Wall clock time and date at job start Mon Mar 30 2020 04:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46752 * 2 1 4 4 C 1.53004 * 109.47108 * 179.97438 * 3 2 1 5 5 N 1.46890 * 109.47316 * 180.02562 * 4 3 2 6 6 C 1.46956 * 111.00137 * 170.15917 * 5 4 3 7 7 C 1.53053 * 109.36657 * 183.19072 * 6 5 4 8 8 H 1.08998 * 109.49446 * 61.55643 * 7 6 5 9 9 C 1.52997 * 109.49128 * 181.60694 * 7 6 5 10 10 N 1.46956 * 109.36204 * 301.59531 * 7 6 5 11 11 C 1.46894 * 111.00288 * 183.19124 * 10 7 6 12 12 C 1.46955 * 110.88143 * 59.32000 * 10 7 6 13 13 H 1.08995 * 109.50718 * 60.66230 * 12 10 7 14 14 C 1.50708 * 109.49032 * 180.71311 * 12 10 7 15 15 H 1.07991 * 119.99789 * 359.89620 * 14 12 10 16 16 C 1.37877 * 120.00008 * 179.88931 * 14 12 10 17 17 N 1.31514 * 120.00089 * 180.02562 * 16 14 12 18 18 Si 1.86798 * 119.99938 * 0.02562 * 16 14 12 19 19 H 1.48506 * 109.47297 * 269.99556 * 18 16 14 20 20 H 1.48503 * 109.47261 * 149.99737 * 18 16 14 21 21 H 1.48500 * 109.47454 * 29.99730 * 18 16 14 22 22 C 1.46965 * 111.00002 * 293.95386 * 5 4 3 23 23 H 1.08998 * 109.47467 * 299.99765 * 1 2 3 24 24 H 1.09003 * 109.47441 * 60.00323 * 1 2 3 25 25 H 1.09002 * 109.46926 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46978 * 240.00406 * 2 1 3 27 27 H 1.08998 * 109.46926 * 120.00188 * 2 1 3 28 28 H 1.09004 * 109.46731 * 60.00604 * 3 2 1 29 29 H 1.08990 * 109.47523 * 300.00160 * 3 2 1 30 30 H 1.09002 * 109.46520 * 59.99970 * 4 3 2 31 31 H 1.08998 * 109.46838 * 300.00353 * 4 3 2 32 32 H 1.09007 * 109.48443 * 303.14903 * 6 5 4 33 33 H 1.08990 * 109.49179 * 63.19682 * 6 5 4 34 34 H 1.09000 * 109.46889 * 59.99410 * 9 7 6 35 35 H 1.08999 * 109.47075 * 179.97438 * 9 7 6 36 36 H 1.09001 * 109.47304 * 299.99797 * 9 7 6 37 37 H 1.09003 * 109.47035 * 296.19855 * 11 10 7 38 38 H 1.08997 * 109.47541 * 56.19654 * 11 10 7 39 39 H 1.09008 * 109.47741 * 176.20201 * 11 10 7 40 40 H 0.96997 * 119.99848 * 180.02562 * 17 16 14 41 41 H 1.08994 * 109.48704 * 56.84759 * 22 5 4 42 42 H 1.08998 * 109.48436 * 296.78087 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0596 2.8275 0.0013 6 6 5.5095 2.8735 0.2364 7 6 5.9659 4.3325 0.3089 8 1 5.4692 4.8280 1.1431 9 6 7.4812 4.3838 0.5136 10 7 5.6167 5.0151 -0.9449 11 6 6.1064 6.4000 -0.9443 12 6 4.1669 4.9692 -1.1801 13 1 3.6495 5.4720 -0.3630 14 6 3.8461 5.6614 -2.4798 15 1 4.6394 6.0939 -3.0712 16 6 2.5399 5.7424 -2.9137 17 7 2.2601 6.3460 -4.0481 18 14 1.1677 4.9947 -1.8902 19 1 0.9557 3.5837 -2.3019 20 1 -0.0839 5.7654 -2.1017 21 1 1.5404 5.0405 -0.4535 22 6 3.7104 3.5101 -1.2525 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6766 1.9562 0.8901 29 1 1.6766 1.9563 -0.8899 30 1 3.9336 0.9286 -0.8892 31 1 3.9329 0.9289 0.8908 32 1 5.7414 2.3728 1.1765 33 1 6.0265 2.3705 -0.5807 34 1 7.9776 3.8890 -0.3212 35 1 7.8060 5.4231 0.5647 36 1 7.7398 3.8759 1.4427 37 1 5.6064 6.9619 -0.1553 38 1 7.1820 6.4051 -0.7682 39 1 5.8940 6.8610 -1.9090 40 1 1.3411 6.4033 -4.3531 41 1 2.6309 3.4736 -1.3980 42 1 4.2071 3.0146 -2.0867 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249807535.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:44 Heat of formation + Delta-G solvation = 6.885930 kcal Electronic energy + Delta-G solvation = -18715.528946 eV Core-core repulsion = 16116.439379 eV Total energy + Delta-G solvation = -2599.089567 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.02120 -36.16600 -33.87844 -33.32150 -31.30853 -29.40936 -27.66802 -25.85380 -25.13970 -23.36604 -21.43190 -21.04876 -20.24442 -18.86082 -16.80020 -15.73827 -15.46988 -14.99387 -14.69119 -13.99233 -13.98823 -13.69918 -13.40338 -13.01552 -12.69490 -12.51058 -12.37173 -12.12626 -11.71191 -11.47738 -11.36267 -11.11017 -11.05720 -10.86043 -10.74447 -10.62430 -10.36648 -10.30181 -10.17249 -9.89180 -9.38661 -9.07761 -8.57244 -7.79712 -7.30507 -6.09693 -4.09082 3.22956 3.36486 3.42871 4.32596 4.39357 4.76762 5.03485 5.10603 5.22634 5.23758 5.32656 5.45202 5.62709 5.69752 5.72345 5.81404 5.84218 5.92351 5.96387 5.98147 6.01760 6.05937 6.20187 6.21115 6.30541 6.34955 6.38370 6.41055 6.51313 6.54785 6.59009 6.70304 6.92191 7.20038 7.41112 7.60516 7.72193 7.96707 8.12765 8.65146 8.97404 9.51814 11.02491 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.016044 B = 0.011367 C = 0.006989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.795962 B = 2462.583207 C = 4005.377627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.125 4.125 4 C 0.057 3.943 5 N -0.549 5.549 6 C 0.070 3.930 7 C 0.077 3.923 8 H 0.038 0.962 9 C -0.142 4.142 10 N -0.527 5.527 11 C 0.036 3.964 12 C 0.192 3.808 13 H 0.006 0.994 14 C -0.507 4.507 15 H 0.085 0.915 16 C 0.072 3.928 17 N -0.896 5.896 18 Si 0.873 3.127 19 H -0.276 1.276 20 H -0.296 1.296 21 H -0.258 1.258 22 C 0.055 3.945 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.029 0.971 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.037 0.963 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.012 0.988 38 H 0.050 0.950 39 H 0.080 0.920 40 H 0.264 0.736 41 H 0.066 0.934 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.959 -9.449 9.667 13.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.163 4.163 4 C -0.071 4.071 5 N -0.273 5.273 6 C -0.059 4.059 7 C -0.032 4.032 8 H 0.056 0.944 9 C -0.200 4.200 10 N -0.252 5.252 11 C -0.113 4.113 12 C 0.084 3.916 13 H 0.024 0.976 14 C -0.545 4.545 15 H 0.103 0.897 16 C -0.130 4.130 17 N -0.534 5.534 18 Si 0.703 3.297 19 H -0.203 1.203 20 H -0.223 1.223 21 H -0.183 1.183 22 C -0.072 4.072 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.031 0.969 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.814 -9.391 9.541 13.680 hybrid contribution -0.941 -0.429 0.381 1.102 sum 1.873 -9.819 9.922 14.084 Atomic orbital electron populations 1.21773 0.96017 1.01190 1.02024 1.21472 0.95803 0.96950 1.01641 1.21718 0.95210 0.96312 1.03034 1.22049 0.95258 0.89799 0.99966 1.62274 1.13288 1.14525 1.37214 1.22064 0.87840 0.96275 0.99705 1.21616 0.94867 0.94346 0.92367 0.94420 1.21846 0.95406 1.01792 1.00971 1.62079 1.16605 1.15489 1.31036 1.22274 0.97775 0.89172 1.02031 1.19712 0.83522 0.91166 0.97182 0.97599 1.20991 0.93989 1.35259 1.04297 0.89726 1.24922 0.98385 0.94944 0.94763 1.69871 1.19626 1.43282 1.20664 0.87081 0.81712 0.78668 0.82237 1.20342 1.22299 1.18282 1.22795 0.99571 0.96622 0.88195 0.92755 0.92706 0.92967 0.92210 0.92181 0.91344 0.91713 0.95243 0.91532 0.91568 0.94508 0.92127 0.92375 0.93002 0.96942 0.93093 0.90107 0.92563 0.91653 0.94212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 37.16 0.37 -1.43 16 2 C -0.12 -1.52 5.93 -26.73 -0.16 -1.68 16 3 C -0.12 -1.99 5.14 -26.73 -0.14 -2.13 16 4 C 0.06 0.93 4.96 -3.83 -0.02 0.91 16 5 N -0.55 -10.62 4.71 -234.47 -1.10 -11.72 16 6 C 0.07 1.20 4.89 -3.77 -0.02 1.18 16 7 C 0.08 1.39 2.56 -67.66 -0.17 1.22 16 8 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 9 C -0.14 -2.02 8.87 37.16 0.33 -1.69 16 10 N -0.53 -11.31 4.59 -228.14 -1.05 -12.36 16 11 C 0.04 0.70 8.90 60.06 0.53 1.24 16 12 C 0.19 4.72 1.54 -68.80 -0.11 4.61 16 13 H 0.01 0.17 7.20 -51.93 -0.37 -0.20 16 14 C -0.51 -14.26 8.51 -34.44 -0.29 -14.56 16 15 H 0.08 2.57 6.69 -52.49 -0.35 2.22 16 16 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 17 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 18 Si 0.87 21.95 24.23 -169.99 -4.12 17.83 16 19 H -0.28 -6.68 6.44 56.52 0.36 -6.32 16 20 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 21 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16 22 C 0.06 1.26 4.15 -3.76 -0.02 1.25 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.06 1.20 5.92 -51.93 -0.31 0.90 16 30 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 31 H 0.07 0.93 8.03 -51.93 -0.42 0.51 16 32 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.79 6.28 -51.93 -0.33 0.47 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.05 0.85 6.04 -51.93 -0.31 0.53 16 39 H 0.08 1.76 6.28 -51.92 -0.33 1.43 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.07 1.55 1.54 -51.93 -0.08 1.47 16 42 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 308.59 15.07 4.65 4.65 Total: -1.00 -29.87 308.59 -8.25 -38.12 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -7.61 Total: -0.94 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 0.21 Total: -9.10 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -1.38 Total: -50.56 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.12 Total: 17.83 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.87 -8.25 -38.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249807535.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.006 kcal (2) G-P(sol) polarization free energy of solvation -29.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds