Wall clock time and date at job start Mon Mar 30 2020 05:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47240 * 2 1 4 4 H 1.09000 * 109.47101 * 56.91907 * 3 2 1 5 5 C 1.50697 * 109.47184 * 176.91654 * 3 2 1 6 6 H 1.08002 * 119.99703 * 119.99859 * 5 3 2 7 7 C 1.37872 * 120.00309 * 300.00254 * 5 3 2 8 8 N 1.31524 * 119.99941 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00317 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47089 * 59.99730 * 9 7 5 11 11 H 1.48502 * 109.47260 * 179.97438 * 9 7 5 12 12 H 1.48510 * 109.46871 * 299.99704 * 9 7 5 13 13 N 1.46892 * 109.46840 * 296.92161 * 3 2 1 14 14 C 1.46852 * 110.99772 * 170.99874 * 13 3 2 15 15 C 1.53042 * 109.52117 * 185.83652 * 14 13 3 16 16 C 1.53122 * 109.27983 * 300.81951 * 15 14 13 17 17 C 1.53118 * 109.15966 * 57.65291 * 16 15 14 18 18 H 1.08997 * 109.50032 * 62.28769 * 17 16 15 19 19 C 1.53001 * 109.50027 * 182.36710 * 17 16 15 20 20 C 1.52997 * 109.47182 * 294.99852 * 19 17 16 21 21 N 1.46898 * 109.47049 * 180.02562 * 20 19 17 22 22 C 1.46849 * 111.00143 * 295.20440 * 13 3 2 23 23 H 1.08996 * 109.47400 * 65.05955 * 1 2 3 24 24 H 1.09006 * 109.47162 * 185.06143 * 1 2 3 25 25 H 1.09003 * 109.47067 * 305.06099 * 1 2 3 26 26 H 1.08999 * 109.46997 * 239.99410 * 2 1 3 27 27 H 1.09008 * 109.47002 * 120.00206 * 2 1 3 28 28 H 0.97003 * 120.00110 * 180.02562 * 8 7 5 29 29 H 1.08993 * 109.46202 * 65.82235 * 14 13 3 30 30 H 1.08994 * 109.46246 * 305.85187 * 14 13 3 31 31 H 1.08998 * 109.50617 * 60.75985 * 15 14 13 32 32 H 1.09005 * 109.50144 * 180.84288 * 15 14 13 33 33 H 1.08992 * 109.52437 * 177.56517 * 16 15 14 34 34 H 1.09005 * 109.52087 * 297.68587 * 16 15 14 35 35 H 1.08993 * 109.47413 * 55.00344 * 19 17 16 36 36 H 1.09001 * 109.46785 * 175.00270 * 19 17 16 37 37 H 1.08993 * 109.47348 * 300.00532 * 20 19 17 38 38 H 1.09001 * 109.46919 * 60.00500 * 20 19 17 39 39 H 1.00901 * 110.99918 * 56.05402 * 21 20 19 40 40 H 1.00903 * 110.99721 * 180.02562 * 21 20 19 41 41 H 1.09003 * 109.46205 * 54.14437 * 22 13 3 42 42 H 1.09007 * 109.45586 * 294.17825 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6323 1.9720 0.8611 5 6 3.5451 1.4432 0.0764 6 1 4.1256 1.8965 -0.7135 7 6 4.1809 0.8651 1.1546 8 7 3.4738 0.3134 2.1167 9 14 6.0464 0.8665 1.2497 10 1 6.5410 2.2668 1.2500 11 1 6.4790 0.1890 2.4983 12 1 6.6024 0.1455 0.0764 13 7 1.6120 2.1131 -1.2348 14 6 1.8966 3.5526 -1.1777 15 6 1.3089 4.2396 -2.4126 16 6 1.9263 3.6279 -3.6732 17 6 1.6573 2.1206 -3.6840 18 1 0.5825 1.9430 -3.7211 19 6 2.3216 1.4920 -4.9106 20 6 1.6598 2.0300 -6.1809 21 7 2.2972 1.4260 -7.3585 22 6 2.2349 1.4951 -2.4124 23 1 -0.3634 0.4333 -0.9318 24 1 -0.3634 -1.0237 0.0907 25 1 -0.3633 0.5904 0.8412 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.9212 -0.0930 2.8754 29 1 2.9750 3.7089 -1.1539 30 1 1.4485 3.9760 -0.2788 31 1 0.2286 4.0953 -2.4297 32 1 1.5333 5.3057 -2.3773 33 1 1.4789 4.0842 -4.5562 34 1 3.0015 3.8070 -3.6760 35 1 3.3820 1.7439 -4.9187 36 1 2.2058 0.4089 -4.8714 37 1 0.5994 1.7780 -6.1728 38 1 1.7756 3.1131 -6.2201 39 1 2.2595 0.4187 -7.3133 40 1 1.8777 1.7659 -8.2109 41 1 2.0325 0.4240 -2.4102 42 1 3.3118 1.6612 -2.3827 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226328333.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:24 Heat of formation + Delta-G solvation = -41.590671 kcal Electronic energy + Delta-G solvation = -18538.763077 eV Core-core repulsion = 15937.571407 eV Total energy + Delta-G solvation = -2601.191670 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.28902 -37.35104 -35.63156 -33.83073 -32.84159 -31.82555 -28.62041 -27.97793 -25.66153 -24.14545 -23.60101 -21.92225 -20.88802 -20.55182 -18.26884 -17.21351 -16.78483 -16.36193 -15.64790 -15.62166 -15.22224 -14.95409 -14.90417 -14.53055 -14.32808 -13.77947 -13.43437 -13.15561 -13.03793 -12.90502 -12.79390 -12.61106 -12.32239 -12.23316 -11.99323 -11.81787 -11.55053 -11.51968 -11.40575 -11.14880 -10.93360 -10.68028 -10.42741 -9.56414 -8.88325 -8.02867 -6.25917 1.35528 1.36236 1.43640 2.38608 3.14169 3.35676 3.76293 3.88824 4.07370 4.13004 4.32280 4.37537 4.56708 4.58969 4.65706 4.73332 4.76595 4.79773 4.81519 4.91619 5.01392 5.07758 5.10806 5.13655 5.18869 5.25574 5.30764 5.39555 5.41936 5.48838 5.51872 5.61764 5.67833 5.80351 6.08238 6.22928 6.28046 6.41671 6.64973 6.74026 6.96507 7.44767 8.91131 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021941 B = 0.007050 C = 0.006555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.855619 B = 3970.624636 C = 4270.671486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.105 4.105 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.551 4.551 6 H 0.046 0.954 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.943 3.057 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.275 1.275 13 N -0.529 5.529 14 C 0.061 3.939 15 C -0.106 4.106 16 C -0.107 4.107 17 C -0.074 4.074 18 H 0.076 0.924 19 C -0.105 4.105 20 C 0.069 3.931 21 N -0.863 5.863 22 C 0.075 3.925 23 H 0.056 0.944 24 H 0.044 0.956 25 H 0.032 0.968 26 H 0.030 0.970 27 H 0.061 0.939 28 H 0.261 0.739 29 H 0.008 0.992 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.034 0.966 38 H 0.075 0.925 39 H 0.344 0.656 40 H 0.350 0.650 41 H 0.054 0.946 42 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.415 3.598 -14.043 15.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.143 4.143 3 C 0.112 3.888 4 H 0.019 0.981 5 C -0.590 4.590 6 H 0.064 0.936 7 C -0.177 4.177 8 N -0.549 5.549 9 Si 0.769 3.231 10 H -0.202 1.202 11 H -0.206 1.206 12 H -0.200 1.200 13 N -0.252 5.252 14 C -0.068 4.068 15 C -0.144 4.144 16 C -0.145 4.145 17 C -0.093 4.093 18 H 0.095 0.905 19 C -0.144 4.144 20 C -0.062 4.062 21 N -0.394 5.394 22 C -0.053 4.053 23 H 0.076 0.924 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.026 0.974 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.157 0.843 40 H 0.164 0.836 41 H 0.073 0.927 42 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -5.251 3.816 -13.642 15.107 hybrid contribution 1.274 -0.523 0.687 1.539 sum -3.977 3.292 -12.954 13.945 Atomic orbital electron populations 1.21541 0.96129 0.99579 1.00793 1.21432 0.94580 0.98145 1.00182 1.19046 0.91426 0.91497 0.86879 0.98064 1.21941 0.94161 1.37090 1.05796 0.93630 1.25585 1.01757 0.94983 0.95423 1.69994 1.36362 1.38479 1.10113 0.85856 0.81681 0.78138 0.77433 1.20198 1.20618 1.20030 1.62350 1.57447 1.02303 1.03129 1.21913 0.97095 0.89387 0.98400 1.21558 1.00671 0.98906 0.93267 1.21612 1.00000 0.94820 0.98031 1.21110 1.00250 0.95271 0.92670 0.90538 1.21475 0.99683 0.99802 0.93392 1.21742 0.95369 0.99694 0.89406 1.58690 1.63239 1.12547 1.04894 1.21878 0.95213 0.97999 0.90223 0.92448 0.93662 0.94833 0.95169 0.92085 0.92921 0.97391 0.93112 0.91026 0.90603 0.89740 0.93615 0.92910 0.92483 0.94780 0.90627 0.84291 0.83634 0.92712 0.97422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.97 9.72 71.98 0.70 -4.27 16 2 C -0.10 -5.09 5.09 30.59 0.16 -4.93 16 3 C 0.22 11.13 1.73 44.17 0.08 11.21 16 4 H 0.00 0.08 8.01 -2.39 -0.02 0.06 16 5 C -0.55 -30.46 7.22 25.60 0.18 -30.27 16 6 H 0.05 2.56 5.84 -2.91 -0.02 2.54 16 7 C 0.02 1.25 5.30 84.65 0.45 1.70 16 8 N -0.91 -52.64 11.30 21.45 0.24 -52.40 16 9 Si 0.94 44.41 29.54 68.60 2.03 46.44 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 13 N -0.53 -22.45 4.08 -875.52 -3.57 -26.02 16 14 C 0.06 2.38 5.18 86.33 0.45 2.83 16 15 C -0.11 -3.08 6.09 30.65 0.19 -2.89 16 16 C -0.11 -2.88 4.98 30.67 0.15 -2.72 16 17 C -0.07 -2.15 2.35 -10.74 -0.03 -2.17 16 18 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 19 C -0.10 -2.68 4.95 30.59 0.15 -2.53 16 20 C 0.07 1.37 6.54 86.30 0.56 1.93 16 21 N -0.86 -15.65 9.62 -186.73 -1.80 -17.45 16 22 C 0.08 2.94 4.07 86.32 0.35 3.29 16 23 H 0.06 2.17 7.84 -2.39 -0.02 2.15 16 24 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 25 H 0.03 1.36 8.14 -2.39 -0.02 1.35 16 26 H 0.03 1.44 6.26 -2.39 -0.01 1.42 16 27 H 0.06 3.34 6.00 -2.38 -0.01 3.32 16 28 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 29 H 0.01 0.34 7.22 -2.39 -0.02 0.33 16 30 H 0.05 2.05 8.03 -2.39 -0.02 2.03 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.08 1.79 6.69 -2.39 -0.02 1.78 16 34 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.08 1.47 6.62 -2.39 -0.02 1.46 16 39 H 0.34 5.66 8.99 -89.69 -0.81 4.85 16 40 H 0.35 4.81 9.08 -89.69 -0.81 3.99 16 41 H 0.05 2.25 6.11 -2.39 -0.01 2.23 16 42 H 0.01 0.34 6.42 -2.38 -0.02 0.32 16 Total: -1.00 -60.33 313.78 -0.33 -60.66 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -0.63 Total: 17.60 kcal Atomic # 6 Polarization: -32.22 SS G_CDS: 3.39 Total: -28.82 kcal Atomic # 7 Polarization: -90.75 SS G_CDS: -5.12 Total: -95.87 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -60.33 -0.33 -60.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226328333.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.066 kcal (2) G-P(sol) polarization free energy of solvation -60.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds