Wall clock time and date at job start Mon Mar 30 2020 04:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47018 * 2 1 4 4 C 1.53005 * 109.46738 * 120.00083 * 2 1 3 5 5 N 1.46897 * 109.47077 * 63.69055 * 4 2 1 6 6 C 1.48063 * 111.00102 * 75.87256 * 5 4 2 7 7 C 1.50747 * 112.93358 * 84.35321 * 6 5 4 8 8 C 1.54514 * 108.93902 * 92.65074 * 7 6 5 9 9 N 1.40077 * 111.51647 * 283.97947 * 8 7 6 10 10 C 1.46903 * 111.00145 * 188.14248 * 9 8 7 11 11 C 1.47697 * 114.56655 * 61.44990 * 9 8 7 12 12 C 1.47748 * 110.99745 * 203.47663 * 5 4 2 13 13 H 1.09005 * 108.99093 * 313.43119 * 12 5 4 14 14 C 1.50702 * 108.99546 * 72.17882 * 12 5 4 15 15 H 1.08004 * 119.99588 * 2.40192 * 14 12 5 16 16 C 1.37872 * 120.00070 * 182.40838 * 14 12 5 17 17 N 1.31521 * 119.99810 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 120.00240 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.46904 * 89.99686 * 18 16 14 20 20 H 1.48500 * 109.47086 * 210.00112 * 18 16 14 21 21 H 1.48503 * 109.46667 * 329.99697 * 18 16 14 22 22 H 1.08998 * 109.47129 * 300.00416 * 1 2 3 23 23 H 1.09002 * 109.47183 * 59.99397 * 1 2 3 24 24 H 1.08995 * 109.47388 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46678 * 239.99743 * 2 1 3 26 26 H 1.08998 * 109.47359 * 57.81205 * 3 2 1 27 27 H 1.09005 * 109.46497 * 177.80899 * 3 2 1 28 28 H 1.08997 * 109.47238 * 297.80885 * 3 2 1 29 29 H 1.08999 * 109.46983 * 303.68785 * 4 2 1 30 30 H 1.08997 * 109.46326 * 183.69104 * 4 2 1 31 31 H 1.08995 * 108.79212 * 323.45947 * 6 5 4 32 32 H 1.09006 * 108.78752 * 205.23750 * 6 5 4 33 33 H 1.08997 * 109.55607 * 332.81528 * 7 6 5 34 34 H 1.08994 * 109.55789 * 212.49140 * 7 6 5 35 35 H 1.09004 * 109.06902 * 163.45302 * 8 7 6 36 36 H 1.08999 * 109.01585 * 44.47268 * 8 7 6 37 37 H 1.08998 * 109.46981 * 291.37088 * 10 9 8 38 38 H 1.09007 * 109.46767 * 51.36263 * 10 9 8 39 39 H 1.08995 * 109.47634 * 171.36338 * 10 9 8 40 40 H 1.09003 * 109.73567 * 38.35269 * 11 9 8 41 41 H 1.08996 * 109.73446 * 159.04619 * 11 9 8 42 42 H 0.97002 * 119.99343 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6244 -2.1296 1.2055 6 6 2.4542 -2.8982 0.2501 7 6 3.7468 -3.3850 0.8540 8 6 3.5334 -4.8089 1.4148 9 7 2.8253 -4.7843 2.6232 10 6 2.7954 -6.1158 3.2431 11 6 1.4659 -4.2148 2.5268 12 6 1.5839 -2.7121 2.5627 13 1 2.4970 -2.4405 3.0926 14 6 0.4014 -2.1449 3.3049 15 1 -0.2701 -1.4602 2.8081 16 6 0.1768 -2.4999 4.6181 17 7 0.9943 -3.3339 5.2228 18 14 -1.2886 -1.7962 5.5384 19 1 -2.4620 -2.6880 5.3564 20 1 -0.9633 -1.6948 6.9837 21 1 -1.6054 -0.4464 5.0064 22 1 -0.3633 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8932 -0.5139 -0.8899 26 1 1.6450 1.9676 0.8697 27 1 3.1293 1.4427 0.0393 28 1 1.7091 1.9449 -0.9089 29 1 1.6236 -0.2470 2.1380 30 1 3.1279 -0.6643 1.2829 31 1 2.6836 -2.2633 -0.6056 32 1 1.8829 -3.7591 -0.0975 33 1 4.0472 -2.7163 1.6606 34 1 4.5219 -3.4068 0.0881 35 1 4.5044 -5.2756 1.5805 36 1 2.9752 -5.3974 0.6868 37 1 2.1789 -6.7831 2.6410 38 1 3.8093 -6.5120 3.3018 39 1 2.3763 -6.0402 4.2464 40 1 1.0022 -4.5254 1.5905 41 1 0.8631 -4.5569 3.3680 42 1 0.8365 -3.5833 6.1469 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220420684.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:19 Heat of formation + Delta-G solvation = 7.877701 kcal Electronic energy + Delta-G solvation = -19065.867290 eV Core-core repulsion = 16466.820729 eV Total energy + Delta-G solvation = -2599.046561 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.88499 -36.28259 -33.77187 -33.07153 -30.74153 -28.19081 -26.60067 -26.08697 -25.18754 -23.63858 -22.63251 -20.26368 -19.19286 -18.45615 -16.34066 -15.66863 -14.85642 -14.64948 -14.37266 -14.07265 -13.76836 -13.49233 -13.23541 -12.46572 -12.29324 -12.11958 -11.79327 -11.70981 -11.38506 -11.22778 -11.11138 -10.90560 -10.79554 -10.73265 -10.46707 -10.41385 -10.17915 -9.94600 -9.89339 -9.72212 -9.46442 -8.97583 -8.32952 -7.20172 -6.95906 -5.90486 -3.96952 3.34528 3.41515 3.44976 4.45842 4.90504 4.97709 5.38391 5.38900 5.48015 5.50827 5.60399 5.72708 5.85120 6.00877 6.07162 6.12211 6.13624 6.19391 6.21586 6.32569 6.35478 6.42734 6.43762 6.53097 6.60132 6.64201 6.66801 6.73401 6.90512 6.98391 7.02837 7.08877 7.38440 7.66123 7.94147 8.14250 8.27295 8.31020 8.50652 8.74878 9.14309 9.66861 11.12728 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.014831 B = 0.012526 C = 0.007314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.443152 B = 2234.817971 C = 3827.498043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.090 4.090 3 C -0.145 4.145 4 C 0.072 3.928 5 N -0.539 5.539 6 C 0.057 3.943 7 C -0.147 4.147 8 C 0.083 3.917 9 N -0.554 5.554 10 C 0.043 3.957 11 C 0.088 3.912 12 C 0.224 3.776 13 H 0.018 0.982 14 C -0.500 4.500 15 H 0.062 0.938 16 C 0.058 3.942 17 N -0.880 5.880 18 Si 0.890 3.110 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.275 1.275 22 H 0.049 0.951 23 H 0.033 0.967 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.016 0.984 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.004 0.996 37 H 0.007 0.993 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.010 0.990 41 H 0.102 0.898 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.286 1.015 -8.032 8.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.109 4.109 3 C -0.203 4.203 4 C -0.057 4.057 5 N -0.264 5.264 6 C -0.071 4.071 7 C -0.187 4.187 8 C -0.047 4.047 9 N -0.278 5.278 10 C -0.105 4.105 11 C -0.038 4.038 12 C 0.118 3.882 13 H 0.035 0.965 14 C -0.539 4.539 15 H 0.080 0.920 16 C -0.144 4.144 17 N -0.519 5.519 18 Si 0.718 3.282 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.200 1.200 22 H 0.068 0.932 23 H 0.052 0.948 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.022 0.978 37 H 0.026 0.974 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.028 0.972 41 H 0.120 0.880 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.091 1.191 -7.730 8.410 hybrid contribution -0.276 -0.254 0.353 0.515 sum 2.815 0.937 -7.377 7.951 Atomic orbital electron populations 1.21652 0.94899 1.02690 0.99660 1.21117 0.96658 0.94535 0.98604 1.21818 1.00342 0.96977 1.01128 1.21950 0.95983 0.90034 0.97746 1.62151 1.50686 1.00867 1.12687 1.21897 0.91904 0.97785 0.95557 1.22044 0.98772 0.97487 1.00353 1.20913 0.97164 0.95838 0.90780 1.58968 1.21209 1.22604 1.25012 1.22175 0.99379 0.88942 1.00002 1.22084 0.85494 0.96861 0.99411 1.19005 0.97019 0.90030 0.82174 0.96484 1.21179 1.10443 1.26795 0.95512 0.91958 1.24952 0.96429 0.95531 0.97496 1.70039 1.36393 1.33688 1.11794 0.86634 0.83095 0.79549 0.78914 1.20917 1.21518 1.20018 0.93196 0.94834 0.91174 0.92352 0.92771 0.93395 0.93408 0.90114 0.96599 0.92882 0.92520 0.90953 0.92532 0.92943 0.97799 0.97436 0.93425 0.90852 0.97197 0.87970 0.93266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 9.07 37.16 0.34 -1.83 16 2 C -0.09 -1.45 2.96 -90.62 -0.27 -1.72 16 3 C -0.14 -1.99 9.19 37.16 0.34 -1.65 16 4 C 0.07 1.38 4.12 -3.82 -0.02 1.37 16 5 N -0.54 -11.36 3.73 -229.09 -0.85 -12.21 16 6 C 0.06 1.05 4.98 -4.31 -0.02 1.03 16 7 C -0.15 -2.61 5.56 -27.07 -0.15 -2.76 16 8 C 0.08 1.53 4.96 -6.56 -0.03 1.50 16 9 N -0.55 -11.83 4.23 -248.01 -1.05 -12.88 16 10 C 0.04 0.82 9.45 60.07 0.57 1.38 16 11 C 0.09 2.08 4.46 -4.50 -0.02 2.06 16 12 C 0.22 5.49 1.24 -69.51 -0.09 5.41 16 13 H 0.02 0.49 7.08 -51.93 -0.37 0.12 16 14 C -0.50 -13.34 7.67 -34.44 -0.26 -13.60 16 15 H 0.06 1.68 7.80 -52.48 -0.41 1.27 16 16 C 0.06 1.55 5.02 -17.82 -0.09 1.46 16 17 N -0.88 -24.41 11.61 55.43 0.64 -23.76 16 18 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 1.29 7.71 -51.93 -0.40 0.89 16 25 H 0.06 0.92 6.70 -51.93 -0.35 0.57 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 1.75 7.08 -51.93 -0.37 1.38 16 30 H 0.02 0.30 7.51 -51.93 -0.39 -0.09 16 31 H 0.05 0.88 6.41 -51.93 -0.33 0.55 16 32 H 0.06 1.07 6.52 -51.93 -0.34 0.74 16 33 H 0.07 1.46 6.73 -51.93 -0.35 1.11 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.88 7.85 -51.93 -0.41 0.47 16 36 H 0.00 0.08 7.59 -51.93 -0.39 -0.32 16 37 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 38 H 0.05 0.79 7.88 -51.92 -0.41 0.38 16 39 H 0.07 1.50 8.07 -51.93 -0.42 1.08 16 40 H 0.01 0.23 6.77 -51.93 -0.35 -0.12 16 41 H 0.10 2.71 5.59 -51.93 -0.29 2.42 16 42 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 311.71 15.07 4.70 4.70 Total: -1.00 -27.02 311.71 -8.96 -35.98 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -7.67 Total: -0.54 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 0.30 Total: -7.36 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -1.26 Total: -48.85 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.02 -8.96 -35.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220420684.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.857 kcal (2) G-P(sol) polarization free energy of solvation -27.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds