Wall clock time and date at job start Mon Mar 30 2020 04:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46775 * 2 1 4 4 C 1.53006 * 109.46775 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.46888 * 184.97413 * 4 3 2 6 6 C 1.48066 * 111.00268 * 72.95646 * 5 4 3 7 7 H 1.09002 * 108.78811 * 312.99528 * 6 5 4 8 8 C 1.53003 * 108.78776 * 71.32675 * 6 5 4 9 9 C 1.50744 * 112.94124 * 192.21939 * 6 5 4 10 10 C 1.54514 * 108.94070 * 92.65212 * 9 6 5 11 11 N 1.40080 * 111.50966 * 283.98886 * 10 9 6 12 12 C 1.47790 * 114.51308 * 61.47413 * 11 10 9 13 13 C 1.47756 * 111.00006 * 305.35415 * 5 4 3 14 14 H 1.09000 * 108.98876 * 205.48535 * 13 5 4 15 15 C 1.50701 * 108.99198 * 324.31926 * 13 5 4 16 16 H 1.08001 * 120.00151 * 6.73832 * 15 13 5 17 17 C 1.37878 * 119.99589 * 186.74508 * 15 13 5 18 18 N 1.31513 * 120.00134 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 119.99727 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46998 * 179.97438 * 19 17 15 21 21 H 1.48503 * 109.47240 * 299.99666 * 19 17 15 22 22 H 1.48497 * 109.47557 * 59.99679 * 19 17 15 23 23 H 1.08994 * 109.47371 * 300.00290 * 1 2 3 24 24 H 1.08998 * 109.47141 * 60.00290 * 1 2 3 25 25 H 1.08999 * 109.46922 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46929 * 240.00176 * 2 1 3 27 27 H 1.08998 * 109.47141 * 119.99710 * 2 1 3 28 28 H 1.08994 * 109.47408 * 59.99733 * 3 2 1 29 29 H 1.08998 * 109.47050 * 299.99766 * 3 2 1 30 30 H 1.08998 * 109.46934 * 64.97561 * 4 3 2 31 31 H 1.08994 * 109.47129 * 304.97402 * 4 3 2 32 32 H 1.09004 * 109.47107 * 60.00081 * 8 6 5 33 33 H 1.09004 * 109.46956 * 180.02562 * 8 6 5 34 34 H 1.08997 * 109.47038 * 300.00339 * 8 6 5 35 35 H 1.08999 * 109.56128 * 212.49255 * 9 6 5 36 36 H 1.09007 * 109.56021 * 332.70760 * 9 6 5 37 37 H 1.08990 * 109.07224 * 44.51141 * 10 9 6 38 38 H 1.09000 * 109.07298 * 163.47153 * 10 9 6 39 39 H 1.00902 * 111.00575 * 294.75528 * 11 10 9 40 40 H 1.09008 * 109.72088 * 158.98534 * 12 11 10 41 41 H 1.09009 * 109.81324 * 38.25559 * 12 11 10 42 42 H 0.97004 * 120.00082 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0596 2.8223 0.1207 6 6 3.8539 3.3409 1.4923 7 1 2.8361 3.1092 1.8062 8 6 4.8320 2.6388 2.4364 9 6 4.0641 4.8301 1.5950 10 6 2.7071 5.5428 1.4003 11 7 2.3231 5.5571 0.0533 12 6 2.1302 4.2189 -0.5436 13 6 3.4840 3.6821 -0.9341 14 1 4.1582 4.5188 -1.1168 15 6 3.3460 2.8780 -2.2012 16 1 3.5489 1.8173 -2.1924 17 6 2.9607 3.4966 -3.3716 18 7 2.7132 4.7882 -3.3822 19 14 2.7903 2.5001 -4.9424 20 1 2.3666 3.3925 -6.0512 21 1 4.0964 1.8783 -5.2783 22 1 1.7720 1.4372 -4.7463 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.9337 1.0077 -0.9303 31 1 3.9330 0.8536 0.8429 32 1 5.8542 2.8390 2.1151 33 1 4.6896 3.0124 3.4505 34 1 4.6486 1.5646 2.4162 35 1 4.4672 5.0748 2.5778 36 1 4.7624 5.1542 0.8233 37 1 1.9455 5.0239 1.9822 38 1 2.7892 6.5691 1.7581 39 1 2.9603 6.1116 -0.4986 40 1 1.4968 4.2981 -1.4272 41 1 1.6661 3.5532 0.1841 42 1 2.8014 5.3056 -2.5664 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220422130.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:49 Heat of formation + Delta-G solvation = -11.886194 kcal Electronic energy + Delta-G solvation = -19448.423478 eV Core-core repulsion = 16848.519890 eV Total energy + Delta-G solvation = -2599.903588 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.22877 -37.14193 -35.88402 -34.99052 -33.01640 -29.90875 -29.05845 -27.86045 -26.66483 -23.72092 -23.60113 -22.83285 -21.58807 -20.13438 -18.68198 -17.78140 -16.72924 -16.31519 -15.89393 -15.70415 -15.46973 -14.99214 -14.66811 -14.10544 -14.01712 -13.68832 -13.61533 -13.43274 -12.97644 -12.78319 -12.70389 -12.55888 -12.36864 -12.29413 -12.06927 -11.94162 -11.87866 -11.70587 -11.54898 -11.31364 -11.16083 -10.46406 -10.34965 -9.32193 -8.67425 -8.42588 -6.19098 1.54700 1.61057 1.79201 2.60263 3.17687 3.29136 3.51129 3.78257 4.04363 4.06657 4.13164 4.26632 4.34286 4.38430 4.47487 4.52646 4.59020 4.72547 4.77745 4.80802 4.86585 4.94116 4.95373 4.99321 5.02888 5.08780 5.13831 5.18023 5.25739 5.30947 5.38325 5.46431 5.53158 5.68942 5.93014 6.19815 6.31350 6.53152 6.61081 6.74018 6.90628 7.56857 8.91261 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017294 B = 0.011508 C = 0.008589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.664036 B = 2432.557722 C = 3259.277916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.147 4.147 4 C 0.074 3.926 5 N -0.549 5.549 6 C 0.078 3.922 7 H 0.028 0.972 8 C -0.132 4.132 9 C -0.155 4.155 10 C 0.076 3.924 11 N -0.711 5.711 12 C 0.054 3.946 13 C 0.194 3.806 14 H -0.009 1.009 15 C -0.595 4.595 16 H 0.063 0.937 17 C -0.027 4.027 18 N -0.940 5.940 19 Si 1.104 2.896 20 H -0.290 1.290 21 H -0.277 1.277 22 H -0.272 1.272 23 H 0.052 0.948 24 H 0.039 0.961 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.044 0.956 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.334 0.666 40 H 0.047 0.953 41 H 0.068 0.932 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.522 -5.726 10.802 12.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.186 4.186 4 C -0.053 4.053 5 N -0.273 5.273 6 C -0.030 4.030 7 H 0.046 0.954 8 C -0.189 4.189 9 C -0.195 4.195 10 C -0.056 4.056 11 N -0.340 5.340 12 C -0.076 4.076 13 C 0.085 3.915 14 H 0.009 0.991 15 C -0.634 4.634 16 H 0.080 0.920 17 C -0.227 4.227 18 N -0.578 5.578 19 Si 0.929 3.071 20 H -0.216 1.216 21 H -0.203 1.203 22 H -0.198 1.198 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.153 0.847 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.056 -5.554 9.319 10.899 hybrid contribution 0.531 0.035 1.226 1.336 sum -0.525 -5.518 10.545 11.913 Atomic orbital electron populations 1.21734 0.95546 1.01989 1.01185 1.21438 0.96230 0.95907 1.01772 1.22392 0.97727 0.97557 1.00931 1.22002 0.92782 0.89816 1.00729 1.62106 1.60125 1.02773 1.02255 1.21441 0.97482 0.94904 0.89185 0.95439 1.21852 0.98913 1.00098 0.98067 1.22445 0.99468 0.95035 1.02539 1.21114 0.94082 1.00888 0.89487 1.57912 1.55262 1.16829 1.04013 1.22643 0.99352 0.87959 0.97602 1.19506 0.89780 0.92269 0.89948 0.99148 1.22515 1.49052 0.96870 0.94970 0.91951 1.26860 0.93759 0.97264 1.04771 1.70864 1.47446 1.07466 1.32043 0.83064 0.77274 0.74130 0.72679 1.21633 1.20305 1.19787 0.92848 0.94156 0.91212 0.92615 0.91182 0.93752 0.91946 0.92153 0.91216 0.93000 0.90613 0.92783 0.88779 0.93753 0.92034 0.89784 0.84721 0.93490 0.91417 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 9.91 71.98 0.71 -3.22 16 2 C -0.12 -3.40 5.93 30.60 0.18 -3.22 16 3 C -0.15 -5.36 3.36 30.60 0.10 -5.26 16 4 C 0.07 2.83 4.65 86.31 0.40 3.23 16 5 N -0.55 -22.68 4.61 -853.61 -3.94 -26.61 16 6 C 0.08 2.63 1.77 43.96 0.08 2.71 16 7 H 0.03 0.97 4.93 -2.39 -0.01 0.96 16 8 C -0.13 -3.61 8.99 71.98 0.65 -2.96 16 9 C -0.15 -4.96 5.18 30.38 0.16 -4.81 16 10 C 0.08 2.48 6.03 88.05 0.53 3.01 16 11 N -0.71 -28.93 6.40 -527.84 -3.38 -32.30 16 12 C 0.05 2.48 3.64 85.41 0.31 2.79 16 13 C 0.19 9.36 1.42 43.28 0.06 9.42 16 14 H -0.01 -0.50 6.36 -2.39 -0.02 -0.52 16 15 C -0.60 -31.63 6.39 25.60 0.16 -31.47 16 16 H 0.06 3.29 5.05 -2.91 -0.01 3.27 16 17 C -0.03 -1.50 5.03 84.66 0.43 -1.08 16 18 N -0.94 -55.61 12.94 21.45 0.28 -55.33 16 19 Si 1.10 49.98 29.90 68.60 2.05 52.03 16 20 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 21 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 23 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.04 1.60 5.42 -2.39 -0.01 1.58 16 29 H 0.06 2.76 4.95 -2.39 -0.01 2.75 16 30 H 0.06 2.56 5.86 -2.39 -0.01 2.54 16 31 H 0.07 2.30 6.28 -2.39 -0.02 2.28 16 32 H 0.05 1.48 8.14 -2.38 -0.02 1.47 16 33 H 0.08 1.66 7.99 -2.38 -0.02 1.65 16 34 H 0.05 1.43 6.50 -2.39 -0.02 1.41 16 35 H 0.09 2.41 7.63 -2.39 -0.02 2.39 16 36 H 0.04 1.66 7.19 -2.38 -0.02 1.65 16 37 H 0.06 1.96 7.59 -2.39 -0.02 1.94 16 38 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.33 14.35 7.59 -89.69 -0.68 13.67 16 40 H 0.05 2.53 6.20 -2.38 -0.01 2.52 16 41 H 0.07 2.97 3.81 -2.38 -0.01 2.96 16 42 H 0.27 15.64 5.43 -92.71 -0.50 15.13 16 Total: -1.00 -59.73 293.26 -0.62 -60.35 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: 0.59 Total: 32.72 kcal Atomic # 6 Polarization: -34.63 SS G_CDS: 3.77 Total: -30.86 kcal Atomic # 7 Polarization: -107.21 SS G_CDS: -7.04 Total: -114.25 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 2.05 Total: 52.03 kcal Total: -59.73 -0.62 -60.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220422130.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.463 kcal (2) G-P(sol) polarization free energy of solvation -59.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds