Wall clock time and date at job start Mon Mar 30 2020 04:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47024 * 2 1 4 4 C 1.53005 * 109.47024 * 180.02562 * 3 2 1 5 5 N 1.46894 * 109.47472 * 185.05707 * 4 3 2 6 6 C 1.47913 * 110.99905 * 63.32435 * 5 4 3 7 7 C 1.50800 * 108.49449 * 153.76538 * 6 5 4 8 8 C 1.53697 * 112.10020 * 92.55810 * 7 6 5 9 9 N 1.48071 * 112.46555 * 318.55878 * 8 7 6 10 10 C 1.46893 * 110.99886 * 192.18943 * 9 8 7 11 11 C 1.44643 * 113.77963 * 318.31259 * 9 8 7 12 12 C 1.40016 * 111.00118 * 295.35240 * 5 4 3 13 13 H 1.08994 * 108.96421 * 67.50972 * 12 5 4 14 14 C 1.50704 * 108.95626 * 308.76190 * 12 5 4 15 15 H 1.08001 * 120.00237 * 354.39547 * 14 12 5 16 16 C 1.37878 * 119.99720 * 174.12239 * 14 12 5 17 17 N 1.31516 * 119.99758 * 180.27829 * 16 14 12 18 18 Si 1.86793 * 119.99991 * 0.27441 * 16 14 12 19 19 H 1.48499 * 109.47178 * 90.00333 * 18 16 14 20 20 H 1.48508 * 109.47183 * 210.00131 * 18 16 14 21 21 H 1.48499 * 109.47409 * 329.99985 * 18 16 14 22 22 H 1.08996 * 109.47026 * 60.00069 * 1 2 3 23 23 H 1.08999 * 109.46909 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46961 * 300.00289 * 1 2 3 25 25 H 1.08998 * 109.46961 * 239.99711 * 2 1 3 26 26 H 1.09003 * 109.46870 * 119.99610 * 2 1 3 27 27 H 1.08998 * 109.47487 * 60.00034 * 3 2 1 28 28 H 1.09003 * 109.46978 * 299.99544 * 3 2 1 29 29 H 1.09004 * 109.47108 * 65.05865 * 4 3 2 30 30 H 1.09002 * 109.47053 * 305.06085 * 4 3 2 31 31 H 1.09006 * 109.63047 * 273.46482 * 6 5 4 32 32 H 1.08998 * 109.63050 * 34.06445 * 6 5 4 33 33 H 1.08997 * 108.95586 * 213.23609 * 7 6 5 34 34 H 1.09001 * 108.95285 * 331.88823 * 7 6 5 35 35 H 1.08994 * 108.88002 * 79.32771 * 8 7 6 36 36 H 1.09001 * 108.88541 * 197.79094 * 8 7 6 37 37 H 1.09001 * 109.46965 * 63.95568 * 10 9 8 38 38 H 1.09001 * 109.47458 * 183.95196 * 10 9 8 39 39 H 1.09000 * 109.47533 * 303.95946 * 10 9 8 40 40 H 1.08995 * 109.65997 * 334.48985 * 11 9 8 41 41 H 1.08999 * 109.51969 * 214.09434 * 11 9 8 42 42 H 0.97000 * 120.00068 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0598 2.8219 0.1214 6 6 3.6526 3.4166 1.4131 7 6 4.6473 4.4887 1.7808 8 6 4.2121 5.8764 1.2838 9 7 3.6436 5.8353 -0.0828 10 6 3.5075 7.1888 -0.6373 11 6 4.3681 4.9727 -0.9902 12 6 3.6990 3.5834 -0.9968 13 1 2.6166 3.7115 -1.0038 14 6 4.1125 2.8467 -2.2448 15 1 4.6832 1.9330 -2.1685 16 6 3.7573 3.3362 -3.4839 17 7 4.1135 2.6904 -4.5728 18 14 2.7702 4.9165 -3.6158 19 1 3.6971 6.0736 -3.6999 20 1 1.9235 4.8710 -4.8351 21 1 1.9050 5.0614 -2.4176 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.6767 1.9563 0.8899 28 1 1.6767 1.9562 -0.8901 29 1 3.9330 1.0092 -0.9327 30 1 3.9337 0.8520 0.8403 31 1 2.6595 3.8558 1.3172 32 1 3.6427 2.6462 2.1840 33 1 4.7518 4.5178 2.8654 34 1 5.6132 4.2417 1.3402 35 1 3.4619 6.2762 1.9660 36 1 5.0773 6.5394 1.2861 37 1 4.4947 7.6378 -0.7461 38 1 3.0234 7.1350 -1.6124 39 1 2.9035 7.7979 0.0352 40 1 5.4023 4.8783 -0.6592 41 1 4.3412 5.3957 -1.9944 42 1 3.8639 3.0350 -5.4445 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249889946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:28 Heat of formation + Delta-G solvation = -5.962532 kcal Electronic energy + Delta-G solvation = -19085.293589 eV Core-core repulsion = 16485.646871 eV Total energy + Delta-G solvation = -2599.646718 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.70752 -37.72301 -35.32569 -34.90178 -33.24297 -30.93917 -28.72949 -27.37822 -26.75547 -24.39309 -23.85185 -22.27544 -21.03846 -20.43589 -18.77177 -17.39898 -16.68356 -16.39210 -15.99135 -15.81169 -15.75359 -15.21674 -14.79000 -14.48683 -14.03751 -13.76906 -13.72826 -13.53747 -13.32115 -13.02188 -12.72074 -12.51505 -12.42099 -12.13211 -12.05551 -11.95508 -11.67373 -11.61292 -11.56803 -11.34511 -11.16544 -10.92123 -10.70969 -9.08085 -8.68158 -8.27067 -6.27949 1.22199 1.31776 1.46102 2.31097 2.95595 3.18360 3.39830 4.02552 4.10807 4.11838 4.18346 4.29632 4.35613 4.39705 4.50412 4.53477 4.63204 4.65962 4.72972 4.80697 4.85718 4.89503 4.93266 4.94527 5.00678 5.03304 5.11564 5.21636 5.25533 5.34257 5.46089 5.48874 5.55482 5.56870 5.68650 6.08879 6.26788 6.31310 6.58673 6.84930 7.04270 7.40082 8.87856 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.015717 B = 0.012402 C = 0.008349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.067665 B = 2257.211670 C = 3352.830238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.138 4.138 4 C 0.072 3.928 5 N -0.550 5.550 6 C 0.070 3.930 7 C -0.116 4.116 8 C 0.064 3.936 9 N -0.574 5.574 10 C 0.027 3.973 11 C 0.070 3.930 12 C 0.221 3.779 13 H -0.017 1.017 14 C -0.499 4.499 15 H 0.048 0.952 16 C 0.018 3.982 17 N -0.945 5.945 18 Si 0.928 3.072 19 H -0.269 1.269 20 H -0.302 1.302 21 H -0.245 1.245 22 H 0.037 0.963 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.046 0.954 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.030 0.970 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.032 0.968 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.036 0.964 37 H 0.028 0.972 38 H 0.043 0.957 39 H 0.090 0.910 40 H 0.036 0.964 41 H 0.041 0.959 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.899 3.581 14.183 15.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.177 4.177 4 C -0.055 4.055 5 N -0.273 5.273 6 C -0.057 4.057 7 C -0.154 4.154 8 C -0.063 4.063 9 N -0.299 5.299 10 C -0.121 4.121 11 C -0.059 4.059 12 C 0.110 3.890 13 H 0.000 1.000 14 C -0.538 4.538 15 H 0.066 0.934 16 C -0.179 4.179 17 N -0.586 5.586 18 Si 0.756 3.244 19 H -0.195 1.195 20 H -0.229 1.229 21 H -0.168 1.168 22 H 0.057 0.943 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.054 0.946 37 H 0.046 0.954 38 H 0.061 0.939 39 H 0.109 0.891 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.847 3.413 14.059 14.970 hybrid contribution -0.250 0.986 -1.292 1.644 sum -4.096 4.399 12.768 14.112 Atomic orbital electron populations 1.21742 0.95270 1.02038 1.01381 1.21418 0.96395 0.95737 1.01835 1.22039 0.97702 0.97629 1.00351 1.22065 0.92557 0.89585 1.01338 1.59302 1.62653 1.03004 1.02320 1.21736 0.96860 0.96654 0.90457 1.21461 0.99120 0.93206 1.01588 1.22474 0.98032 0.97360 0.88426 1.60902 1.54900 1.10524 1.03597 1.22416 1.00267 0.89425 0.99949 1.22196 0.95820 0.94192 0.93645 1.18190 0.92472 0.89860 0.88518 1.00014 1.21447 1.33183 1.09085 0.90074 0.93389 1.25657 0.96762 0.99922 0.95592 1.70026 1.48770 1.41548 0.98293 0.86188 0.79699 0.80989 0.77530 1.19546 1.22939 1.16849 0.94330 0.91395 0.92075 0.93487 0.90452 0.91978 0.95114 0.92724 0.90525 0.94967 0.89949 0.88259 0.92779 0.89563 0.94573 0.95363 0.93850 0.89091 0.94561 0.94035 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.91 71.98 0.71 -3.08 16 2 C -0.12 -3.44 5.93 30.59 0.18 -3.25 16 3 C -0.14 -4.96 4.62 30.59 0.14 -4.82 16 4 C 0.07 2.81 4.82 86.31 0.42 3.22 16 5 N -0.55 -22.60 4.08 -890.66 -3.64 -26.24 16 6 C 0.07 2.24 4.23 85.39 0.36 2.60 16 7 C -0.12 -3.23 5.36 30.11 0.16 -3.07 16 8 C 0.06 1.79 5.48 86.31 0.47 2.27 16 9 N -0.57 -20.85 4.20 -921.26 -3.87 -24.72 16 10 C 0.03 0.86 9.32 127.69 1.19 2.05 16 11 C 0.07 3.10 4.03 87.13 0.35 3.45 16 12 C 0.22 10.51 0.79 45.82 0.04 10.54 16 13 H -0.02 -0.90 5.41 -2.39 -0.01 -0.91 16 14 C -0.50 -28.51 8.11 25.60 0.21 -28.30 16 15 H 0.05 3.03 6.43 -2.91 -0.02 3.01 16 16 C 0.02 1.05 5.42 84.65 0.46 1.51 16 17 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 18 Si 0.93 46.45 23.21 68.60 1.59 48.04 16 19 H -0.27 -12.82 6.80 99.48 0.68 -12.14 16 20 H -0.30 -15.13 7.11 99.48 0.71 -14.43 16 21 H -0.24 -11.89 6.41 99.48 0.64 -11.25 16 22 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.06 2.03 6.89 -2.39 -0.02 2.02 16 28 H 0.03 1.34 6.93 -2.39 -0.02 1.32 16 29 H 0.05 2.56 5.70 -2.38 -0.01 2.54 16 30 H 0.08 2.52 7.99 -2.39 -0.02 2.50 16 31 H 0.03 1.11 7.18 -2.38 -0.02 1.09 16 32 H 0.08 2.24 7.76 -2.39 -0.02 2.22 16 33 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.05 1.74 7.22 -2.39 -0.02 1.72 16 35 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.04 0.95 8.03 -2.39 -0.02 0.93 16 37 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.04 1.50 6.55 -2.39 -0.02 1.49 16 39 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.04 1.62 6.93 -2.39 -0.02 1.60 16 41 H 0.04 1.99 3.42 -2.39 -0.01 1.98 16 42 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -66.01 301.84 -0.05 -66.06 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.87 Total: 13.08 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 4.69 Total: -16.87 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -7.20 Total: -110.32 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.59 Total: 48.04 kcal Total: -66.01 -0.05 -66.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249889946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.099 kcal (2) G-P(sol) polarization free energy of solvation -66.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds