Wall clock time and date at job start Mon Mar 30 2020 04:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47077 * 2 1 4 4 C 1.53000 * 109.47077 * 180.02562 * 3 2 1 5 5 N 1.46899 * 109.47420 * 179.97438 * 4 3 2 6 6 C 1.48070 * 111.00051 * 61.89165 * 5 4 3 7 7 C 1.53691 * 112.47363 * 192.20109 * 6 5 4 8 8 H 1.08995 * 108.96017 * 79.22764 * 7 6 5 9 9 C 1.52997 * 108.95478 * 197.96347 * 7 6 5 10 10 C 1.50797 * 112.10182 * 318.54941 * 7 6 5 11 11 N 1.47911 * 108.49213 * 92.55050 * 10 7 6 12 12 C 1.40016 * 114.07403 * 280.07463 * 11 10 7 13 13 C 1.44577 * 111.00167 * 294.20138 * 5 4 3 14 14 H 1.09010 * 109.56984 * 100.52979 * 13 5 4 15 15 C 1.50698 * 109.57319 * 340.15547 * 13 5 4 16 16 H 1.08000 * 119.99514 * 305.25512 * 15 13 5 17 17 C 1.37876 * 120.00175 * 125.24819 * 15 13 5 18 18 N 1.31510 * 120.00087 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 119.99890 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47037 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47138 * 120.00412 * 19 17 15 22 22 H 1.48496 * 109.46964 * 240.00373 * 19 17 15 23 23 H 1.09003 * 109.47054 * 300.00157 * 1 2 3 24 24 H 1.08996 * 109.47038 * 60.00371 * 1 2 3 25 25 H 1.08999 * 109.47082 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47054 * 239.99843 * 2 1 3 27 27 H 1.09006 * 109.47027 * 120.00142 * 2 1 3 28 28 H 1.09003 * 109.47307 * 59.99997 * 3 2 1 29 29 H 1.08999 * 109.47354 * 299.99580 * 3 2 1 30 30 H 1.09003 * 109.47380 * 299.99782 * 4 3 2 31 31 H 1.09002 * 109.47355 * 60.00297 * 4 3 2 32 32 H 1.09003 * 108.87518 * 312.97217 * 6 5 4 33 33 H 1.08996 * 108.87975 * 71.52622 * 6 5 4 34 34 H 1.09000 * 109.47151 * 59.99763 * 9 7 6 35 35 H 1.09007 * 109.47311 * 179.97438 * 9 7 6 36 36 H 1.09001 * 109.47422 * 300.00055 * 9 7 6 37 37 H 1.08995 * 109.63808 * 212.25428 * 10 7 6 38 38 H 1.09010 * 109.63144 * 332.65568 * 10 7 6 39 39 H 1.00903 * 110.99863 * 153.77496 * 11 10 7 40 40 H 1.08995 * 108.95975 * 182.48127 * 12 11 10 41 41 H 1.09004 * 108.95190 * 301.22340 * 12 11 10 42 42 H 0.96998 * 120.00113 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0597 2.8274 -0.0013 6 6 3.6231 3.5452 1.2180 7 6 3.8530 5.0617 1.1211 8 1 3.0555 5.5033 0.5237 9 6 3.8102 5.6618 2.5278 10 6 5.1807 5.3950 0.4885 11 7 4.9766 5.5704 -0.9659 12 6 4.9023 4.3691 -1.6812 13 6 3.7103 3.5000 -1.2324 14 1 2.8383 4.1331 -1.0678 15 6 3.4018 2.4780 -2.2961 16 1 4.1248 1.7121 -2.5348 17 6 2.1966 2.5207 -2.9643 18 7 1.3163 3.4536 -2.6739 19 14 1.8140 1.2534 -4.2823 20 1 2.9599 0.3188 -4.4178 21 1 0.5978 0.4924 -3.8991 22 1 1.5799 1.9413 -5.5774 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9337 0.9285 0.8891 31 1 3.9330 0.9288 -0.8909 32 1 2.5608 3.3588 1.3756 33 1 4.1791 3.1594 2.0725 34 1 4.5907 5.2096 3.1396 35 1 3.9729 6.7380 2.4688 36 1 2.8367 5.4652 2.9772 37 1 5.5695 6.3183 0.9178 38 1 5.8856 4.5828 0.6670 39 1 5.6767 6.1821 -1.3581 40 1 4.7965 4.5947 -2.7423 41 1 5.8247 3.8087 -1.5289 42 1 0.4683 3.4835 -3.1438 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249907078.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:27 Heat of formation + Delta-G solvation = -17.674402 kcal Electronic energy + Delta-G solvation = -19213.263067 eV Core-core repulsion = 16613.108483 eV Total energy + Delta-G solvation = -2600.154583 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.40466 -37.32353 -35.35623 -34.69713 -33.87582 -30.02386 -29.00933 -27.17436 -26.06192 -25.21443 -23.11716 -22.05870 -21.13828 -20.03321 -18.31768 -17.24949 -16.73979 -16.44400 -15.95410 -15.81287 -15.31537 -15.27606 -14.36826 -14.29249 -13.94621 -13.65361 -13.39613 -13.30102 -13.20946 -12.89206 -12.84045 -12.39333 -12.20030 -12.16946 -11.86731 -11.81865 -11.71111 -11.49759 -11.32495 -11.24796 -11.11019 -10.74926 -10.30970 -9.03363 -8.51999 -8.11042 -6.16993 1.35530 1.40521 1.48814 2.40838 3.14460 3.53724 3.63169 4.07270 4.15084 4.20282 4.25421 4.41147 4.42858 4.63318 4.68805 4.75633 4.83948 4.88915 4.90482 4.92991 4.97646 5.01162 5.04292 5.07169 5.16896 5.26044 5.29634 5.36363 5.38467 5.45844 5.55887 5.68087 5.72093 5.80144 6.05402 6.13100 6.56239 6.67547 6.87711 7.05478 7.10176 7.49141 8.95953 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021436 B = 0.010354 C = 0.007969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.885889 B = 2703.538168 C = 3512.985183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.162 4.162 4 C 0.090 3.910 5 N -0.558 5.558 6 C 0.066 3.934 7 C -0.091 4.091 8 H 0.042 0.958 9 C -0.131 4.131 10 C 0.086 3.914 11 N -0.709 5.709 12 C 0.102 3.898 13 C 0.210 3.790 14 H 0.023 0.977 15 C -0.509 4.509 16 H 0.048 0.952 17 C 0.039 3.961 18 N -0.913 5.913 19 Si 0.928 3.072 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.284 1.284 23 H 0.054 0.946 24 H 0.028 0.972 25 H 0.068 0.932 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.032 0.968 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.012 0.988 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.088 0.912 38 H 0.033 0.967 39 H 0.343 0.657 40 H 0.040 0.960 41 H -0.005 1.005 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.613 -0.387 8.073 8.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C -0.200 4.200 4 C -0.038 4.038 5 N -0.282 5.282 6 C -0.061 4.061 7 C -0.110 4.110 8 H 0.061 0.939 9 C -0.189 4.189 10 C -0.042 4.042 11 N -0.341 5.341 12 C -0.030 4.030 13 C 0.102 3.898 14 H 0.041 0.959 15 C -0.548 4.548 16 H 0.066 0.934 17 C -0.161 4.161 18 N -0.552 5.552 19 Si 0.754 3.246 20 H -0.190 1.190 21 H -0.205 1.205 22 H -0.210 1.210 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.051 0.949 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.030 0.970 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.051 0.949 39 H 0.162 0.838 40 H 0.058 0.942 41 H 0.013 0.987 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.292 -0.306 8.093 8.743 hybrid contribution -0.546 -0.775 -1.183 1.516 sum 2.746 -1.081 6.910 7.514 Atomic orbital electron populations 1.21707 0.96115 1.01574 1.00740 1.21376 0.95755 0.96743 1.01169 1.22407 0.98273 0.97067 1.02282 1.21723 0.92455 0.89956 0.99633 1.61296 1.61342 1.02872 1.02695 1.22411 0.96940 0.93790 0.92978 1.20971 0.98146 0.94328 0.97570 0.93932 1.21757 1.01994 1.00925 0.94226 1.21602 0.95696 1.00145 0.86779 1.57656 1.54987 1.17418 1.04016 1.20765 0.97289 0.89330 0.95591 1.19034 0.92107 0.92291 0.86372 0.95905 1.21186 1.00930 1.13137 1.19556 0.93351 1.25357 0.96170 0.96637 0.97953 1.70046 1.08221 1.34310 1.42670 0.85964 0.78469 0.80219 0.79953 1.19027 1.20485 1.21015 0.92696 0.95249 0.91280 0.93432 0.91203 0.94924 0.89559 0.92964 0.91807 0.96997 0.91367 0.91376 0.91337 0.92951 0.89389 0.94893 0.83795 0.94198 0.98680 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.79 9.91 71.98 0.71 -4.08 16 2 C -0.11 -4.03 5.93 30.59 0.18 -3.85 16 3 C -0.16 -6.93 4.50 30.59 0.14 -6.79 16 4 C 0.09 3.82 4.85 86.30 0.42 4.24 16 5 N -0.56 -24.54 4.12 -874.11 -3.60 -28.14 16 6 C 0.07 2.56 4.73 86.31 0.41 2.97 16 7 C -0.09 -3.18 2.25 -11.28 -0.03 -3.21 16 8 H 0.04 1.82 7.23 -2.39 -0.02 1.80 16 9 C -0.13 -3.36 8.85 71.98 0.64 -2.72 16 10 C 0.09 2.85 5.72 85.39 0.49 3.34 16 11 N -0.71 -27.18 6.21 -528.27 -3.28 -30.46 16 12 C 0.10 4.63 5.51 87.95 0.48 5.11 16 13 C 0.21 10.42 1.71 45.01 0.08 10.50 16 14 H 0.02 1.33 5.73 -2.38 -0.01 1.31 16 15 C -0.51 -26.89 5.26 25.60 0.13 -26.76 16 16 H 0.05 2.61 6.90 -2.91 -0.02 2.59 16 17 C 0.04 2.07 3.87 84.66 0.33 2.40 16 18 N -0.91 -51.93 11.96 21.45 0.26 -51.67 16 19 Si 0.93 42.89 29.54 68.60 2.03 44.92 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 23 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 27 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 28 H 0.03 1.39 6.19 -2.39 -0.01 1.37 16 29 H 0.09 4.39 4.05 -2.39 -0.01 4.38 16 30 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.06 2.92 5.92 -2.39 -0.01 2.91 16 32 H 0.01 0.50 5.78 -2.39 -0.01 0.48 16 33 H 0.07 2.33 7.95 -2.39 -0.02 2.31 16 34 H 0.07 1.51 8.11 -2.39 -0.02 1.49 16 35 H 0.07 1.54 8.02 -2.38 -0.02 1.52 16 36 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.09 2.33 7.66 -2.39 -0.02 2.31 16 38 H 0.03 1.15 7.59 -2.38 -0.02 1.13 16 39 H 0.34 11.04 8.86 -89.69 -0.79 10.25 16 40 H 0.04 1.92 7.98 -2.39 -0.02 1.91 16 41 H 0.00 -0.22 8.07 -2.38 -0.02 -0.24 16 42 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -58.68 307.58 -0.43 -59.10 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.18 Total: 25.11 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 3.98 Total: -18.85 kcal Atomic # 7 Polarization: -103.65 SS G_CDS: -6.62 Total: -110.27 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -58.68 -0.43 -59.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249907078.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.429 kcal (2) G-P(sol) polarization free energy of solvation -58.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds