Wall clock time and date at job start Mon Mar 30 2020 05:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47240 * 2 1 4 4 H 1.09000 * 109.47101 * 56.91907 * 3 2 1 5 5 C 1.50697 * 109.47184 * 176.91654 * 3 2 1 6 6 H 1.08002 * 119.99703 * 119.99859 * 5 3 2 7 7 C 1.37872 * 120.00309 * 300.00254 * 5 3 2 8 8 N 1.31524 * 119.99941 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00317 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47089 * 59.99730 * 9 7 5 11 11 H 1.48502 * 109.47260 * 179.97438 * 9 7 5 12 12 H 1.48510 * 109.46871 * 299.99704 * 9 7 5 13 13 N 1.46892 * 109.46840 * 296.92161 * 3 2 1 14 14 C 1.46852 * 110.99772 * 170.99874 * 13 3 2 15 15 C 1.53042 * 109.52117 * 185.83652 * 14 13 3 16 16 C 1.53122 * 109.27983 * 300.81951 * 15 14 13 17 17 C 1.53118 * 109.15966 * 57.65291 * 16 15 14 18 18 H 1.08997 * 109.50032 * 62.28769 * 17 16 15 19 19 C 1.53001 * 109.50027 * 182.36710 * 17 16 15 20 20 C 1.52997 * 109.47182 * 294.99852 * 19 17 16 21 21 N 1.46898 * 109.47049 * 180.02562 * 20 19 17 22 22 C 1.46849 * 111.00143 * 295.20440 * 13 3 2 23 23 H 1.08996 * 109.47400 * 65.05955 * 1 2 3 24 24 H 1.09006 * 109.47162 * 185.06143 * 1 2 3 25 25 H 1.09003 * 109.47067 * 305.06099 * 1 2 3 26 26 H 1.08999 * 109.46997 * 239.99410 * 2 1 3 27 27 H 1.09008 * 109.47002 * 120.00206 * 2 1 3 28 28 H 0.97003 * 120.00110 * 180.02562 * 8 7 5 29 29 H 1.08993 * 109.46202 * 65.82235 * 14 13 3 30 30 H 1.08994 * 109.46246 * 305.85187 * 14 13 3 31 31 H 1.08998 * 109.50617 * 60.75985 * 15 14 13 32 32 H 1.09005 * 109.50144 * 180.84288 * 15 14 13 33 33 H 1.08992 * 109.52437 * 177.56517 * 16 15 14 34 34 H 1.09005 * 109.52087 * 297.68587 * 16 15 14 35 35 H 1.08993 * 109.47413 * 55.00344 * 19 17 16 36 36 H 1.09001 * 109.46785 * 175.00270 * 19 17 16 37 37 H 1.08993 * 109.47348 * 300.00532 * 20 19 17 38 38 H 1.09001 * 109.46919 * 60.00500 * 20 19 17 39 39 H 1.00901 * 110.99918 * 56.05402 * 21 20 19 40 40 H 1.00903 * 110.99721 * 180.02562 * 21 20 19 41 41 H 1.09003 * 109.46205 * 54.14437 * 22 13 3 42 42 H 1.09007 * 109.45586 * 294.17825 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6323 1.9720 0.8611 5 6 3.5451 1.4432 0.0764 6 1 4.1256 1.8965 -0.7135 7 6 4.1809 0.8651 1.1546 8 7 3.4738 0.3134 2.1167 9 14 6.0464 0.8665 1.2497 10 1 6.5410 2.2668 1.2500 11 1 6.4790 0.1890 2.4983 12 1 6.6024 0.1455 0.0764 13 7 1.6120 2.1131 -1.2348 14 6 1.8966 3.5526 -1.1777 15 6 1.3089 4.2396 -2.4126 16 6 1.9263 3.6279 -3.6732 17 6 1.6573 2.1206 -3.6840 18 1 0.5825 1.9430 -3.7211 19 6 2.3216 1.4920 -4.9106 20 6 1.6598 2.0300 -6.1809 21 7 2.2972 1.4260 -7.3585 22 6 2.2349 1.4951 -2.4124 23 1 -0.3634 0.4333 -0.9318 24 1 -0.3634 -1.0237 0.0907 25 1 -0.3633 0.5904 0.8412 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.9212 -0.0930 2.8754 29 1 2.9750 3.7089 -1.1539 30 1 1.4485 3.9760 -0.2788 31 1 0.2286 4.0953 -2.4297 32 1 1.5333 5.3057 -2.3773 33 1 1.4789 4.0842 -4.5562 34 1 3.0015 3.8070 -3.6760 35 1 3.3820 1.7439 -4.9187 36 1 2.2058 0.4089 -4.8714 37 1 0.5994 1.7780 -6.1728 38 1 1.7756 3.1131 -6.2201 39 1 2.2595 0.4187 -7.3133 40 1 1.8777 1.7659 -8.2109 41 1 2.0325 0.4240 -2.4102 42 1 3.3118 1.6612 -2.3827 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226328333.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:24 Heat of formation + Delta-G solvation = -23.607853 kcal Electronic energy + Delta-G solvation = -18537.983284 eV Core-core repulsion = 15937.571407 eV Total energy + Delta-G solvation = -2600.411877 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.77064 -35.96985 -34.22097 -31.95633 -31.43973 -30.25358 -27.06414 -26.38176 -23.94082 -22.52287 -22.32776 -20.58230 -19.33152 -18.85323 -16.29913 -15.88737 -15.54136 -14.69825 -14.35009 -14.09180 -14.06920 -13.44343 -13.19976 -13.05005 -12.64003 -12.40291 -11.83344 -11.75216 -11.41545 -11.22809 -11.02947 -10.96879 -10.82865 -10.60014 -10.43209 -10.31096 -9.97983 -9.89799 -9.65240 -9.56236 -9.17104 -9.00469 -8.77023 -8.33057 -7.03768 -5.95409 -4.08776 3.29535 3.34596 3.37534 4.41854 4.48416 4.98713 5.07870 5.26007 5.29441 5.39378 5.48760 5.52391 5.70170 5.89421 6.03933 6.10632 6.13545 6.28539 6.34304 6.37036 6.37975 6.46096 6.50659 6.59068 6.66831 6.70299 6.81856 6.87293 7.01730 7.06834 7.14852 7.23109 7.33377 7.40828 7.65363 7.80250 8.04136 8.21500 8.39401 8.53808 9.01891 9.58631 11.03432 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021941 B = 0.007050 C = 0.006555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.855619 B = 3970.624636 C = 4270.671486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 C 0.214 3.786 4 H 0.037 0.963 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.534 5.534 14 C 0.063 3.937 15 C -0.116 4.116 16 C -0.111 4.111 17 C -0.084 4.084 18 H 0.068 0.932 19 C -0.111 4.111 20 C 0.061 3.939 21 N -0.854 5.854 22 C 0.070 3.930 23 H 0.045 0.955 24 H 0.024 0.976 25 H 0.039 0.961 26 H 0.032 0.968 27 H 0.091 0.909 28 H 0.261 0.739 29 H 0.033 0.967 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.023 0.977 38 H 0.072 0.928 39 H 0.339 0.661 40 H 0.337 0.663 41 H 0.067 0.933 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.757 3.025 -12.005 13.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.149 4.149 3 C 0.108 3.892 4 H 0.055 0.945 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.714 3.286 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.258 5.258 14 C -0.065 4.065 15 C -0.154 4.154 16 C -0.148 4.148 17 C -0.104 4.104 18 H 0.087 0.913 19 C -0.150 4.150 20 C -0.069 4.069 21 N -0.383 5.383 22 C -0.058 4.058 23 H 0.064 0.936 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.109 0.891 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.042 0.958 38 H 0.090 0.910 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.085 0.915 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.588 3.235 -11.581 12.870 hybrid contribution 1.061 -0.348 0.044 1.118 sum -3.526 2.887 -11.537 12.405 Atomic orbital electron populations 1.21689 0.98899 0.98234 1.00514 1.21598 0.92153 0.99262 1.01880 1.19260 0.92670 0.90996 0.86282 0.94536 1.21720 0.92831 1.37440 1.06080 0.92657 1.24902 0.97801 0.95098 0.95589 1.69870 1.34962 1.37907 1.09748 0.86766 0.86379 0.78175 0.77329 1.20422 1.21254 1.20346 1.62365 1.57849 1.01541 1.04036 1.21829 0.98389 0.90026 0.96304 1.21611 1.00448 0.98104 0.95220 1.21616 1.00419 0.95551 0.97249 1.21211 1.00112 0.94721 0.94310 0.91328 1.21570 1.00575 0.99926 0.92917 1.21875 0.95127 0.99629 0.90307 1.58739 1.63002 1.11993 1.04591 1.21883 0.96750 0.98332 0.88853 0.93567 0.95727 0.94231 0.94915 0.89085 0.92899 0.94867 0.92127 0.92031 0.92824 0.92972 0.92558 0.91391 0.92300 0.95832 0.90996 0.84901 0.85165 0.91486 0.94564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.72 37.16 0.36 -2.42 16 2 C -0.11 -2.63 5.09 -26.73 -0.14 -2.76 16 3 C 0.21 5.27 1.73 -68.87 -0.12 5.15 16 4 H 0.04 1.00 8.01 -51.93 -0.42 0.59 16 5 C -0.54 -14.49 7.22 -34.44 -0.25 -14.74 16 6 H 0.06 1.50 5.84 -52.49 -0.31 1.19 16 7 C 0.07 1.87 5.30 -17.82 -0.09 1.77 16 8 N -0.89 -24.97 11.30 55.43 0.63 -24.35 16 9 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.53 -11.21 4.08 -228.08 -0.93 -12.14 16 14 C 0.06 1.23 5.18 -3.83 -0.02 1.21 16 15 C -0.12 -1.81 6.09 -26.65 -0.16 -1.97 16 16 C -0.11 -1.63 4.98 -26.61 -0.13 -1.76 16 17 C -0.08 -1.30 2.35 -90.54 -0.21 -1.51 16 18 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 19 C -0.11 -1.52 4.95 -26.73 -0.13 -1.65 16 20 C 0.06 0.70 6.54 -3.83 -0.03 0.68 16 21 N -0.85 -8.89 9.62 -10.37 -0.10 -8.99 16 22 C 0.07 1.37 4.07 -3.84 -0.02 1.35 16 23 H 0.05 0.90 7.84 -51.93 -0.41 0.50 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.03 0.77 6.26 -51.93 -0.33 0.44 16 27 H 0.09 2.42 6.00 -51.92 -0.31 2.11 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.03 0.71 7.22 -51.93 -0.38 0.33 16 30 H 0.06 1.20 8.03 -51.93 -0.42 0.78 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.66 6.69 -51.93 -0.35 0.32 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.07 0.84 6.62 -51.93 -0.34 0.49 16 39 H 0.34 3.19 8.99 -39.29 -0.35 2.83 16 40 H 0.34 2.81 9.08 -39.29 -0.36 2.45 16 41 H 0.07 1.36 6.11 -51.93 -0.32 1.04 16 42 H 0.04 0.78 6.42 -51.93 -0.33 0.45 16 LS Contribution 313.78 15.07 4.73 4.73 Total: -1.00 -27.52 313.78 -9.18 -36.70 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.55 Total: 4.43 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -0.94 Total: -16.65 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: -0.40 Total: -45.48 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.52 -9.18 -36.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226328333.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.095 kcal (2) G-P(sol) polarization free energy of solvation -27.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds