.96958 0.92688 0.93962 1.19882 0.95608 0.92779 0.83929 0.98142 1.21036 1.26878 1.15728 0.90585 0.91759 1.24939 0.95326 0.95456 0.98282 1.69944 1.34559 1.32827 1.15654 0.86559 0.80951 0.79837 0.80536 1.20624 1.21452 1.19903 0.93232 0.94688 0.91276 0.92442 0.93447 0.93299 0.92710 0.89187 0.96932 0.96750 0.92117 0.92888 0.93411 0.92136 0.93473 0.90711 0.93759 0.85624 0.92025 0.89426 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 9.06 37.16 0.34 -1.75 16 2 C -0.09 -1.46 2.92 -90.62 -0.26 -1.72 16 3 C -0.14 -2.00 9.19 37.16 0.34 -1.66 16 4 C 0.07 1.30 4.19 -3.82 -0.02 1.28 16 5 N -0.52 -10.79 3.15 -227.89 -0.72 -11.51 16 6 C 0.03 0.56 4.14 -3.77 -0.02 0.55 16 7 C 0.11 1.92 0.95 -131.55 -0.12 1.80 16 8 C -0.14 -1.95 8.73 37.15 0.32 -1.62 16 9 C -0.12 -2.11 8.12 37.16 0.30 -1.81 16 10 N -0.69 -13.62 6.35 -99.84 -0.63 -14.26 16 11 C 0.07 1.64 5.44 -3.77 -0.02 1.61 16 12 C 0.19 4.50 1.81 -68.81 -0.12 4.37 16 13 H 0.00 0.03 8.10 -51.93 -0.42 -0.39 16 14 C -0.50 -13.26 7.47 -34.44 -0.26 -13.52 16 15 H 0.06 1.71 6.86 -52.49 -0.36 1.35 16 16 C 0.06 1.67 5.25 -17.82 -0.09 1.57 16 17 N -0.89 -24.90 12.08 55.43 0.67 -24.23 16 18 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.07 1.20 7.69 -51.93 -0.40 0.80 16 25 H 0.06 0.90 6.62 -51.93 -0.34 0.56 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.97 6.00 -51.93 -0.31 1.66 16 30 H 0.01 0.25 8.05 -51.93 -0.42 -0.17 16 31 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 1.03 6.56 -51.93 -0.34 0.68 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.44 5.94 -51.93 -0.31 1.14 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.33 6.48 8.80 -39.29 -0.35 6.13 16 40 H 0.06 1.47 6.35 -51.93 -0.33 1.14 16 41 H 0.09 2.27 6.88 -51.93 -0.36 1.91 16 42 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 315.43 15.07 4.75 4.75 Total: -1.00 -26.42 315.43 -8.28 -34.70 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -7.72 Total: 5.44 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 0.39 Total: -10.89 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.68 Total: -49.99 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.42 -8.28 -34.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220417766.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.212 kcal (2) G-P(sol) polarization free energy of solvation -26.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds