Wall clock time and date at job start Mon Mar 30 2020 04:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47077 * 2 1 4 4 C 1.53000 * 109.47077 * 180.02562 * 3 2 1 5 5 N 1.46899 * 109.47420 * 179.97438 * 4 3 2 6 6 C 1.48070 * 111.00051 * 61.89165 * 5 4 3 7 7 C 1.53691 * 112.47363 * 192.20109 * 6 5 4 8 8 H 1.08995 * 108.96017 * 79.22764 * 7 6 5 9 9 C 1.52997 * 108.95478 * 197.96347 * 7 6 5 10 10 C 1.50797 * 112.10182 * 318.54941 * 7 6 5 11 11 N 1.47911 * 108.49213 * 92.55050 * 10 7 6 12 12 C 1.40016 * 114.07403 * 280.07463 * 11 10 7 13 13 C 1.44577 * 111.00167 * 294.20138 * 5 4 3 14 14 H 1.09010 * 109.56984 * 100.52979 * 13 5 4 15 15 C 1.50698 * 109.57319 * 340.15547 * 13 5 4 16 16 H 1.08000 * 119.99514 * 305.25512 * 15 13 5 17 17 C 1.37876 * 120.00175 * 125.24819 * 15 13 5 18 18 N 1.31510 * 120.00087 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 119.99890 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47037 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47138 * 120.00412 * 19 17 15 22 22 H 1.48496 * 109.46964 * 240.00373 * 19 17 15 23 23 H 1.09003 * 109.47054 * 300.00157 * 1 2 3 24 24 H 1.08996 * 109.47038 * 60.00371 * 1 2 3 25 25 H 1.08999 * 109.47082 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47054 * 239.99843 * 2 1 3 27 27 H 1.09006 * 109.47027 * 120.00142 * 2 1 3 28 28 H 1.09003 * 109.47307 * 59.99997 * 3 2 1 29 29 H 1.08999 * 109.47354 * 299.99580 * 3 2 1 30 30 H 1.09003 * 109.47380 * 299.99782 * 4 3 2 31 31 H 1.09002 * 109.47355 * 60.00297 * 4 3 2 32 32 H 1.09003 * 108.87518 * 312.97217 * 6 5 4 33 33 H 1.08996 * 108.87975 * 71.52622 * 6 5 4 34 34 H 1.09000 * 109.47151 * 59.99763 * 9 7 6 35 35 H 1.09007 * 109.47311 * 179.97438 * 9 7 6 36 36 H 1.09001 * 109.47422 * 300.00055 * 9 7 6 37 37 H 1.08995 * 109.63808 * 212.25428 * 10 7 6 38 38 H 1.09010 * 109.63144 * 332.65568 * 10 7 6 39 39 H 1.00903 * 110.99863 * 153.77496 * 11 10 7 40 40 H 1.08995 * 108.95975 * 182.48127 * 12 11 10 41 41 H 1.09004 * 108.95190 * 301.22340 * 12 11 10 42 42 H 0.96998 * 120.00113 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0597 2.8274 -0.0013 6 6 3.6231 3.5452 1.2180 7 6 3.8530 5.0617 1.1211 8 1 3.0555 5.5033 0.5237 9 6 3.8102 5.6618 2.5278 10 6 5.1807 5.3950 0.4885 11 7 4.9766 5.5704 -0.9659 12 6 4.9023 4.3691 -1.6812 13 6 3.7103 3.5000 -1.2324 14 1 2.8383 4.1331 -1.0678 15 6 3.4018 2.4780 -2.2961 16 1 4.1248 1.7121 -2.5348 17 6 2.1966 2.5207 -2.9643 18 7 1.3163 3.4536 -2.6739 19 14 1.8140 1.2534 -4.2823 20 1 2.9599 0.3188 -4.4178 21 1 0.5978 0.4924 -3.8991 22 1 1.5799 1.9413 -5.5774 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9337 0.9285 0.8891 31 1 3.9330 0.9288 -0.8909 32 1 2.5608 3.3588 1.3756 33 1 4.1791 3.1594 2.0725 34 1 4.5907 5.2096 3.1396 35 1 3.9729 6.7380 2.4688 36 1 2.8367 5.4652 2.9772 37 1 5.5695 6.3183 0.9178 38 1 5.8856 4.5828 0.6670 39 1 5.6767 6.1821 -1.3581 40 1 4.7965 4.5947 -2.7423 41 1 5.8247 3.8087 -1.5289 42 1 0.4683 3.4835 -3.1438 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249907078.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:28 Heat of formation + Delta-G solvation = -0.365789 kcal Electronic energy + Delta-G solvation = -19212.512509 eV Core-core repulsion = 16613.108483 eV Total energy + Delta-G solvation = -2599.404025 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.72278 -35.70888 -33.68916 -33.10960 -32.03350 -28.31900 -27.37640 -25.56827 -24.50173 -23.42425 -21.50803 -20.41976 -19.55466 -18.28300 -16.41584 -15.54434 -15.03671 -14.67262 -14.30039 -14.21467 -13.66562 -13.62705 -12.86868 -12.66036 -12.28850 -12.13961 -12.05078 -11.72587 -11.46541 -11.27071 -10.99994 -10.70070 -10.67019 -10.48626 -10.36156 -10.14986 -10.11863 -9.96188 -9.58778 -9.56056 -9.35837 -8.80882 -8.34507 -7.42457 -6.72189 -6.07615 -4.09478 3.24806 3.34458 3.37615 4.36777 5.02468 5.10930 5.31107 5.45714 5.63188 5.67055 5.70431 5.83517 5.89361 6.07989 6.11341 6.21456 6.27448 6.36150 6.38375 6.42651 6.52090 6.55303 6.58041 6.64902 6.72124 6.78439 6.84048 6.92163 6.93945 7.05635 7.20439 7.50301 7.68733 7.75296 7.88472 8.04405 8.15545 8.40873 8.59752 8.87272 9.09830 9.52996 10.99014 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021436 B = 0.010354 C = 0.007969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.885889 B = 2703.538168 C = 3512.985183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.166 4.166 4 C 0.088 3.912 5 N -0.555 5.555 6 C 0.067 3.933 7 C -0.092 4.092 8 H 0.080 0.920 9 C -0.140 4.140 10 C 0.082 3.918 11 N -0.699 5.699 12 C 0.088 3.912 13 C 0.201 3.799 14 H 0.062 0.938 15 C -0.507 4.507 16 H 0.058 0.942 17 C 0.072 3.928 18 N -0.884 5.884 19 Si 0.879 3.121 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.284 1.284 23 H 0.046 0.954 24 H 0.054 0.946 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.036 0.964 29 H 0.120 0.880 30 H 0.029 0.971 31 H 0.082 0.918 32 H 0.029 0.971 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.039 0.961 39 H 0.325 0.675 40 H 0.060 0.940 41 H -0.001 1.001 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.776 0.015 6.561 7.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.205 4.205 4 C -0.039 4.039 5 N -0.279 5.279 6 C -0.061 4.061 7 C -0.112 4.112 8 H 0.098 0.902 9 C -0.199 4.199 10 C -0.047 4.047 11 N -0.329 5.329 12 C -0.043 4.043 13 C 0.094 3.906 14 H 0.080 0.920 15 C -0.547 4.547 16 H 0.076 0.924 17 C -0.131 4.131 18 N -0.522 5.522 19 Si 0.707 3.293 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.210 1.210 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.138 0.862 30 H 0.047 0.953 31 H 0.100 0.900 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.142 0.858 40 H 0.078 0.922 41 H 0.017 0.983 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.438 0.094 6.575 7.013 hybrid contribution -0.305 -0.922 -0.757 1.231 sum 2.133 -0.828 5.818 6.251 Atomic orbital electron populations 1.21742 0.97084 1.00066 1.01596 1.21398 0.94867 0.98691 1.00351 1.22546 0.98272 0.95464 1.04178 1.21746 0.92456 0.90206 0.99533 1.61283 1.61427 1.02463 1.02713 1.22316 0.97697 0.92548 0.93578 1.20989 0.99135 0.95594 0.95459 0.90163 1.21835 1.01093 1.00038 0.96888 1.21543 0.96221 0.98661 0.88271 1.57780 1.53880 1.18531 1.02745 1.21079 0.98421 0.88428 0.96342 1.19273 0.92881 0.92875 0.85587 0.92009 1.21077 1.01160 1.13204 1.19257 0.92434 1.24875 0.96324 0.95399 0.96457 1.69929 1.07948 1.32724 1.41620 0.86724 0.78583 0.81912 0.82081 1.19569 1.20760 1.20970 0.93493 0.92726 0.93999 0.92653 0.93751 0.94545 0.86155 0.95252 0.89955 0.95329 0.93543 0.93264 0.93011 0.93159 0.92827 0.94302 0.85757 0.92196 0.98296 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.91 37.16 0.37 -2.18 16 2 C -0.11 -2.13 5.93 -26.73 -0.16 -2.29 16 3 C -0.17 -3.55 4.50 -26.73 -0.12 -3.67 16 4 C 0.09 1.89 4.85 -3.82 -0.02 1.87 16 5 N -0.55 -12.22 4.12 -227.64 -0.94 -13.16 16 6 C 0.07 1.31 4.73 -2.82 -0.01 1.30 16 7 C -0.09 -1.67 2.25 -91.37 -0.21 -1.88 16 8 H 0.08 1.70 7.23 -51.93 -0.38 1.32 16 9 C -0.14 -2.00 8.85 37.16 0.33 -1.67 16 10 C 0.08 1.44 5.72 -4.37 -0.03 1.41 16 11 N -0.70 -13.61 6.21 -118.33 -0.73 -14.35 16 12 C 0.09 1.98 5.51 -6.76 -0.04 1.95 16 13 C 0.20 4.88 1.71 -69.49 -0.12 4.76 16 14 H 0.06 1.72 5.73 -51.92 -0.30 1.42 16 15 C -0.51 -13.10 5.26 -34.44 -0.18 -13.28 16 16 H 0.06 1.52 6.90 -52.49 -0.36 1.16 16 17 C 0.07 1.89 3.87 -17.82 -0.07 1.82 16 18 N -0.88 -24.30 11.96 55.43 0.66 -23.64 16 19 Si 0.88 20.59 29.54 -169.99 -5.02 15.57 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.77 6.19 -51.93 -0.32 0.45 16 29 H 0.12 2.98 4.05 -51.93 -0.21 2.77 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.88 5.92 -51.93 -0.31 1.57 16 32 H 0.03 0.60 5.78 -51.93 -0.30 0.30 16 33 H 0.05 0.85 7.95 -51.93 -0.41 0.44 16 34 H 0.05 0.64 8.11 -51.93 -0.42 0.22 16 35 H 0.05 0.67 8.02 -51.93 -0.42 0.26 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.81 7.66 -51.93 -0.40 0.41 16 38 H 0.04 0.72 7.59 -51.92 -0.39 0.33 16 39 H 0.32 5.45 8.86 -39.29 -0.35 5.10 16 40 H 0.06 1.41 7.98 -51.93 -0.41 1.00 16 41 H 0.00 -0.02 8.07 -51.93 -0.42 -0.44 16 42 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 307.58 15.07 4.64 4.64 Total: -1.00 -26.61 307.58 -9.14 -35.75 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -7.49 Total: 7.07 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -0.25 Total: -11.87 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -1.01 Total: -51.14 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.61 -9.14 -35.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249907078.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.384 kcal (2) G-P(sol) polarization free energy of solvation -26.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds