Wall clock time and date at job start Mon Mar 30 2020 04:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47018 * 2 1 4 4 C 1.53005 * 109.46738 * 120.00083 * 2 1 3 5 5 N 1.46897 * 109.47077 * 63.69055 * 4 2 1 6 6 C 1.48063 * 111.00102 * 75.87256 * 5 4 2 7 7 C 1.50747 * 112.93358 * 84.35321 * 6 5 4 8 8 C 1.54514 * 108.93902 * 92.65074 * 7 6 5 9 9 N 1.40077 * 111.51647 * 283.97947 * 8 7 6 10 10 C 1.46903 * 111.00145 * 188.14248 * 9 8 7 11 11 C 1.47697 * 114.56655 * 61.44990 * 9 8 7 12 12 C 1.47748 * 110.99745 * 203.47663 * 5 4 2 13 13 H 1.09005 * 108.99093 * 313.43119 * 12 5 4 14 14 C 1.50702 * 108.99546 * 72.17882 * 12 5 4 15 15 H 1.08004 * 119.99588 * 2.40192 * 14 12 5 16 16 C 1.37872 * 120.00070 * 182.40838 * 14 12 5 17 17 N 1.31521 * 119.99810 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 120.00240 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.46904 * 89.99686 * 18 16 14 20 20 H 1.48500 * 109.47086 * 210.00112 * 18 16 14 21 21 H 1.48503 * 109.46667 * 329.99697 * 18 16 14 22 22 H 1.08998 * 109.47129 * 300.00416 * 1 2 3 23 23 H 1.09002 * 109.47183 * 59.99397 * 1 2 3 24 24 H 1.08995 * 109.47388 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46678 * 239.99743 * 2 1 3 26 26 H 1.08998 * 109.47359 * 57.81205 * 3 2 1 27 27 H 1.09005 * 109.46497 * 177.80899 * 3 2 1 28 28 H 1.08997 * 109.47238 * 297.80885 * 3 2 1 29 29 H 1.08999 * 109.46983 * 303.68785 * 4 2 1 30 30 H 1.08997 * 109.46326 * 183.69104 * 4 2 1 31 31 H 1.08995 * 108.79212 * 323.45947 * 6 5 4 32 32 H 1.09006 * 108.78752 * 205.23750 * 6 5 4 33 33 H 1.08997 * 109.55607 * 332.81528 * 7 6 5 34 34 H 1.08994 * 109.55789 * 212.49140 * 7 6 5 35 35 H 1.09004 * 109.06902 * 163.45302 * 8 7 6 36 36 H 1.08999 * 109.01585 * 44.47268 * 8 7 6 37 37 H 1.08998 * 109.46981 * 291.37088 * 10 9 8 38 38 H 1.09007 * 109.46767 * 51.36263 * 10 9 8 39 39 H 1.08995 * 109.47634 * 171.36338 * 10 9 8 40 40 H 1.09003 * 109.73567 * 38.35269 * 11 9 8 41 41 H 1.08996 * 109.73446 * 159.04619 * 11 9 8 42 42 H 0.97002 * 119.99343 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6244 -2.1296 1.2055 6 6 2.4542 -2.8982 0.2501 7 6 3.7468 -3.3850 0.8540 8 6 3.5334 -4.8089 1.4148 9 7 2.8253 -4.7843 2.6232 10 6 2.7954 -6.1158 3.2431 11 6 1.4659 -4.2148 2.5268 12 6 1.5839 -2.7121 2.5627 13 1 2.4970 -2.4405 3.0926 14 6 0.4014 -2.1449 3.3049 15 1 -0.2701 -1.4602 2.8081 16 6 0.1768 -2.4999 4.6181 17 7 0.9943 -3.3339 5.2228 18 14 -1.2886 -1.7962 5.5384 19 1 -2.4620 -2.6880 5.3564 20 1 -0.9633 -1.6948 6.9837 21 1 -1.6054 -0.4464 5.0064 22 1 -0.3633 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8932 -0.5139 -0.8899 26 1 1.6450 1.9676 0.8697 27 1 3.1293 1.4427 0.0393 28 1 1.7091 1.9449 -0.9089 29 1 1.6236 -0.2470 2.1380 30 1 3.1279 -0.6643 1.2829 31 1 2.6836 -2.2633 -0.6056 32 1 1.8829 -3.7591 -0.0975 33 1 4.0472 -2.7163 1.6606 34 1 4.5219 -3.4068 0.0881 35 1 4.5044 -5.2756 1.5805 36 1 2.9752 -5.3974 0.6868 37 1 2.1789 -6.7831 2.6410 38 1 3.8093 -6.5120 3.3018 39 1 2.3763 -6.0402 4.2464 40 1 1.0022 -4.5254 1.5905 41 1 0.8631 -4.5569 3.3680 42 1 0.8365 -3.5833 6.1469 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220420684.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:19 Heat of formation + Delta-G solvation = -8.757158 kcal Electronic energy + Delta-G solvation = -19066.588632 eV Core-core repulsion = 16466.820729 eV Total energy + Delta-G solvation = -2599.767902 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.53056 -37.78628 -35.46856 -34.78412 -32.49174 -29.89858 -27.84566 -27.73562 -26.97653 -25.21056 -24.37383 -21.77223 -20.83741 -20.05733 -18.31106 -17.35264 -16.52776 -16.20033 -16.16476 -15.76475 -15.31650 -14.90179 -14.64930 -14.25761 -13.81093 -13.56659 -13.27402 -13.07737 -13.02655 -12.87362 -12.79236 -12.57715 -12.51733 -12.44656 -12.10039 -11.93534 -11.64434 -11.62472 -11.44190 -11.36839 -11.08964 -10.86566 -10.38891 -8.85259 -8.68204 -7.98133 -6.11260 1.43203 1.44738 1.53957 2.46966 3.18421 3.38891 3.40871 3.97369 4.06095 4.14025 4.27027 4.33669 4.43393 4.56295 4.62532 4.67477 4.71800 4.77442 4.89822 4.91862 4.95754 4.97790 5.03600 5.05744 5.08648 5.16371 5.21349 5.23366 5.34423 5.39303 5.46400 5.61880 5.69469 5.77328 5.83120 6.35267 6.45198 6.54573 6.77063 6.95548 7.08834 7.56363 9.03249 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.014831 B = 0.012526 C = 0.007314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.443152 B = 2234.817971 C = 3827.498043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.083 4.083 3 C -0.140 4.140 4 C 0.076 3.924 5 N -0.547 5.547 6 C 0.057 3.943 7 C -0.140 4.140 8 C 0.079 3.921 9 N -0.573 5.573 10 C 0.047 3.953 11 C 0.103 3.897 12 C 0.238 3.762 13 H -0.026 1.026 14 C -0.514 4.514 15 H 0.052 0.948 16 C 0.015 3.985 17 N -0.902 5.902 18 Si 0.948 3.052 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.273 1.273 22 H 0.033 0.967 23 H 0.061 0.939 24 H 0.046 0.954 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.016 0.984 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.013 0.987 37 H 0.018 0.982 38 H 0.075 0.925 39 H 0.049 0.951 40 H 0.007 0.993 41 H 0.070 0.930 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.810 1.298 -9.848 10.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.102 4.102 3 C -0.197 4.197 4 C -0.052 4.052 5 N -0.272 5.272 6 C -0.071 4.071 7 C -0.180 4.180 8 C -0.051 4.051 9 N -0.297 5.297 10 C -0.101 4.101 11 C -0.024 4.024 12 C 0.131 3.869 13 H -0.009 1.009 14 C -0.553 4.553 15 H 0.070 0.930 16 C -0.184 4.184 17 N -0.541 5.541 18 Si 0.774 3.226 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.198 1.198 22 H 0.053 0.947 23 H 0.080 0.920 24 H 0.065 0.935 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.030 0.970 37 H 0.037 0.963 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.025 0.975 41 H 0.088 0.912 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.623 1.474 -9.564 10.333 hybrid contribution -0.401 -0.348 0.897 1.042 sum 3.222 1.127 -8.668 9.315 Atomic orbital electron populations 1.21590 0.95237 1.01338 1.00265 1.21074 0.96274 0.95850 0.96979 1.21773 1.00823 0.95136 1.02015 1.21931 0.95803 0.89220 0.98295 1.62087 1.52154 1.01877 1.11061 1.21968 0.91833 0.97859 0.95473 1.22006 0.99275 0.96405 1.00274 1.21036 0.97784 0.96539 0.89697 1.58901 1.19790 1.24027 1.26959 1.22143 1.01108 0.88149 0.98662 1.21691 0.86724 0.96365 0.97647 1.18675 0.94018 0.90598 0.83568 1.00851 1.21409 1.11007 1.26747 0.96148 0.92993 1.25600 0.98708 0.95863 0.98255 1.70162 1.37668 1.34460 1.11819 0.85720 0.80307 0.78902 0.77622 1.20411 1.21299 1.19793 0.94742 0.92015 0.93485 0.91030 0.93498 0.92575 0.91040 0.93460 0.96591 0.90361 0.92885 0.93814 0.88843 0.90683 0.96950 0.96301 0.90659 0.93246 0.97501 0.91193 0.93427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 9.07 71.98 0.65 -3.39 16 2 C -0.08 -2.53 2.96 -10.79 -0.03 -2.56 16 3 C -0.14 -3.50 9.19 71.98 0.66 -2.84 16 4 C 0.08 2.95 4.12 86.31 0.36 3.31 16 5 N -0.55 -23.23 3.73 -878.71 -3.28 -26.51 16 6 C 0.06 1.99 4.98 85.35 0.42 2.42 16 7 C -0.14 -4.73 5.56 30.38 0.17 -4.56 16 8 C 0.08 2.76 4.96 88.05 0.44 3.19 16 9 N -0.57 -24.40 4.23 -938.58 -3.97 -28.37 16 10 C 0.05 1.75 9.45 127.69 1.21 2.96 16 11 C 0.10 5.01 4.46 85.43 0.38 5.39 16 12 C 0.24 12.10 1.24 43.28 0.05 12.16 16 13 H -0.03 -1.53 7.08 -2.38 -0.02 -1.55 16 14 C -0.51 -28.42 7.67 25.60 0.20 -28.22 16 15 H 0.05 2.91 7.80 -2.91 -0.02 2.89 16 16 C 0.02 0.84 5.02 84.65 0.43 1.27 16 17 N -0.90 -51.61 11.61 21.45 0.25 -51.36 16 18 Si 0.95 44.23 29.54 68.60 2.03 46.25 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 21 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 22 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.05 1.70 7.71 -2.39 -0.02 1.68 16 25 H 0.07 2.02 6.70 -2.39 -0.02 2.01 16 26 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.05 2.13 7.08 -2.39 -0.02 2.11 16 30 H 0.02 0.61 7.51 -2.39 -0.02 0.59 16 31 H 0.08 2.36 6.41 -2.39 -0.02 2.34 16 32 H 0.05 1.92 6.52 -2.38 -0.02 1.90 16 33 H 0.04 1.74 6.73 -2.39 -0.02 1.73 16 34 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.07 2.30 7.85 -2.38 -0.02 2.28 16 36 H 0.01 0.43 7.59 -2.39 -0.02 0.41 16 37 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.07 2.36 7.88 -2.38 -0.02 2.34 16 39 H 0.05 2.05 8.07 -2.39 -0.02 2.03 16 40 H 0.01 0.33 6.77 -2.39 -0.02 0.32 16 41 H 0.07 3.85 5.59 -2.39 -0.01 3.84 16 42 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -60.09 311.71 0.91 -59.18 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.95 Total: 11.68 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: 4.93 Total: -10.87 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -7.00 Total: -106.24 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -60.09 0.91 -59.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220420684.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.421 kcal (2) G-P(sol) polarization free energy of solvation -60.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds