Wall clock time and date at job start Mon Mar 30 2020 04:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46932 * 2 1 4 4 C 1.52998 * 109.47280 * 119.99890 * 2 1 3 5 5 N 1.46903 * 109.46926 * 62.89435 * 4 2 1 6 6 C 1.46961 * 110.99921 * 72.29855 * 5 4 2 7 7 C 1.53047 * 109.36460 * 183.16489 * 6 5 4 8 8 C 1.52994 * 109.48878 * 181.65576 * 7 6 5 9 9 C 1.53004 * 109.48714 * 61.61747 * 7 6 5 10 10 N 1.46956 * 109.38706 * 301.63899 * 7 6 5 11 11 C 1.46958 * 110.88032 * 59.30452 * 10 7 6 12 12 C 1.46956 * 111.00272 * 196.12661 * 5 4 2 13 13 H 1.08997 * 109.48385 * 296.77775 * 12 5 4 14 14 C 1.50700 * 109.50543 * 56.82927 * 12 5 4 15 15 H 1.07995 * 120.00163 * 5.66314 * 14 12 5 16 16 C 1.37877 * 119.99821 * 185.65576 * 14 12 5 17 17 N 1.31517 * 120.00054 * 7.29540 * 16 14 12 18 18 Si 1.86799 * 120.00047 * 187.28803 * 16 14 12 19 19 H 1.48499 * 109.47151 * 94.98635 * 18 16 14 20 20 H 1.48503 * 109.47166 * 214.98841 * 18 16 14 21 21 H 1.48503 * 109.47098 * 334.98596 * 18 16 14 22 22 H 1.08998 * 109.47442 * 300.00065 * 1 2 3 23 23 H 1.09001 * 109.47674 * 59.99754 * 1 2 3 24 24 H 1.09005 * 109.47304 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47084 * 240.00341 * 2 1 3 26 26 H 1.09005 * 109.47185 * 184.70885 * 3 2 1 27 27 H 1.09002 * 109.47279 * 304.71302 * 3 2 1 28 28 H 1.09001 * 109.47115 * 64.71109 * 3 2 1 29 29 H 1.08995 * 109.47239 * 302.89361 * 4 2 1 30 30 H 1.08996 * 109.47028 * 182.88771 * 4 2 1 31 31 H 1.08999 * 109.46835 * 63.21474 * 6 5 4 32 32 H 1.08999 * 109.51225 * 303.14737 * 6 5 4 33 33 H 1.08995 * 109.47733 * 299.95843 * 8 7 6 34 34 H 1.08996 * 109.47256 * 59.96361 * 8 7 6 35 35 H 1.09001 * 109.47071 * 179.97438 * 8 7 6 36 36 H 1.08995 * 109.47352 * 180.02562 * 9 7 6 37 37 H 1.09006 * 109.46718 * 300.04195 * 9 7 6 38 38 H 1.09001 * 109.47357 * 60.04105 * 9 7 6 39 39 H 1.00903 * 110.99835 * 295.43931 * 10 7 6 40 40 H 1.09001 * 109.48714 * 60.64709 * 11 10 7 41 41 H 1.09001 * 109.48832 * 180.71530 * 11 10 7 42 42 H 0.96996 * 120.00142 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6083 -2.1249 1.2148 6 6 2.3596 -2.8823 0.2040 7 6 1.8272 -4.3160 0.1447 8 6 2.6347 -5.1185 -0.8773 9 6 0.3545 -4.2968 -0.2699 10 7 1.9555 -4.9392 1.4694 11 6 1.2038 -4.1816 2.4797 12 6 1.7366 -2.7481 2.5394 13 1 2.7857 -2.7621 2.8345 14 6 0.9415 -1.9577 3.5465 15 1 0.3225 -1.1352 3.2203 16 6 1.0044 -2.2849 4.8844 17 7 1.8638 -3.1893 5.3006 18 14 -0.1310 -1.4434 6.1060 19 1 -1.3366 -2.2833 6.3210 20 1 0.5801 -1.2586 7.3966 21 1 -0.5390 -0.1193 5.5717 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1267 1.4437 -0.0844 27 1 1.6093 1.9802 -0.8448 28 1 1.7471 1.9314 0.9292 29 1 1.6350 -0.2382 2.1384 30 1 3.1287 -0.6766 1.2754 31 1 3.4159 -2.8976 0.4724 32 1 2.2384 -2.4088 -0.7702 33 1 2.5399 -4.6557 -1.8596 34 1 3.6837 -5.1321 -0.5818 35 1 2.2555 -6.1396 -0.9190 36 1 -0.0246 -5.3179 -0.3116 37 1 -0.2206 -3.7250 0.4585 38 1 0.2595 -3.8339 -1.2521 39 1 2.9250 -5.0308 1.7335 40 1 0.1475 -4.1660 2.2110 41 1 1.3247 -4.6554 3.4539 42 1 1.9077 -3.4197 6.2418 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220417766.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:37 Heat of formation + Delta-G solvation = -26.011387 kcal Electronic energy + Delta-G solvation = -19111.597103 eV Core-core repulsion = 16511.081001 eV Total energy + Delta-G solvation = -2600.516102 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.70781 -37.40943 -35.60818 -33.88116 -32.78084 -29.24068 -28.22953 -27.84858 -27.33875 -25.87558 -24.32964 -22.00843 -20.64520 -19.82234 -18.44676 -17.05039 -16.58649 -16.25901 -15.64671 -15.60244 -15.23994 -15.15250 -14.42481 -14.30684 -13.83810 -13.40948 -13.27139 -13.11079 -12.91335 -12.84504 -12.74233 -12.60898 -12.58439 -12.39630 -12.11404 -11.82115 -11.79881 -11.72110 -11.63693 -11.47978 -11.32361 -10.90105 -10.57691 -9.19834 -8.82978 -8.16091 -6.22289 1.39102 1.41395 1.50559 2.40254 3.14155 3.22172 3.51396 3.97921 4.07925 4.19344 4.22704 4.31836 4.41919 4.59250 4.65568 4.69332 4.80350 4.87403 4.91549 4.92638 4.98187 5.03592 5.08828 5.11796 5.12689 5.18396 5.21324 5.28992 5.33286 5.39350 5.53357 5.57877 5.66150 5.67248 5.72824 6.06073 6.31996 6.43144 6.61445 6.75323 6.93361 7.44553 8.92257 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017060 B = 0.010843 C = 0.007504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.911185 B = 2581.706789 C = 3730.271543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.083 4.083 3 C -0.140 4.140 4 C 0.068 3.932 5 N -0.522 5.522 6 C 0.032 3.968 7 C 0.105 3.895 8 C -0.128 4.128 9 C -0.119 4.119 10 N -0.684 5.684 11 C 0.089 3.911 12 C 0.196 3.804 13 H -0.044 1.044 14 C -0.512 4.512 15 H 0.057 0.943 16 C 0.016 3.984 17 N -0.920 5.920 18 Si 0.953 3.047 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.269 1.269 22 H 0.035 0.965 23 H 0.063 0.937 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.001 0.999 31 H 0.003 0.997 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.045 0.955 38 H 0.069 0.931 39 H 0.326 0.674 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.206 2.399 -12.487 12.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.102 4.102 3 C -0.198 4.198 4 C -0.060 4.060 5 N -0.245 5.245 6 C -0.098 4.098 7 C 0.014 3.986 8 C -0.186 4.186 9 C -0.176 4.176 10 N -0.312 5.312 11 C -0.041 4.041 12 C 0.087 3.913 13 H -0.027 1.027 14 C -0.551 4.551 15 H 0.076 0.924 16 C -0.183 4.183 17 N -0.559 5.559 18 Si 0.779 3.221 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.193 1.193 22 H 0.054 0.946 23 H 0.082 0.918 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.020 0.980 31 H 0.021 0.979 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.143 0.857 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.164 1.825 -12.568 12.753 hybrid contribution 1.222 1.102 1.777 2.422 sum 0.058 2.927 -10.790 11.181 Atomic orbital electron populations 1.21590 0.94621 1.01645 1.00495 1.21054 0.96724 0.95783 0.96592 1.21778 1.00742 0.95270 1.02031 1.22081 0.95200 0.89701 0.99055 1.62120 1.54478 1.01537 1.06407 1.22891 0.93590 0.96413 0.96891 1.21133 0.97259 0.90462 0.89750 1.21734 0.98732 1.00257 0.97844 1.21627 0.94108 1.01004 1.00880 1.60986 1.15729 1.51867 1.02650 1.21797 0.96806 0.92067 0.93456 1.19633 0.92475 0.93631 0.85564 1.02702 1.21265 1.26751 1.15661 0.91453 0.92450 1.25659 0.96550 0.96149 0.99985 1.70064 1.35875 1.34101 1.15875 0.85613 0.79140 0.79034 0.78292 1.20128 1.21233 1.19342 0.94594 0.91794 0.93037 0.91231 0.92888 0.90798 0.93504 0.92175 0.98029 0.97930 0.89598 0.90358 0.93166 0.91478 0.92843 0.93609 0.91235 0.85738 0.92800 0.92743 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 9.06 71.98 0.65 -3.12 16 2 C -0.08 -2.49 2.92 -10.80 -0.03 -2.52 16 3 C -0.14 -3.55 9.19 71.98 0.66 -2.89 16 4 C 0.07 2.68 4.19 86.30 0.36 3.04 16 5 N -0.52 -21.70 3.15 -874.90 -2.76 -24.45 16 6 C 0.03 1.14 4.14 86.31 0.36 1.49 16 7 C 0.11 3.49 0.95 3.53 0.00 3.49 16 8 C -0.13 -3.25 8.73 71.98 0.63 -2.63 16 9 C -0.12 -3.77 8.12 71.98 0.58 -3.19 16 10 N -0.68 -27.20 6.35 -469.77 -2.98 -30.19 16 11 C 0.09 4.25 5.44 86.31 0.47 4.72 16 12 C 0.20 9.86 1.81 44.17 0.08 9.94 16 13 H -0.04 -2.61 8.10 -2.39 -0.02 -2.63 16 14 C -0.51 -27.97 7.47 25.60 0.19 -27.78 16 15 H 0.06 3.15 6.86 -2.91 -0.02 3.13 16 16 C 0.02 0.87 5.25 84.65 0.44 1.32 16 17 N -0.92 -53.23 12.08 21.45 0.26 -52.97 16 18 Si 0.95 43.92 29.54 68.60 2.03 45.95 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 20 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.05 1.71 7.69 -2.38 -0.02 1.70 16 25 H 0.07 1.95 6.62 -2.39 -0.02 1.94 16 26 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 27 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 2.72 6.00 -2.39 -0.01 2.70 16 30 H 0.00 0.06 8.05 -2.39 -0.02 0.04 16 31 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.09 2.64 6.56 -2.39 -0.02 2.62 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.04 1.73 5.94 -2.38 -0.01 1.71 16 38 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.33 13.12 8.80 -89.69 -0.79 12.33 16 40 H 0.05 2.64 6.35 -2.39 -0.02 2.63 16 41 H 0.05 2.96 6.88 -2.39 -0.02 2.94 16 42 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -58.90 315.43 1.13 -57.77 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.18 Total: 22.00 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 4.40 Total: -18.11 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -5.48 Total: -107.61 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -58.90 1.13 -57.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220417766.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.759 kcal (2) G-P(sol) polarization free energy of solvation -58.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds