Wall clock time and date at job start Mon Mar 30 2020 04:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46775 * 2 1 4 4 C 1.53006 * 109.46775 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.46888 * 184.97413 * 4 3 2 6 6 C 1.48066 * 111.00268 * 72.95646 * 5 4 3 7 7 H 1.09002 * 108.78811 * 312.99528 * 6 5 4 8 8 C 1.53003 * 108.78776 * 71.32675 * 6 5 4 9 9 C 1.50744 * 112.94124 * 192.21939 * 6 5 4 10 10 C 1.54514 * 108.94070 * 92.65212 * 9 6 5 11 11 N 1.40080 * 111.50966 * 283.98886 * 10 9 6 12 12 C 1.47790 * 114.51308 * 61.47413 * 11 10 9 13 13 C 1.47756 * 111.00006 * 305.35415 * 5 4 3 14 14 H 1.09000 * 108.98876 * 205.48535 * 13 5 4 15 15 C 1.50701 * 108.99198 * 324.31926 * 13 5 4 16 16 H 1.08001 * 120.00151 * 6.73832 * 15 13 5 17 17 C 1.37878 * 119.99589 * 186.74508 * 15 13 5 18 18 N 1.31513 * 120.00134 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 119.99727 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46998 * 179.97438 * 19 17 15 21 21 H 1.48503 * 109.47240 * 299.99666 * 19 17 15 22 22 H 1.48497 * 109.47557 * 59.99679 * 19 17 15 23 23 H 1.08994 * 109.47371 * 300.00290 * 1 2 3 24 24 H 1.08998 * 109.47141 * 60.00290 * 1 2 3 25 25 H 1.08999 * 109.46922 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46929 * 240.00176 * 2 1 3 27 27 H 1.08998 * 109.47141 * 119.99710 * 2 1 3 28 28 H 1.08994 * 109.47408 * 59.99733 * 3 2 1 29 29 H 1.08998 * 109.47050 * 299.99766 * 3 2 1 30 30 H 1.08998 * 109.46934 * 64.97561 * 4 3 2 31 31 H 1.08994 * 109.47129 * 304.97402 * 4 3 2 32 32 H 1.09004 * 109.47107 * 60.00081 * 8 6 5 33 33 H 1.09004 * 109.46956 * 180.02562 * 8 6 5 34 34 H 1.08997 * 109.47038 * 300.00339 * 8 6 5 35 35 H 1.08999 * 109.56128 * 212.49255 * 9 6 5 36 36 H 1.09007 * 109.56021 * 332.70760 * 9 6 5 37 37 H 1.08990 * 109.07224 * 44.51141 * 10 9 6 38 38 H 1.09000 * 109.07298 * 163.47153 * 10 9 6 39 39 H 1.00902 * 111.00575 * 294.75528 * 11 10 9 40 40 H 1.09008 * 109.72088 * 158.98534 * 12 11 10 41 41 H 1.09009 * 109.81324 * 38.25559 * 12 11 10 42 42 H 0.97004 * 120.00082 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0596 2.8223 0.1207 6 6 3.8539 3.3409 1.4923 7 1 2.8361 3.1092 1.8062 8 6 4.8320 2.6388 2.4364 9 6 4.0641 4.8301 1.5950 10 6 2.7071 5.5428 1.4003 11 7 2.3231 5.5571 0.0533 12 6 2.1302 4.2189 -0.5436 13 6 3.4840 3.6821 -0.9341 14 1 4.1582 4.5188 -1.1168 15 6 3.3460 2.8780 -2.2012 16 1 3.5489 1.8173 -2.1924 17 6 2.9607 3.4966 -3.3716 18 7 2.7132 4.7882 -3.3822 19 14 2.7903 2.5001 -4.9424 20 1 2.3666 3.3925 -6.0512 21 1 4.0964 1.8783 -5.2783 22 1 1.7720 1.4372 -4.7463 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.9337 1.0077 -0.9303 31 1 3.9330 0.8536 0.8429 32 1 5.8542 2.8390 2.1151 33 1 4.6896 3.0124 3.4505 34 1 4.6486 1.5646 2.4162 35 1 4.4672 5.0748 2.5778 36 1 4.7624 5.1542 0.8233 37 1 1.9455 5.0239 1.9822 38 1 2.7892 6.5691 1.7581 39 1 2.9603 6.1116 -0.4986 40 1 1.4968 4.2981 -1.4272 41 1 1.6661 3.5532 0.1841 42 1 2.8014 5.3056 -2.5664 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220422130.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:49 Heat of formation + Delta-G solvation = 6.384185 kcal Electronic energy + Delta-G solvation = -19447.631215 eV Core-core repulsion = 16848.519890 eV Total energy + Delta-G solvation = -2599.111325 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.60376 -35.63595 -34.15010 -33.50710 -31.31258 -28.35630 -27.61598 -26.21240 -24.87628 -22.27897 -21.92004 -21.32092 -20.09142 -18.49467 -16.77213 -16.15114 -15.15257 -14.87128 -14.33436 -14.05740 -13.82425 -13.47113 -13.21693 -12.61298 -12.49436 -12.16915 -12.02450 -11.88759 -11.54684 -11.34959 -11.17005 -10.98090 -10.85646 -10.73524 -10.45554 -10.35024 -10.26004 -10.11034 -10.09939 -9.76118 -9.57197 -8.53895 -8.33400 -7.68648 -6.98405 -6.31927 -4.07037 3.42878 3.44175 3.62483 4.49579 4.75990 5.07623 5.21158 5.36767 5.38089 5.42748 5.50904 5.61714 5.64122 5.78389 5.85544 5.93732 6.04288 6.12272 6.16049 6.17710 6.25033 6.29301 6.34066 6.36597 6.46869 6.54832 6.55059 6.60715 6.65385 6.82412 6.91763 7.05805 7.18974 7.41437 7.75978 7.98730 8.09185 8.27600 8.44118 8.58450 8.88660 9.61644 11.02650 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017294 B = 0.011508 C = 0.008589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.664036 B = 2432.557722 C = 3259.277916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.159 4.159 4 C 0.072 3.928 5 N -0.535 5.535 6 C 0.082 3.918 7 H 0.031 0.969 8 C -0.139 4.139 9 C -0.161 4.161 10 C 0.080 3.920 11 N -0.708 5.708 12 C 0.032 3.968 13 C 0.181 3.819 14 H 0.027 0.973 15 C -0.595 4.595 16 H 0.064 0.936 17 C 0.020 3.980 18 N -0.910 5.910 19 Si 1.064 2.936 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.288 1.288 23 H 0.047 0.953 24 H 0.056 0.944 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.044 0.956 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.340 0.660 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.521 -4.410 8.811 9.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.197 4.197 4 C -0.056 4.056 5 N -0.258 5.258 6 C -0.026 4.026 7 H 0.049 0.951 8 C -0.197 4.197 9 C -0.201 4.201 10 C -0.053 4.053 11 N -0.338 5.338 12 C -0.097 4.097 13 C 0.073 3.927 14 H 0.045 0.955 15 C -0.634 4.634 16 H 0.082 0.918 17 C -0.185 4.185 18 N -0.546 5.546 19 Si 0.893 3.107 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.215 1.215 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.117 0.883 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.160 0.840 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.062 -4.222 7.293 8.494 hybrid contribution 0.499 -0.381 1.762 1.870 sum -0.563 -4.603 9.055 10.173 Atomic orbital electron populations 1.21756 0.96638 1.00593 1.01687 1.21463 0.95258 0.98042 1.00935 1.22605 0.98453 0.95810 1.02849 1.22035 0.92209 0.90470 1.00893 1.62179 1.60001 1.02461 1.01208 1.21279 0.96762 0.93985 0.90616 0.95115 1.21906 1.00266 1.00060 0.97466 1.22499 1.00281 0.95742 1.01625 1.20974 0.93758 0.99116 0.91430 1.57947 1.54970 1.18295 1.02601 1.23073 1.00896 0.86737 0.98957 1.19823 0.90071 0.93323 0.89458 0.95491 1.22209 1.50556 0.96744 0.93911 0.91772 1.25702 0.93993 0.97063 1.01731 1.70793 1.45169 1.06485 1.32178 0.83592 0.76443 0.74902 0.75753 1.20899 1.21551 1.21498 0.93421 0.92534 0.93554 0.92191 0.93349 0.93788 0.88253 0.89881 0.93709 0.92428 0.93460 0.93204 0.92073 0.91241 0.92663 0.92297 0.83970 0.89504 0.92065 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 37.16 0.37 -1.77 16 2 C -0.12 -1.87 5.93 -26.73 -0.16 -2.02 16 3 C -0.16 -2.95 3.36 -26.73 -0.09 -3.03 16 4 C 0.07 1.40 4.65 -3.82 -0.02 1.38 16 5 N -0.53 -11.13 4.61 -221.16 -1.02 -12.15 16 6 C 0.08 1.46 1.77 -68.20 -0.12 1.34 16 7 H 0.03 0.58 4.93 -51.93 -0.26 0.32 16 8 C -0.14 -2.14 8.99 37.16 0.33 -1.80 16 9 C -0.16 -2.73 5.18 -27.07 -0.14 -2.87 16 10 C 0.08 1.37 6.03 -6.55 -0.04 1.33 16 11 N -0.71 -14.26 6.40 -118.19 -0.76 -15.02 16 12 C 0.03 0.72 3.64 -4.45 -0.02 0.70 16 13 C 0.18 4.26 1.42 -69.51 -0.10 4.16 16 14 H 0.03 0.73 6.36 -51.93 -0.33 0.40 16 15 C -0.60 -15.38 6.39 -34.44 -0.22 -15.60 16 16 H 0.06 1.66 5.05 -52.49 -0.26 1.39 16 17 C 0.02 0.54 5.03 -17.82 -0.09 0.45 16 18 N -0.91 -25.93 12.94 55.43 0.72 -25.21 16 19 Si 1.06 24.39 29.90 -169.99 -5.08 19.31 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.82 5.42 -51.93 -0.28 0.54 16 29 H 0.10 2.17 4.95 -51.93 -0.26 1.91 16 30 H 0.08 1.76 5.86 -51.93 -0.30 1.46 16 31 H 0.04 0.79 6.28 -51.93 -0.33 0.46 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.63 7.99 -51.93 -0.42 0.21 16 34 H 0.05 0.75 6.50 -51.93 -0.34 0.41 16 35 H 0.06 0.89 7.63 -51.93 -0.40 0.50 16 36 H 0.07 1.32 7.19 -51.92 -0.37 0.95 16 37 H 0.05 0.95 7.59 -51.93 -0.39 0.55 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.34 7.08 7.59 -39.29 -0.30 6.78 16 40 H 0.09 2.24 6.20 -51.92 -0.32 1.92 16 41 H 0.06 1.33 3.81 -51.92 -0.20 1.13 16 42 H 0.27 7.64 5.43 -40.82 -0.22 7.42 16 LS Contribution 293.26 15.07 4.42 4.42 Total: -1.00 -26.92 293.26 -8.74 -35.66 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -6.73 Total: 10.74 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -0.29 Total: -17.75 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -1.06 Total: -52.38 kcal Atomic # 14 Polarization: 24.39 SS G_CDS: -5.08 Total: 19.31 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -26.92 -8.74 -35.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220422130.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.049 kcal (2) G-P(sol) polarization free energy of solvation -26.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds