Wall clock time and date at job start Mon Mar 30 2020 05:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47031 * 2 1 4 4 H 1.09003 * 109.46999 * 56.02271 * 3 2 1 5 5 C 1.50691 * 109.47124 * 296.02526 * 3 2 1 6 6 H 1.08006 * 119.99832 * 275.58422 * 5 3 2 7 7 C 1.37876 * 120.00608 * 95.58884 * 5 3 2 8 8 N 1.31513 * 119.99545 * 7.20884 * 7 5 3 9 9 Si 1.86793 * 120.00504 * 187.21363 * 7 5 3 10 10 H 1.48500 * 109.47338 * 59.99514 * 9 7 5 11 11 H 1.48496 * 109.47334 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47011 * 299.99680 * 9 7 5 13 13 N 1.46898 * 109.46869 * 176.02328 * 3 2 1 14 14 C 1.46954 * 111.00241 * 58.42307 * 13 3 2 15 15 C 1.53050 * 109.36517 * 176.80907 * 14 13 3 16 16 N 1.46960 * 109.36529 * 58.40013 * 15 14 13 17 17 C 1.46898 * 111.00176 * 176.80863 * 16 15 14 18 18 C 1.46954 * 110.88052 * 300.68089 * 16 15 14 19 19 H 1.08994 * 109.49171 * 299.34950 * 18 16 15 20 20 C 1.53003 * 109.48850 * 179.30665 * 18 16 15 21 21 C 1.53003 * 109.47165 * 176.31760 * 20 18 16 22 22 C 1.46960 * 111.00176 * 294.62039 * 13 3 2 23 23 H 1.09006 * 109.47121 * 185.66661 * 1 2 3 24 24 H 1.09000 * 109.47144 * 305.66536 * 1 2 3 25 25 H 1.09001 * 109.47131 * 65.66950 * 1 2 3 26 26 H 1.08994 * 109.47428 * 239.99960 * 2 1 3 27 27 H 1.09000 * 109.47330 * 119.99949 * 2 1 3 28 28 H 0.97003 * 120.00058 * 180.02562 * 8 7 5 29 29 H 1.08994 * 109.48665 * 296.78012 * 14 13 3 30 30 H 1.08996 * 109.48720 * 56.84539 * 14 13 3 31 31 H 1.09000 * 109.49020 * 178.37068 * 15 14 13 32 32 H 1.08999 * 109.48845 * 298.43850 * 15 14 13 33 33 H 1.09007 * 109.46337 * 64.64069 * 17 16 15 34 34 H 1.08996 * 109.46986 * 184.63844 * 17 16 15 35 35 H 1.09001 * 109.47170 * 304.64299 * 17 16 15 36 36 H 1.09000 * 109.47031 * 296.31331 * 20 18 16 37 37 H 1.09001 * 109.47077 * 56.31390 * 20 18 16 38 38 H 1.09005 * 109.46601 * 305.75056 * 21 20 18 39 39 H 1.08997 * 109.47039 * 65.75405 * 21 20 18 40 40 H 1.09000 * 109.46985 * 185.75467 * 21 20 18 41 41 H 1.09000 * 109.49062 * 303.16165 * 22 13 3 42 42 H 1.09000 * 109.48557 * 63.22175 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6196 1.9765 0.8522 5 6 1.6197 2.1239 -1.2767 6 1 2.2166 2.0128 -2.1699 7 6 0.4732 2.8893 -1.3046 8 7 -0.1761 3.1418 -0.1892 9 14 -0.1579 3.5674 -2.9266 10 1 -0.4541 2.4437 -3.8512 11 1 -1.3967 4.3505 -2.6873 12 1 0.8750 4.4466 -3.5311 13 7 3.5058 1.4436 0.0961 14 6 4.1072 0.6988 -1.0189 15 6 5.6322 0.7907 -0.9266 16 7 6.0758 0.2485 0.3653 17 6 7.5416 0.2496 0.4614 18 6 5.4743 0.9933 1.4802 19 1 5.7796 2.0382 1.4262 20 6 5.9430 0.3927 2.8071 21 6 5.3907 1.2241 3.9667 22 6 3.9494 0.9014 1.3879 23 1 -0.3634 -1.0227 0.1015 24 1 -0.3633 0.5992 0.8349 25 1 -0.3633 0.4234 -0.9364 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 -0.9829 3.6800 -0.2088 29 1 3.8019 -0.3461 -0.9648 30 1 3.7737 1.1270 -1.9641 31 1 6.0809 0.2149 -1.7360 32 1 5.9392 1.8334 -1.0080 33 1 7.9057 1.2769 0.4481 34 1 7.8451 -0.2316 1.3911 35 1 7.9615 -0.2957 -0.3839 36 1 5.5808 -0.6321 2.8901 37 1 7.0324 0.3971 2.8433 38 1 5.6680 2.2692 3.8287 39 1 4.3045 1.1365 3.9915 40 1 5.8062 0.8589 4.9058 41 1 3.5007 1.4772 2.1974 42 1 3.6423 -0.1413 1.4694 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251615341.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:14 Heat of formation + Delta-G solvation = 2.424844 kcal Electronic energy + Delta-G solvation = -18789.195390 eV Core-core repulsion = 16189.912376 eV Total energy + Delta-G solvation = -2599.283014 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.17733 -36.11848 -33.55177 -32.70859 -30.99473 -28.97045 -27.86821 -25.76868 -24.14950 -23.37944 -22.41074 -21.14975 -19.73995 -18.51396 -16.24598 -15.67626 -15.04168 -14.72459 -14.42256 -14.09221 -13.73569 -13.47039 -13.33972 -13.02292 -12.77055 -12.27458 -12.05068 -11.76817 -11.61105 -11.40038 -11.16827 -10.90479 -10.84148 -10.65943 -10.55635 -10.43993 -10.30076 -10.25533 -9.90196 -9.60716 -9.25213 -8.86637 -8.36342 -8.01657 -7.00547 -5.98986 -3.98841 3.33528 3.38387 3.41084 4.20883 4.44104 4.92037 5.11225 5.25136 5.32576 5.44642 5.52462 5.58592 5.70714 5.76499 5.79840 5.94616 5.97107 6.01613 6.12775 6.15180 6.27432 6.28767 6.35673 6.40971 6.44058 6.62073 6.66958 6.70483 6.76473 7.00396 7.21756 7.31699 7.38525 7.39839 7.60776 7.64278 7.87530 8.12995 8.46712 8.68312 9.07132 9.62686 11.09887 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028690 B = 0.007069 C = 0.006493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.703300 B = 3960.251182 C = 4311.049353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.139 4.139 3 C 0.203 3.797 4 H 0.071 0.929 5 C -0.497 4.497 6 H 0.055 0.945 7 C 0.070 3.930 8 N -0.889 5.889 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.530 5.530 14 C 0.062 3.938 15 C 0.057 3.943 16 N -0.541 5.541 17 C 0.023 3.977 18 C 0.088 3.912 19 H 0.044 0.956 20 C -0.117 4.117 21 C -0.151 4.151 22 C 0.060 3.940 23 H 0.014 0.986 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.040 0.960 27 H 0.023 0.977 28 H 0.260 0.740 29 H 0.031 0.969 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.036 0.964 33 H 0.020 0.980 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.071 0.929 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.418 -5.121 3.668 12.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.179 4.179 3 C 0.097 3.903 4 H 0.089 0.911 5 C -0.536 4.536 6 H 0.074 0.926 7 C -0.133 4.133 8 N -0.527 5.527 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.254 5.254 14 C -0.067 4.067 15 C -0.071 4.071 16 N -0.266 5.266 17 C -0.125 4.125 18 C -0.021 4.021 19 H 0.062 0.938 20 C -0.155 4.155 21 C -0.209 4.209 22 C -0.069 4.069 23 H 0.033 0.967 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.042 0.958 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.039 0.961 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 10.246 -4.998 3.731 11.995 hybrid contribution -0.372 0.382 -0.922 1.065 sum 9.874 -4.616 2.808 11.256 Atomic orbital electron populations 1.21416 0.96009 0.97146 1.03126 1.22209 0.96740 1.01218 0.97736 1.19598 0.80426 0.90691 0.99587 0.91112 1.20935 1.07598 1.29817 0.95238 0.92641 1.24871 0.97117 0.95320 0.95945 1.69913 1.18304 1.38826 1.25636 0.86741 0.78235 0.79043 0.84458 1.20334 1.21383 1.20330 1.62716 1.11739 1.51336 0.99565 1.22031 0.91278 0.96424 0.96976 1.22242 0.97094 0.97540 0.90186 1.62162 1.06814 1.54654 1.02971 1.22380 0.88580 0.99509 1.02054 1.21757 0.95507 0.95141 0.89670 0.93778 1.21607 1.00066 1.00059 0.93779 1.21786 1.01738 0.99997 0.97384 1.22156 0.92422 0.98049 0.94269 0.96698 0.92794 0.92224 0.94132 0.95801 0.92968 0.95115 0.89801 0.91457 0.94541 0.96110 0.91472 0.91985 0.91522 0.92220 0.92770 0.92100 0.93054 0.91118 0.95004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 8.99 37.16 0.33 -2.36 16 2 C -0.14 -3.15 4.66 -26.73 -0.12 -3.28 16 3 C 0.20 4.99 2.02 -68.87 -0.14 4.85 16 4 H 0.07 1.97 7.17 -51.93 -0.37 1.60 16 5 C -0.50 -13.27 7.49 -34.45 -0.26 -13.53 16 6 H 0.06 1.48 6.09 -52.48 -0.32 1.16 16 7 C 0.07 1.89 4.36 -17.82 -0.08 1.81 16 8 N -0.89 -24.86 12.33 55.43 0.68 -24.17 16 9 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.53 -11.62 4.69 -227.88 -1.07 -12.69 16 14 C 0.06 1.23 4.87 -3.77 -0.02 1.21 16 15 C 0.06 0.97 5.62 -3.77 -0.02 0.94 16 16 N -0.54 -8.57 4.78 -234.73 -1.12 -9.69 16 17 C 0.02 0.29 9.11 60.06 0.55 0.84 16 18 C 0.09 1.42 2.04 -67.66 -0.14 1.28 16 19 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 20 C -0.12 -1.54 5.20 -26.73 -0.14 -1.68 16 21 C -0.15 -1.84 9.49 37.16 0.35 -1.49 16 22 C 0.06 1.14 4.24 -3.77 -0.02 1.12 16 23 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.05 1.28 8.13 -51.93 -0.42 0.86 16 25 H 0.06 1.46 6.89 -51.93 -0.36 1.10 16 26 H 0.04 0.91 6.68 -51.93 -0.35 0.57 16 27 H 0.02 0.51 6.42 -51.93 -0.33 0.17 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.03 0.63 6.55 -51.93 -0.34 0.29 16 30 H 0.08 1.77 6.13 -51.93 -0.32 1.45 16 31 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.76 6.22 -51.93 -0.32 0.44 16 35 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.71 6.17 -51.93 -0.32 0.39 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.79 6.87 -51.93 -0.36 0.43 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 1.36 6.72 -51.93 -0.35 1.01 16 42 H 0.03 0.63 6.52 -51.93 -0.34 0.29 16 LS Contribution 308.88 15.07 4.65 4.65 Total: -1.00 -27.47 308.88 -9.01 -36.47 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.44 Total: -0.38 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 0.30 Total: -10.28 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: -1.51 Total: -46.55 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.47 -9.01 -36.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251615341.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.899 kcal (2) G-P(sol) polarization free energy of solvation -27.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds