Wall clock time and date at job start Mon Mar 30 2020 04:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46752 * 2 1 4 4 C 1.53004 * 109.47108 * 179.97438 * 3 2 1 5 5 N 1.46890 * 109.47316 * 180.02562 * 4 3 2 6 6 C 1.46956 * 111.00137 * 170.15917 * 5 4 3 7 7 C 1.53053 * 109.36657 * 183.19072 * 6 5 4 8 8 H 1.08998 * 109.49446 * 61.55643 * 7 6 5 9 9 C 1.52997 * 109.49128 * 181.60694 * 7 6 5 10 10 N 1.46956 * 109.36204 * 301.59531 * 7 6 5 11 11 C 1.46894 * 111.00288 * 183.19124 * 10 7 6 12 12 C 1.46955 * 110.88143 * 59.32000 * 10 7 6 13 13 H 1.08995 * 109.50718 * 60.66230 * 12 10 7 14 14 C 1.50708 * 109.49032 * 180.71311 * 12 10 7 15 15 H 1.07991 * 119.99789 * 359.89620 * 14 12 10 16 16 C 1.37877 * 120.00008 * 179.88931 * 14 12 10 17 17 N 1.31514 * 120.00089 * 180.02562 * 16 14 12 18 18 Si 1.86798 * 119.99938 * 0.02562 * 16 14 12 19 19 H 1.48506 * 109.47297 * 269.99556 * 18 16 14 20 20 H 1.48503 * 109.47261 * 149.99737 * 18 16 14 21 21 H 1.48500 * 109.47454 * 29.99730 * 18 16 14 22 22 C 1.46965 * 111.00002 * 293.95386 * 5 4 3 23 23 H 1.08998 * 109.47467 * 299.99765 * 1 2 3 24 24 H 1.09003 * 109.47441 * 60.00323 * 1 2 3 25 25 H 1.09002 * 109.46926 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46978 * 240.00406 * 2 1 3 27 27 H 1.08998 * 109.46926 * 120.00188 * 2 1 3 28 28 H 1.09004 * 109.46731 * 60.00604 * 3 2 1 29 29 H 1.08990 * 109.47523 * 300.00160 * 3 2 1 30 30 H 1.09002 * 109.46520 * 59.99970 * 4 3 2 31 31 H 1.08998 * 109.46838 * 300.00353 * 4 3 2 32 32 H 1.09007 * 109.48443 * 303.14903 * 6 5 4 33 33 H 1.08990 * 109.49179 * 63.19682 * 6 5 4 34 34 H 1.09000 * 109.46889 * 59.99410 * 9 7 6 35 35 H 1.08999 * 109.47075 * 179.97438 * 9 7 6 36 36 H 1.09001 * 109.47304 * 299.99797 * 9 7 6 37 37 H 1.09003 * 109.47035 * 296.19855 * 11 10 7 38 38 H 1.08997 * 109.47541 * 56.19654 * 11 10 7 39 39 H 1.09008 * 109.47741 * 176.20201 * 11 10 7 40 40 H 0.96997 * 119.99848 * 180.02562 * 17 16 14 41 41 H 1.08994 * 109.48704 * 56.84759 * 22 5 4 42 42 H 1.08998 * 109.48436 * 296.78087 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0596 2.8275 0.0013 6 6 5.5095 2.8735 0.2364 7 6 5.9659 4.3325 0.3089 8 1 5.4692 4.8280 1.1431 9 6 7.4812 4.3838 0.5136 10 7 5.6167 5.0151 -0.9449 11 6 6.1064 6.4000 -0.9443 12 6 4.1669 4.9692 -1.1801 13 1 3.6495 5.4720 -0.3630 14 6 3.8461 5.6614 -2.4798 15 1 4.6394 6.0939 -3.0712 16 6 2.5399 5.7424 -2.9137 17 7 2.2601 6.3460 -4.0481 18 14 1.1677 4.9947 -1.8902 19 1 0.9557 3.5837 -2.3019 20 1 -0.0839 5.7654 -2.1017 21 1 1.5404 5.0405 -0.4535 22 6 3.7104 3.5101 -1.2525 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6766 1.9562 0.8901 29 1 1.6766 1.9563 -0.8899 30 1 3.9336 0.9286 -0.8892 31 1 3.9329 0.9289 0.8908 32 1 5.7414 2.3728 1.1765 33 1 6.0265 2.3705 -0.5807 34 1 7.9776 3.8890 -0.3212 35 1 7.8060 5.4231 0.5647 36 1 7.7398 3.8759 1.4427 37 1 5.6064 6.9619 -0.1553 38 1 7.1820 6.4051 -0.7682 39 1 5.8940 6.8610 -1.9090 40 1 1.3411 6.4033 -4.3531 41 1 2.6309 3.4736 -1.3980 42 1 4.2071 3.0146 -2.0867 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249807535.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:43 Heat of formation + Delta-G solvation = -14.931149 kcal Electronic energy + Delta-G solvation = -18716.475005 eV Core-core repulsion = 16116.439379 eV Total energy + Delta-G solvation = -2600.035627 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.60141 -37.53390 -35.30303 -35.10921 -33.15907 -30.80004 -29.10505 -27.27077 -27.06996 -24.72121 -22.89951 -22.58177 -21.56721 -20.47827 -18.92223 -17.43929 -16.79633 -16.54013 -16.09746 -15.88720 -15.34299 -15.25130 -14.93780 -14.56631 -14.23248 -13.97363 -13.69941 -13.39392 -13.11700 -13.03321 -12.93267 -12.60765 -12.34689 -12.32849 -12.18117 -12.04045 -11.96812 -11.85452 -11.59289 -11.49275 -11.10180 -11.08444 -10.73788 -9.32165 -9.02676 -8.35349 -6.38620 1.20326 1.28222 1.39658 2.23702 2.88005 3.03799 3.19463 3.85859 3.95984 4.01734 4.17502 4.23515 4.28686 4.36809 4.45349 4.46602 4.51940 4.62541 4.69355 4.70189 4.75742 4.82790 4.87426 4.88149 4.96119 5.04146 5.05588 5.10318 5.17469 5.21689 5.24300 5.33363 5.40107 5.42921 5.52322 5.96468 6.06500 6.14988 6.41058 6.67151 6.70565 7.26403 8.80318 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.016044 B = 0.011367 C = 0.006989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.795962 B = 2462.583207 C = 4005.377627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.125 4.125 4 C 0.057 3.943 5 N -0.557 5.557 6 C 0.068 3.932 7 C 0.072 3.928 8 H 0.030 0.970 9 C -0.133 4.133 10 N -0.540 5.540 11 C 0.040 3.960 12 C 0.198 3.802 13 H -0.014 1.014 14 C -0.509 4.509 15 H 0.049 0.951 16 C 0.021 3.979 17 N -0.940 5.940 18 Si 0.934 3.066 19 H -0.263 1.263 20 H -0.294 1.294 21 H -0.255 1.255 22 C 0.067 3.933 23 H 0.056 0.944 24 H 0.038 0.962 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.031 0.969 30 H 0.029 0.971 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.034 0.966 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.010 0.990 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.267 0.733 41 H 0.055 0.945 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.609 -11.774 12.269 17.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C -0.163 4.163 4 C -0.070 4.070 5 N -0.282 5.282 6 C -0.059 4.059 7 C -0.037 4.037 8 H 0.048 0.952 9 C -0.191 4.191 10 N -0.266 5.266 11 C -0.108 4.108 12 C 0.089 3.911 13 H 0.003 0.997 14 C -0.547 4.547 15 H 0.067 0.933 16 C -0.177 4.177 17 N -0.580 5.580 18 Si 0.761 3.239 19 H -0.189 1.189 20 H -0.221 1.221 21 H -0.179 1.179 22 C -0.061 4.061 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.029 0.971 38 H 0.105 0.895 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 3.488 -11.732 12.159 17.252 hybrid contribution -1.039 0.326 -0.423 1.168 sum 2.449 -11.405 11.736 16.547 Atomic orbital electron populations 1.21795 0.95565 1.02386 1.01421 1.21448 0.96204 0.94759 1.02867 1.21730 0.95183 0.98228 1.01173 1.22184 0.95342 0.88037 1.01470 1.62261 1.14963 1.16441 1.34517 1.22217 0.86348 0.95958 1.01428 1.21840 0.97530 0.94312 0.90004 0.95239 1.21789 0.92077 1.02637 1.02549 1.62058 1.14283 1.16431 1.33800 1.22231 0.99948 0.88444 1.00181 1.19456 0.85705 0.91809 0.94150 0.99690 1.21207 0.93198 1.34992 1.05348 0.93324 1.25657 1.00823 0.95470 0.95773 1.70000 1.20335 1.45137 1.22526 0.86100 0.78589 0.78449 0.80715 1.18909 1.22096 1.17907 1.22401 0.98559 0.95586 0.89523 0.92455 0.94270 0.90890 0.91992 0.89861 0.91685 0.95045 0.95295 0.88194 0.87773 0.94790 0.92200 0.91912 0.89818 0.97147 0.89453 0.93256 0.92355 0.92731 0.96170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.91 71.98 0.71 -2.56 16 2 C -0.11 -2.56 5.93 30.59 0.18 -2.38 16 3 C -0.13 -3.73 5.14 30.59 0.16 -3.57 16 4 C 0.06 1.68 4.96 86.31 0.43 2.11 16 5 N -0.56 -20.44 4.71 -895.72 -4.22 -24.66 16 6 C 0.07 2.14 4.89 86.31 0.42 2.56 16 7 C 0.07 2.41 2.56 44.92 0.12 2.53 16 8 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 9 C -0.13 -3.29 8.87 71.98 0.64 -2.65 16 10 N -0.54 -23.10 4.59 -875.71 -4.02 -27.12 16 11 C 0.04 1.59 8.90 127.69 1.14 2.73 16 12 C 0.20 9.87 1.54 44.18 0.07 9.94 16 13 H -0.01 -0.77 7.20 -2.39 -0.02 -0.78 16 14 C -0.51 -29.88 8.51 25.60 0.22 -29.66 16 15 H 0.05 3.14 6.69 -2.92 -0.02 3.12 16 16 C 0.02 1.25 5.45 84.65 0.46 1.71 16 17 N -0.94 -59.33 13.96 21.45 0.30 -59.03 16 18 Si 0.93 46.67 24.23 68.60 1.66 48.33 16 19 H -0.26 -12.46 6.44 99.48 0.64 -11.82 16 20 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 21 H -0.25 -12.45 6.53 99.48 0.65 -11.80 16 22 C 0.07 3.07 4.15 86.31 0.36 3.43 16 23 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 28 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.03 1.13 5.92 -2.39 -0.01 1.12 16 30 H 0.03 0.87 8.12 -2.39 -0.02 0.85 16 31 H 0.10 2.31 8.03 -2.39 -0.02 2.29 16 32 H 0.10 2.51 8.07 -2.38 -0.02 2.49 16 33 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.06 1.49 6.28 -2.39 -0.01 1.48 16 36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.09 2.79 6.04 -2.39 -0.01 2.78 16 39 H 0.05 2.24 6.28 -2.38 -0.01 2.23 16 40 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 41 H 0.05 2.60 1.54 -2.39 0.00 2.59 16 42 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -67.39 308.59 -0.54 -67.93 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.84 Total: 10.37 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: 4.90 Total: -15.81 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -7.94 Total: -110.81 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.66 Total: 48.33 kcal Total: -67.39 -0.54 -67.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249807535.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.000 kcal (2) G-P(sol) polarization free energy of solvation -67.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds