Wall clock time and date at job start Mon Mar 30 2020 04:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46949 * 2 1 4 4 C 1.53006 * 109.47170 * 180.02562 * 3 2 1 5 5 N 1.46893 * 109.47437 * 180.02562 * 4 3 2 6 6 C 1.46957 * 110.99945 * 66.04324 * 5 4 3 7 7 C 1.53050 * 109.36228 * 176.81153 * 6 5 4 8 8 H 1.09005 * 109.49280 * 298.43726 * 7 6 5 9 9 C 1.50707 * 109.48664 * 178.39342 * 7 6 5 10 10 H 1.07994 * 119.99762 * 273.46274 * 9 7 6 11 11 C 1.37872 * 119.99796 * 93.46861 * 9 7 6 12 12 N 1.31517 * 120.00502 * 6.91153 * 11 9 7 13 13 Si 1.86800 * 119.99809 * 186.90946 * 11 9 7 14 14 H 1.48503 * 109.47385 * 89.99720 * 13 11 9 15 15 H 1.48496 * 109.47342 * 210.00042 * 13 11 9 16 16 H 1.48509 * 109.47072 * 330.00025 * 13 11 9 17 17 N 1.46953 * 109.36638 * 58.40447 * 7 6 5 18 18 C 1.46897 * 111.00481 * 176.80960 * 17 7 6 19 19 C 1.46960 * 110.88149 * 300.68066 * 17 7 6 20 20 C 1.46962 * 110.99802 * 302.24897 * 5 4 3 21 21 H 1.08997 * 109.49123 * 63.22137 * 20 5 4 22 22 C 1.52998 * 109.48586 * 303.15126 * 20 5 4 23 23 H 1.09005 * 109.47092 * 59.99839 * 1 2 3 24 24 H 1.09002 * 109.47149 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47191 * 300.00070 * 1 2 3 26 26 H 1.09006 * 109.46965 * 240.00324 * 2 1 3 27 27 H 1.08994 * 109.47296 * 120.00556 * 2 1 3 28 28 H 1.08996 * 109.46982 * 60.00437 * 3 2 1 29 29 H 1.08996 * 109.47318 * 299.99909 * 3 2 1 30 30 H 1.09004 * 109.47127 * 59.99783 * 4 3 2 31 31 H 1.09004 * 109.47237 * 300.00701 * 4 3 2 32 32 H 1.08994 * 109.49241 * 296.77923 * 6 5 4 33 33 H 1.09003 * 109.48910 * 56.82805 * 6 5 4 34 34 H 0.96996 * 120.00191 * 180.02562 * 12 11 9 35 35 H 1.08998 * 109.46900 * 53.83449 * 18 17 7 36 36 H 1.08995 * 109.47367 * 173.83480 * 18 17 7 37 37 H 1.08998 * 109.46705 * 293.83605 * 18 17 7 38 38 H 1.09001 * 109.48879 * 179.28746 * 19 17 7 39 39 H 1.09000 * 109.48328 * 299.32867 * 19 17 7 40 40 H 1.09000 * 109.46965 * 60.00316 * 22 20 5 41 41 H 1.09000 * 109.47390 * 179.97438 * 22 20 5 42 42 H 1.09000 * 109.47668 * 300.00054 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0597 2.8275 0.0000 6 6 3.7105 3.5090 1.2543 7 6 4.3054 4.9191 1.2483 8 1 5.3918 4.8553 1.1857 9 6 3.9159 5.6345 2.5163 10 1 2.9784 6.1679 2.5691 11 6 4.7566 5.6080 3.6087 12 7 5.9551 5.0767 3.5036 13 14 4.1933 6.3269 5.2383 14 1 3.5239 5.2712 6.0401 15 1 5.3687 6.8442 5.9839 16 1 3.2393 7.4367 4.9863 17 7 3.7904 5.6603 0.0886 18 6 4.2800 7.0453 0.0892 19 6 4.1394 4.9789 -1.1658 20 6 3.5445 3.5687 -1.1597 21 1 2.4582 3.6326 -1.0972 22 6 3.9404 2.8423 -2.4467 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.9330 0.9288 -0.8909 31 1 3.9338 0.9285 0.8891 32 1 2.6261 3.5722 1.3442 33 1 4.1133 2.9477 2.0974 34 1 6.5463 5.0577 4.2723 35 1 5.3677 7.0461 0.1589 36 1 3.9748 7.5390 -0.8334 37 1 3.8608 7.5785 0.9425 38 1 3.7363 5.5401 -2.0088 39 1 5.2238 4.9161 -1.2558 40 1 3.5182 1.8373 -2.4412 41 1 3.5578 3.3919 -3.3067 42 1 5.0268 2.7796 -2.5092 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249909360.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:03 Heat of formation + Delta-G solvation = -4.617855 kcal Electronic energy + Delta-G solvation = -18632.657582 eV Core-core repulsion = 16033.069173 eV Total energy + Delta-G solvation = -2599.588409 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.99964 -35.91377 -33.83173 -32.80162 -31.25989 -29.07318 -27.18281 -26.21464 -24.11729 -23.28062 -22.08832 -21.30041 -20.08157 -18.22524 -16.47572 -15.59281 -15.17627 -14.61532 -14.30655 -14.20519 -13.96897 -13.43455 -13.27978 -12.90734 -12.60434 -12.14545 -12.01054 -11.81635 -11.64241 -11.38082 -11.23295 -11.04526 -10.97241 -10.85176 -10.75123 -10.60952 -10.46301 -10.22526 -10.04355 -9.72829 -9.56074 -8.95004 -8.50539 -7.47753 -7.05057 -6.03311 -4.08021 3.29691 3.36795 3.40239 4.39483 4.63109 5.01475 5.06235 5.09342 5.27521 5.32389 5.45117 5.56236 5.72511 5.80676 5.86303 5.86834 5.93444 5.95778 6.04241 6.13350 6.20045 6.26312 6.27983 6.32424 6.38397 6.42709 6.57114 6.58390 6.70319 6.79666 6.86286 6.95911 7.27870 7.64960 7.79548 7.84954 7.95720 8.13275 8.30837 8.68454 9.08717 9.57742 11.03848 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020889 B = 0.007751 C = 0.006320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.128118 B = 3611.383095 C = 4429.402859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.159 4.159 4 C 0.054 3.946 5 N -0.537 5.537 6 C 0.077 3.923 7 C 0.206 3.794 8 H 0.040 0.960 9 C -0.506 4.506 10 H 0.060 0.940 11 C 0.065 3.935 12 N -0.888 5.888 13 Si 0.893 3.107 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.273 1.273 17 N -0.547 5.547 18 C 0.050 3.950 19 C 0.062 3.938 20 C 0.085 3.915 21 H 0.044 0.956 22 C -0.144 4.144 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.024 0.976 33 H 0.068 0.932 34 H 0.262 0.738 35 H 0.015 0.985 36 H 0.036 0.964 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.028 0.972 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.753 -6.372 -8.536 12.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.198 4.198 4 C -0.074 4.074 5 N -0.261 5.261 6 C -0.051 4.051 7 C 0.100 3.900 8 H 0.058 0.942 9 C -0.545 4.545 10 H 0.078 0.922 11 C -0.138 4.138 12 N -0.526 5.526 13 Si 0.720 3.280 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.198 1.198 17 N -0.272 5.272 18 C -0.098 4.098 19 C -0.067 4.067 20 C -0.024 4.024 21 H 0.062 0.938 22 C -0.202 4.202 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.033 0.967 36 H 0.055 0.945 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.554 -6.388 -8.418 11.938 hybrid contribution -0.245 0.308 0.995 1.070 sum -5.799 -6.079 -7.423 11.211 Atomic orbital electron populations 1.21773 0.96318 1.01007 1.01775 1.21447 0.95495 0.97201 1.01564 1.22298 0.98464 0.96538 1.02501 1.22205 0.91909 0.91643 1.01690 1.62536 1.58590 1.01254 1.03674 1.22426 0.97530 0.96430 0.88714 1.19465 0.95336 0.88137 0.87084 0.94200 1.20995 1.04735 1.32796 0.96017 0.92159 1.25008 0.94466 0.95152 0.99141 1.69964 1.06880 1.45353 1.30394 0.86589 0.78207 0.79390 0.83780 1.20606 1.21319 1.19798 1.62330 1.60244 1.02339 1.02306 1.21991 0.97289 0.90496 1.00071 1.22080 0.97726 0.93304 0.93608 1.21559 0.97160 0.93197 0.90488 0.93838 1.21864 1.02003 0.99871 0.96470 0.93007 0.93203 0.92774 0.92440 0.92194 0.91526 0.91983 0.91504 0.91419 0.95741 0.91395 0.92849 0.96687 0.94481 0.90987 0.92395 0.95374 0.92765 0.92899 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 37.16 0.37 -1.29 16 2 C -0.12 -1.42 5.93 -26.73 -0.16 -1.58 16 3 C -0.16 -2.33 4.50 -26.73 -0.12 -2.45 16 4 C 0.05 0.87 4.83 -3.82 -0.02 0.85 16 5 N -0.54 -10.55 4.73 -226.49 -1.07 -11.62 16 6 C 0.08 1.77 4.53 -3.77 -0.02 1.75 16 7 C 0.21 5.26 2.08 -68.81 -0.14 5.12 16 8 H 0.04 1.18 7.27 -51.93 -0.38 0.80 16 9 C -0.51 -13.84 7.07 -34.44 -0.24 -14.08 16 10 H 0.06 1.67 7.80 -52.49 -0.41 1.26 16 11 C 0.07 1.80 5.45 -17.82 -0.10 1.70 16 12 N -0.89 -25.69 12.79 55.43 0.71 -24.98 16 13 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 N -0.55 -12.37 4.78 -236.13 -1.13 -13.50 16 18 C 0.05 1.06 9.19 60.06 0.55 1.61 16 19 C 0.06 1.20 4.89 -3.77 -0.02 1.19 16 20 C 0.08 1.51 2.01 -67.65 -0.14 1.38 16 21 H 0.04 0.81 6.45 -51.93 -0.33 0.47 16 22 C -0.14 -2.05 8.86 37.16 0.33 -1.72 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.11 6.62 -51.93 -0.34 0.76 16 29 H 0.06 0.91 6.44 -51.93 -0.33 0.58 16 30 H 0.07 0.97 6.38 -51.93 -0.33 0.64 16 31 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 32 H 0.02 0.57 6.63 -51.93 -0.34 0.23 16 33 H 0.07 1.70 8.11 -51.93 -0.42 1.27 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.01 0.33 8.12 -51.93 -0.42 -0.09 16 36 H 0.04 0.66 8.03 -51.93 -0.42 0.25 16 37 H 0.07 1.60 7.23 -51.93 -0.38 1.23 16 38 H 0.06 1.00 8.07 -51.93 -0.42 0.58 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.71 6.40 -51.93 -0.33 0.38 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 317.50 15.07 4.78 4.78 Total: -1.00 -28.37 317.50 -9.23 -37.60 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -7.80 Total: -0.98 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 0.30 Total: -7.52 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -1.49 Total: -50.10 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.37 -9.23 -37.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249909360.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.984 kcal (2) G-P(sol) polarization free energy of solvation -28.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds