Wall clock time and date at job start Mon Mar 30 2020 05:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47216 * 2 1 4 4 H 1.08998 * 109.52279 * 305.13151 * 3 2 1 5 5 C 1.53122 * 109.57133 * 65.29648 * 3 2 1 6 6 C 1.53041 * 109.27641 * 177.59965 * 5 3 2 7 7 N 1.46846 * 109.51282 * 300.80582 * 6 5 3 8 8 C 1.46900 * 110.99892 * 185.84314 * 7 6 5 9 9 C 1.52997 * 109.47287 * 294.76957 * 8 7 6 10 10 C 1.50699 * 109.47406 * 185.85061 * 9 8 7 11 11 H 1.08001 * 120.00202 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00350 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99766 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00383 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46563 * 60.00030 * 14 12 10 16 16 H 1.48495 * 109.47497 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47074 * 300.00531 * 14 12 10 18 18 C 1.46843 * 111.19967 * 61.74818 * 7 6 5 19 19 H 1.09001 * 109.46488 * 58.26298 * 18 7 6 20 20 C 1.53009 * 109.46445 * 178.23819 * 18 7 6 21 21 N 1.46896 * 109.47199 * 291.80422 * 20 18 7 22 22 C 1.53035 * 109.52599 * 298.25667 * 18 7 6 23 23 H 1.08998 * 109.46457 * 299.99687 * 1 2 3 24 24 H 1.08992 * 109.47018 * 59.99965 * 1 2 3 25 25 H 1.08994 * 109.46975 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46766 * 239.99865 * 2 1 3 27 27 H 1.09001 * 109.47129 * 120.00119 * 2 1 3 28 28 H 1.09001 * 109.51362 * 57.65766 * 5 3 2 29 29 H 1.08994 * 109.49781 * 297.53729 * 5 3 2 30 30 H 1.08997 * 109.46370 * 180.79951 * 6 5 3 31 31 H 1.08993 * 109.46442 * 60.81482 * 6 5 3 32 32 H 1.08997 * 109.47182 * 54.76786 * 8 7 6 33 33 H 1.09004 * 109.47331 * 174.76855 * 8 7 6 34 34 H 1.09004 * 109.47370 * 305.85239 * 9 8 7 35 35 H 1.09004 * 109.47089 * 65.85049 * 9 8 7 36 36 H 0.96998 * 119.99674 * 179.97438 * 13 12 10 37 37 H 1.08998 * 109.46861 * 51.80502 * 20 18 7 38 38 H 1.09003 * 109.46839 * 171.80386 * 20 18 7 39 39 H 1.00902 * 111.00125 * 170.63948 * 21 20 18 40 40 H 1.00905 * 111.00156 * 294.59620 * 21 20 18 41 41 H 1.09004 * 109.50664 * 179.12079 * 22 18 7 42 42 H 1.09003 * 109.50347 * 299.19964 * 22 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6042 1.9830 -0.8402 5 6 1.6426 2.1271 1.3107 6 6 2.2071 3.5494 1.3292 7 7 3.6696 3.4983 1.2069 8 6 4.2577 4.8358 1.3599 9 6 3.8087 5.7261 0.1994 10 6 4.5235 7.0505 0.2767 11 1 5.2273 7.2387 1.0740 12 6 4.2790 8.0222 -0.6705 13 7 3.4215 7.7933 -1.6411 14 14 5.1644 9.6642 -0.5743 15 1 6.6302 9.4417 -0.6587 16 1 4.7297 10.5279 -1.7014 17 1 4.8378 10.3280 0.7132 18 6 4.0750 2.8876 -0.0655 19 1 3.6515 3.4570 -0.8929 20 6 5.6015 2.8943 -0.1707 21 7 6.0765 4.2772 -0.3117 22 6 3.5661 1.4456 -0.1258 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.0464 1.5644 2.1524 29 1 0.5559 2.1658 1.3859 30 1 1.9379 4.0348 2.2673 31 1 1.7925 4.1156 0.4953 32 1 3.9267 5.2726 2.3020 33 1 5.3449 4.7571 1.3579 34 1 4.0476 5.2389 -0.7459 35 1 2.7328 5.8896 0.2621 36 1 3.2493 8.4770 -2.3073 37 1 6.0296 2.4530 0.7293 38 1 5.9082 2.3143 -1.0411 39 1 7.0811 4.3245 -0.2302 40 1 5.7649 4.6796 -1.1830 41 1 3.8538 0.9976 -1.0770 42 1 4.0005 0.8718 0.6929 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234066183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:01 Heat of formation + Delta-G solvation = -27.490028 kcal Electronic energy + Delta-G solvation = -18600.591816 eV Core-core repulsion = 16000.011596 eV Total energy + Delta-G solvation = -2600.580221 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.66694 -37.15409 -35.12301 -34.63836 -32.51952 -31.23993 -30.00629 -27.04211 -25.44191 -24.40201 -23.35485 -22.86683 -20.78957 -20.02763 -18.41821 -17.02789 -16.52947 -16.42708 -16.03870 -15.63595 -15.41288 -14.97083 -14.42379 -14.37409 -14.24290 -13.91067 -13.64893 -13.12905 -12.92556 -12.82645 -12.69901 -12.54372 -12.43553 -12.28067 -12.03589 -11.85419 -11.67674 -11.40135 -11.28936 -11.13475 -11.00790 -10.83693 -10.37220 -9.01090 -8.79857 -8.06935 -6.13381 1.41788 1.44033 1.51424 2.47554 3.25255 3.26254 3.66502 3.91061 3.93606 4.06653 4.31689 4.38571 4.43332 4.51043 4.61462 4.66647 4.69404 4.77127 4.85537 4.87471 4.95808 4.98561 5.11522 5.13933 5.17926 5.24133 5.27767 5.31555 5.37912 5.46047 5.52492 5.63819 5.73964 5.90323 6.08305 6.26552 6.41864 6.57997 6.64900 6.76875 7.04215 7.52419 9.03819 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033605 B = 0.006057 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.010969 B = 4621.858475 C = 4957.222446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 C -0.088 4.088 4 H 0.044 0.956 5 C -0.098 4.098 6 C 0.050 3.950 7 N -0.521 5.521 8 C 0.062 3.938 9 C 0.028 3.972 10 C -0.499 4.499 11 H 0.053 0.947 12 C -0.002 4.002 13 N -0.941 5.941 14 Si 0.955 3.045 15 H -0.266 1.266 16 H -0.291 1.291 17 H -0.275 1.275 18 C 0.083 3.917 19 H 0.006 0.994 20 C 0.075 3.925 21 N -0.838 5.838 22 C -0.097 4.097 23 H 0.055 0.945 24 H 0.045 0.955 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.059 0.941 31 H -0.001 1.001 32 H 0.020 0.980 33 H 0.122 0.878 34 H 0.011 0.989 35 H -0.048 1.048 36 H 0.256 0.744 37 H 0.082 0.918 38 H 0.040 0.960 39 H 0.340 0.660 40 H 0.337 0.663 41 H 0.073 0.927 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.084 -16.098 2.901 16.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C -0.107 4.107 4 H 0.062 0.938 5 C -0.135 4.135 6 C -0.079 4.079 7 N -0.245 5.245 8 C -0.066 4.066 9 C -0.010 4.010 10 C -0.538 4.538 11 H 0.071 0.929 12 C -0.198 4.198 13 N -0.583 5.583 14 Si 0.781 3.219 15 H -0.191 1.191 16 H -0.216 1.216 17 H -0.200 1.200 18 C -0.026 4.026 19 H 0.024 0.976 20 C -0.056 4.056 21 N -0.369 5.369 22 C -0.135 4.135 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.017 0.983 32 H 0.039 0.961 33 H 0.140 0.860 34 H 0.030 0.970 35 H -0.030 1.030 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.058 0.942 39 H 0.154 0.846 40 H 0.150 0.850 41 H 0.091 0.909 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.222 -16.188 3.793 16.628 hybrid contribution 0.158 1.771 -1.830 2.552 sum -0.063 -14.416 1.963 14.550 Atomic orbital electron populations 1.21820 0.95698 1.01988 1.01610 1.21481 0.96033 0.94518 1.02549 1.21198 0.95466 0.96984 0.97007 0.93782 1.21604 0.99974 0.93766 0.98205 1.22085 0.89228 0.97650 0.98930 1.62446 1.07711 1.21804 1.32507 1.22604 1.03037 0.85798 0.95146 1.19318 0.91715 0.94464 0.95517 1.21434 1.22882 0.99677 1.09821 0.92877 1.25825 0.96344 1.02159 0.95464 1.70117 1.37040 1.35395 1.15753 0.85652 0.79330 0.79691 0.77183 1.19090 1.21643 1.20006 1.21661 0.95585 0.95208 0.90122 0.97616 1.21771 0.93675 0.89470 1.00695 1.59165 1.16587 1.18442 1.42683 1.21611 0.95163 0.94275 1.02468 0.92605 0.93624 0.91599 0.91482 0.90984 0.90481 0.91037 0.92231 0.98314 0.96097 0.86045 0.97043 1.02991 0.93500 0.89915 0.94232 0.84611 0.84960 0.90868 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.68 71.98 0.70 -2.07 16 2 C -0.11 -2.07 5.41 30.60 0.17 -1.91 16 3 C -0.09 -2.25 2.25 -10.71 -0.02 -2.27 16 4 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 5 C -0.10 -2.69 5.08 30.65 0.16 -2.54 16 6 C 0.05 1.83 5.03 86.33 0.43 2.27 16 7 N -0.52 -19.59 4.69 -871.12 -4.09 -23.67 16 8 C 0.06 2.74 4.68 86.30 0.40 3.15 16 9 C 0.03 1.50 3.46 29.85 0.10 1.61 16 10 C -0.50 -28.48 9.11 25.60 0.23 -28.25 16 11 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 12 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 13 N -0.94 -58.30 13.29 21.45 0.28 -58.02 16 14 Si 0.96 45.30 29.54 68.60 2.03 47.33 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 16 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 17 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 18 C 0.08 2.84 1.82 44.94 0.08 2.92 16 19 H 0.01 0.25 6.49 -2.39 -0.02 0.23 16 20 C 0.07 2.23 5.98 86.31 0.52 2.75 16 21 N -0.84 -28.82 5.11 -186.71 -0.95 -29.78 16 22 C -0.10 -2.52 4.65 30.65 0.14 -2.38 16 23 H 0.05 1.01 6.64 -2.39 -0.02 1.00 16 24 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.07 1.79 6.71 -2.39 -0.02 1.77 16 30 H 0.06 2.21 8.07 -2.39 -0.02 2.19 16 31 H 0.00 -0.07 6.87 -2.39 -0.02 -0.08 16 32 H 0.02 0.96 8.08 -2.39 -0.02 0.94 16 33 H 0.12 5.25 5.29 -2.38 -0.01 5.24 16 34 H 0.01 0.64 4.38 -2.39 -0.01 0.63 16 35 H -0.05 -2.97 6.96 -2.38 -0.02 -2.99 16 36 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 37 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.04 1.02 8.13 -2.39 -0.02 1.00 16 39 H 0.34 9.86 9.08 -89.69 -0.81 9.05 16 40 H 0.34 13.25 7.62 -89.69 -0.68 12.57 16 41 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -64.78 310.18 0.13 -64.65 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: -0.51 Total: 25.88 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: 3.37 Total: -26.39 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -4.76 Total: -111.47 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -64.78 0.13 -64.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234066183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.160 kcal (2) G-P(sol) polarization free energy of solvation -64.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds