Wall clock time and date at job start Mon Mar 30 2020 05:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47216 * 2 1 4 4 H 1.08998 * 109.52279 * 305.13151 * 3 2 1 5 5 C 1.53122 * 109.57133 * 65.29648 * 3 2 1 6 6 C 1.53041 * 109.27641 * 177.59965 * 5 3 2 7 7 N 1.46846 * 109.51282 * 300.80582 * 6 5 3 8 8 C 1.46900 * 110.99892 * 185.84314 * 7 6 5 9 9 C 1.52997 * 109.47287 * 294.76957 * 8 7 6 10 10 C 1.50699 * 109.47406 * 185.85061 * 9 8 7 11 11 H 1.08001 * 120.00202 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00350 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99766 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00383 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46563 * 60.00030 * 14 12 10 16 16 H 1.48495 * 109.47497 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47074 * 300.00531 * 14 12 10 18 18 C 1.46843 * 111.19967 * 61.74818 * 7 6 5 19 19 H 1.09001 * 109.46488 * 58.26298 * 18 7 6 20 20 C 1.53009 * 109.46445 * 178.23819 * 18 7 6 21 21 N 1.46896 * 109.47199 * 291.80422 * 20 18 7 22 22 C 1.53035 * 109.52599 * 298.25667 * 18 7 6 23 23 H 1.08998 * 109.46457 * 299.99687 * 1 2 3 24 24 H 1.08992 * 109.47018 * 59.99965 * 1 2 3 25 25 H 1.08994 * 109.46975 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46766 * 239.99865 * 2 1 3 27 27 H 1.09001 * 109.47129 * 120.00119 * 2 1 3 28 28 H 1.09001 * 109.51362 * 57.65766 * 5 3 2 29 29 H 1.08994 * 109.49781 * 297.53729 * 5 3 2 30 30 H 1.08997 * 109.46370 * 180.79951 * 6 5 3 31 31 H 1.08993 * 109.46442 * 60.81482 * 6 5 3 32 32 H 1.08997 * 109.47182 * 54.76786 * 8 7 6 33 33 H 1.09004 * 109.47331 * 174.76855 * 8 7 6 34 34 H 1.09004 * 109.47370 * 305.85239 * 9 8 7 35 35 H 1.09004 * 109.47089 * 65.85049 * 9 8 7 36 36 H 0.96998 * 119.99674 * 179.97438 * 13 12 10 37 37 H 1.08998 * 109.46861 * 51.80502 * 20 18 7 38 38 H 1.09003 * 109.46839 * 171.80386 * 20 18 7 39 39 H 1.00902 * 111.00125 * 170.63948 * 21 20 18 40 40 H 1.00905 * 111.00156 * 294.59620 * 21 20 18 41 41 H 1.09004 * 109.50664 * 179.12079 * 22 18 7 42 42 H 1.09003 * 109.50347 * 299.19964 * 22 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6042 1.9830 -0.8402 5 6 1.6426 2.1271 1.3107 6 6 2.2071 3.5494 1.3292 7 7 3.6696 3.4983 1.2069 8 6 4.2577 4.8358 1.3599 9 6 3.8087 5.7261 0.1994 10 6 4.5235 7.0505 0.2767 11 1 5.2273 7.2387 1.0740 12 6 4.2790 8.0222 -0.6705 13 7 3.4215 7.7933 -1.6411 14 14 5.1644 9.6642 -0.5743 15 1 6.6302 9.4417 -0.6587 16 1 4.7297 10.5279 -1.7014 17 1 4.8378 10.3280 0.7132 18 6 4.0750 2.8876 -0.0655 19 1 3.6515 3.4570 -0.8929 20 6 5.6015 2.8943 -0.1707 21 7 6.0765 4.2772 -0.3117 22 6 3.5661 1.4456 -0.1258 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.0464 1.5644 2.1524 29 1 0.5559 2.1658 1.3859 30 1 1.9379 4.0348 2.2673 31 1 1.7925 4.1156 0.4953 32 1 3.9267 5.2726 2.3020 33 1 5.3449 4.7571 1.3579 34 1 4.0476 5.2389 -0.7459 35 1 2.7328 5.8896 0.2621 36 1 3.2493 8.4770 -2.3073 37 1 6.0296 2.4530 0.7293 38 1 5.9082 2.3143 -1.0411 39 1 7.0811 4.3245 -0.2302 40 1 5.7649 4.6796 -1.1830 41 1 3.8538 0.9976 -1.0770 42 1 4.0005 0.8718 0.6929 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234066183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:01 Heat of formation + Delta-G solvation = -8.091021 kcal Electronic energy + Delta-G solvation = -18599.750612 eV Core-core repulsion = 16000.011596 eV Total energy + Delta-G solvation = -2599.739017 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.27728 -35.88385 -33.51389 -32.81474 -31.08640 -29.87313 -28.33777 -25.52626 -23.77773 -22.99672 -22.10373 -21.22554 -19.66498 -18.46962 -16.32579 -15.52879 -15.02993 -14.84983 -14.53854 -14.34975 -14.04667 -13.68607 -13.12207 -13.03539 -12.63351 -12.31535 -12.05394 -11.76248 -11.56047 -11.36661 -11.27488 -11.01563 -10.80557 -10.76828 -10.60103 -10.54572 -10.30764 -9.84176 -9.74867 -9.61163 -9.37742 -8.89733 -8.16605 -7.53649 -7.15246 -5.85313 -3.83318 3.39628 3.44099 3.47053 4.56168 4.70441 4.84288 4.97788 5.08235 5.24780 5.41798 5.49668 5.50783 5.60936 5.65717 5.74767 5.88508 5.93825 5.94073 6.01298 6.02871 6.06715 6.19862 6.23130 6.30263 6.41466 6.44221 6.54012 6.62709 6.76653 6.80772 7.21544 7.48047 7.71739 7.84470 7.95680 7.96729 8.11181 8.26086 8.30096 8.71132 9.24103 9.77763 11.26103 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033605 B = 0.006057 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.010969 B = 4621.858475 C = 4957.222446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.088 4.088 4 H 0.065 0.935 5 C -0.108 4.108 6 C 0.051 3.949 7 N -0.531 5.531 8 C 0.048 3.952 9 C 0.011 3.989 10 C -0.488 4.488 11 H 0.051 0.949 12 C 0.051 3.949 13 N -0.904 5.904 14 Si 0.886 3.114 15 H -0.279 1.279 16 H -0.291 1.291 17 H -0.280 1.280 18 C 0.086 3.914 19 H 0.046 0.954 20 C 0.071 3.929 21 N -0.822 5.822 22 C -0.104 4.104 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.036 0.964 32 H 0.033 0.967 33 H 0.114 0.886 34 H 0.021 0.979 35 H -0.005 1.005 36 H 0.256 0.744 37 H 0.070 0.930 38 H 0.017 0.983 39 H 0.327 0.673 40 H 0.350 0.650 41 H 0.056 0.944 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.928 -14.530 2.223 14.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.107 4.107 4 H 0.084 0.916 5 C -0.146 4.146 6 C -0.077 4.077 7 N -0.255 5.255 8 C -0.079 4.079 9 C -0.028 4.028 10 C -0.527 4.527 11 H 0.070 0.930 12 C -0.148 4.148 13 N -0.545 5.545 14 Si 0.715 3.285 15 H -0.205 1.205 16 H -0.217 1.217 17 H -0.206 1.206 18 C -0.023 4.023 19 H 0.064 0.936 20 C -0.061 4.061 21 N -0.353 5.353 22 C -0.143 4.143 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.132 0.868 34 H 0.040 0.960 35 H 0.014 0.986 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.035 0.965 39 H 0.139 0.861 40 H 0.166 0.834 41 H 0.074 0.926 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.250 -14.596 3.097 14.973 hybrid contribution 0.505 1.285 -1.610 2.121 sum -0.744 -13.311 1.487 13.414 Atomic orbital electron populations 1.21815 0.96221 1.00997 1.02019 1.21546 0.95615 0.96731 1.01486 1.21202 0.95690 0.95321 0.98448 0.91645 1.21667 0.99326 0.96478 0.97134 1.22028 0.89589 0.95301 1.00802 1.62388 1.07469 1.24107 1.31544 1.22820 1.02581 0.84844 0.97629 1.19500 0.94747 0.94234 0.94277 1.21109 1.22949 0.98671 1.09957 0.93033 1.24994 0.95623 0.98284 0.95906 1.69965 1.35485 1.34143 1.14912 0.86768 0.80054 0.84506 0.77219 1.20514 1.21735 1.20565 1.21524 0.94338 0.93796 0.92669 0.93571 1.21750 0.95054 0.90067 0.99203 1.59270 1.15380 1.17129 1.43522 1.21640 0.94968 0.96726 1.00950 0.92445 0.92881 0.93293 0.92472 0.92186 0.91822 0.92306 0.91691 0.94569 0.94814 0.86814 0.96047 0.98648 0.93443 0.91166 0.96485 0.86146 0.83403 0.92570 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.68 37.16 0.36 -1.19 16 2 C -0.12 -1.28 5.41 -26.73 -0.14 -1.42 16 3 C -0.09 -1.18 2.25 -90.50 -0.20 -1.39 16 4 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 5 C -0.11 -1.54 5.08 -26.65 -0.14 -1.68 16 6 C 0.05 0.92 5.03 -3.83 -0.02 0.90 16 7 N -0.53 -9.90 4.69 -226.69 -1.06 -10.97 16 8 C 0.05 1.04 4.68 -3.83 -0.02 1.02 16 9 C 0.01 0.27 3.46 -27.89 -0.10 0.17 16 10 C -0.49 -13.63 9.11 -34.44 -0.31 -13.94 16 11 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 12 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 13 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 14 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 18 C 0.09 1.47 1.82 -67.72 -0.12 1.35 16 19 H 0.05 0.94 6.49 -51.93 -0.34 0.60 16 20 C 0.07 1.10 5.98 -3.82 -0.02 1.08 16 21 N -0.82 -14.25 5.11 -10.37 -0.05 -14.30 16 22 C -0.10 -1.46 4.65 -26.65 -0.12 -1.59 16 23 H 0.06 0.58 6.64 -51.93 -0.34 0.24 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.77 6.71 -51.93 -0.35 0.42 16 30 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 31 H 0.04 0.74 6.87 -51.93 -0.36 0.38 16 32 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 33 H 0.11 2.47 5.29 -51.93 -0.27 2.19 16 34 H 0.02 0.57 4.38 -51.93 -0.23 0.34 16 35 H 0.00 -0.14 6.96 -51.93 -0.36 -0.50 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.02 0.24 8.13 -51.93 -0.42 -0.18 16 39 H 0.33 4.90 9.08 -39.29 -0.36 4.54 16 40 H 0.35 6.75 7.62 -39.29 -0.30 6.45 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 310.18 15.07 4.67 4.67 Total: -1.00 -29.42 310.18 -9.18 -38.60 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -7.51 Total: 6.93 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -0.94 Total: -15.32 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.38 Total: -51.79 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.42 -9.18 -38.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234066183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.505 kcal (2) G-P(sol) polarization free energy of solvation -29.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds