Wall clock time and date at job start Mon Mar 30 2020 05:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47031 * 2 1 4 4 H 1.09003 * 109.46999 * 56.02271 * 3 2 1 5 5 C 1.50691 * 109.47124 * 296.02526 * 3 2 1 6 6 H 1.08006 * 119.99832 * 275.58422 * 5 3 2 7 7 C 1.37876 * 120.00608 * 95.58884 * 5 3 2 8 8 N 1.31513 * 119.99545 * 7.20884 * 7 5 3 9 9 Si 1.86793 * 120.00504 * 187.21363 * 7 5 3 10 10 H 1.48500 * 109.47338 * 59.99514 * 9 7 5 11 11 H 1.48496 * 109.47334 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47011 * 299.99680 * 9 7 5 13 13 N 1.46898 * 109.46869 * 176.02328 * 3 2 1 14 14 C 1.46954 * 111.00241 * 58.42307 * 13 3 2 15 15 C 1.53050 * 109.36517 * 176.80907 * 14 13 3 16 16 N 1.46960 * 109.36529 * 58.40013 * 15 14 13 17 17 C 1.46898 * 111.00176 * 176.80863 * 16 15 14 18 18 C 1.46954 * 110.88052 * 300.68089 * 16 15 14 19 19 H 1.08994 * 109.49171 * 299.34950 * 18 16 15 20 20 C 1.53003 * 109.48850 * 179.30665 * 18 16 15 21 21 C 1.53003 * 109.47165 * 176.31760 * 20 18 16 22 22 C 1.46960 * 111.00176 * 294.62039 * 13 3 2 23 23 H 1.09006 * 109.47121 * 185.66661 * 1 2 3 24 24 H 1.09000 * 109.47144 * 305.66536 * 1 2 3 25 25 H 1.09001 * 109.47131 * 65.66950 * 1 2 3 26 26 H 1.08994 * 109.47428 * 239.99960 * 2 1 3 27 27 H 1.09000 * 109.47330 * 119.99949 * 2 1 3 28 28 H 0.97003 * 120.00058 * 180.02562 * 8 7 5 29 29 H 1.08994 * 109.48665 * 296.78012 * 14 13 3 30 30 H 1.08996 * 109.48720 * 56.84539 * 14 13 3 31 31 H 1.09000 * 109.49020 * 178.37068 * 15 14 13 32 32 H 1.08999 * 109.48845 * 298.43850 * 15 14 13 33 33 H 1.09007 * 109.46337 * 64.64069 * 17 16 15 34 34 H 1.08996 * 109.46986 * 184.63844 * 17 16 15 35 35 H 1.09001 * 109.47170 * 304.64299 * 17 16 15 36 36 H 1.09000 * 109.47031 * 296.31331 * 20 18 16 37 37 H 1.09001 * 109.47077 * 56.31390 * 20 18 16 38 38 H 1.09005 * 109.46601 * 305.75056 * 21 20 18 39 39 H 1.08997 * 109.47039 * 65.75405 * 21 20 18 40 40 H 1.09000 * 109.46985 * 185.75467 * 21 20 18 41 41 H 1.09000 * 109.49062 * 303.16165 * 22 13 3 42 42 H 1.09000 * 109.48557 * 63.22175 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6196 1.9765 0.8522 5 6 1.6197 2.1239 -1.2767 6 1 2.2166 2.0128 -2.1699 7 6 0.4732 2.8893 -1.3046 8 7 -0.1761 3.1418 -0.1892 9 14 -0.1579 3.5674 -2.9266 10 1 -0.4541 2.4437 -3.8512 11 1 -1.3967 4.3505 -2.6873 12 1 0.8750 4.4466 -3.5311 13 7 3.5058 1.4436 0.0961 14 6 4.1072 0.6988 -1.0189 15 6 5.6322 0.7907 -0.9266 16 7 6.0758 0.2485 0.3653 17 6 7.5416 0.2496 0.4614 18 6 5.4743 0.9933 1.4802 19 1 5.7796 2.0382 1.4262 20 6 5.9430 0.3927 2.8071 21 6 5.3907 1.2241 3.9667 22 6 3.9494 0.9014 1.3879 23 1 -0.3634 -1.0227 0.1015 24 1 -0.3633 0.5992 0.8349 25 1 -0.3633 0.4234 -0.9364 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 -0.9829 3.6800 -0.2088 29 1 3.8019 -0.3461 -0.9648 30 1 3.7737 1.1270 -1.9641 31 1 6.0809 0.2149 -1.7360 32 1 5.9392 1.8334 -1.0080 33 1 7.9057 1.2769 0.4481 34 1 7.8451 -0.2316 1.3911 35 1 7.9615 -0.2957 -0.3839 36 1 5.5808 -0.6321 2.8901 37 1 7.0324 0.3971 2.8433 38 1 5.6680 2.2692 3.8287 39 1 4.3045 1.1365 3.9915 40 1 5.8062 0.8589 4.9058 41 1 3.5007 1.4772 2.1974 42 1 3.6423 -0.1413 1.4694 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251615341.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:13 Heat of formation + Delta-G solvation = -15.533930 kcal Electronic energy + Delta-G solvation = -18789.974141 eV Core-core repulsion = 16189.912376 eV Total energy + Delta-G solvation = -2600.061765 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.63386 -37.74808 -34.77602 -34.53446 -32.87345 -30.32266 -29.43602 -27.47098 -25.44757 -25.05811 -23.99073 -22.61673 -21.26470 -20.12150 -18.25030 -17.17301 -16.45038 -16.24692 -16.03251 -15.39815 -15.32330 -15.17017 -14.91177 -14.50996 -14.06004 -13.92739 -13.33349 -13.25156 -12.99930 -12.83474 -12.75144 -12.59802 -12.46502 -12.24283 -12.23106 -12.06051 -11.83998 -11.64043 -11.55648 -11.35649 -10.97037 -10.82747 -10.42374 -9.27288 -8.74437 -8.06491 -6.12079 1.43288 1.43624 1.50727 2.45476 2.98871 3.14001 3.52617 3.91227 4.06524 4.14993 4.34213 4.39364 4.45548 4.48841 4.54133 4.56563 4.60784 4.67891 4.75659 4.80160 4.82816 4.89480 4.98884 5.06531 5.07433 5.13777 5.16656 5.19063 5.29989 5.36165 5.42655 5.47064 5.66886 5.72847 5.78603 6.10334 6.19669 6.20983 6.66535 6.82961 6.98815 7.52352 9.01618 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028690 B = 0.007069 C = 0.006493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.703300 B = 3960.251182 C = 4311.049353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.130 4.130 3 C 0.209 3.791 4 H 0.032 0.968 5 C -0.509 4.509 6 H 0.051 0.949 7 C 0.027 3.973 8 N -0.915 5.915 9 Si 0.943 3.057 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.548 5.548 14 C 0.066 3.934 15 C 0.065 3.935 16 N -0.549 5.549 17 C 0.023 3.977 18 C 0.094 3.906 19 H 0.029 0.971 20 C -0.108 4.108 21 C -0.150 4.150 22 C 0.064 3.936 23 H 0.045 0.955 24 H 0.034 0.966 25 H 0.037 0.963 26 H 0.041 0.959 27 H 0.034 0.966 28 H 0.259 0.741 29 H 0.025 0.975 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.027 0.973 33 H 0.022 0.978 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.045 0.955 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.097 -6.176 3.564 14.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.169 4.169 3 C 0.102 3.898 4 H 0.050 0.950 5 C -0.548 4.548 6 H 0.069 0.931 7 C -0.173 4.173 8 N -0.554 5.554 9 Si 0.770 3.230 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.271 5.271 14 C -0.063 4.063 15 C -0.063 4.063 16 N -0.274 5.274 17 C -0.124 4.124 18 C -0.015 4.015 19 H 0.047 0.953 20 C -0.146 4.146 21 C -0.208 4.208 22 C -0.064 4.064 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 11.948 -6.064 3.625 13.880 hybrid contribution -0.853 0.697 -0.861 1.398 sum 11.095 -5.367 2.765 12.631 Atomic orbital electron populations 1.21296 0.95932 0.98427 1.01062 1.22057 0.96671 1.00011 0.98200 1.19324 0.82199 0.91145 0.97093 0.95009 1.21194 1.07709 1.29993 0.95887 0.93092 1.25514 0.97321 0.95765 0.98655 1.70040 1.18581 1.39555 1.27272 0.85847 0.77603 0.78504 0.81073 1.19642 1.21155 1.20160 1.62572 1.10271 1.52768 1.01528 1.21977 0.93545 0.95397 0.95338 1.22140 0.94682 0.97619 0.91864 1.62176 1.09052 1.54092 1.02041 1.22473 0.86068 1.00105 1.03756 1.21689 0.93266 0.94854 0.91711 0.95253 1.21560 1.01327 0.99732 0.92011 1.21776 1.00871 0.99870 0.98239 1.22145 0.94763 0.97085 0.92440 0.93627 0.94664 0.94395 0.93978 0.94699 0.93143 0.95640 0.91620 0.88965 0.95492 0.95937 0.89728 0.90420 0.91525 0.90031 0.93050 0.93596 0.90694 0.92178 0.95578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.97 8.99 71.98 0.65 -4.32 16 2 C -0.13 -5.90 4.66 30.60 0.14 -5.76 16 3 C 0.21 10.57 2.02 44.17 0.09 10.66 16 4 H 0.03 1.85 7.17 -2.39 -0.02 1.83 16 5 C -0.51 -27.75 7.49 25.60 0.19 -27.56 16 6 H 0.05 2.77 6.09 -2.91 -0.02 2.75 16 7 C 0.03 1.49 4.36 84.65 0.37 1.86 16 8 N -0.92 -52.51 12.33 21.45 0.26 -52.24 16 9 Si 0.94 43.73 29.54 68.60 2.03 45.75 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 13 N -0.55 -24.42 4.69 -874.89 -4.10 -28.52 16 14 C 0.07 2.61 4.87 86.31 0.42 3.03 16 15 C 0.07 2.10 5.62 86.31 0.49 2.58 16 16 N -0.55 -16.16 4.78 -896.55 -4.29 -20.45 16 17 C 0.02 0.51 9.11 127.69 1.16 1.68 16 18 C 0.09 2.91 2.04 44.92 0.09 3.01 16 19 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 20 C -0.11 -2.59 5.20 30.60 0.16 -2.44 16 21 C -0.15 -3.40 9.49 71.98 0.68 -2.72 16 22 C 0.06 2.45 4.24 86.31 0.37 2.82 16 23 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 24 H 0.03 1.70 8.13 -2.39 -0.02 1.68 16 25 H 0.04 1.86 6.89 -2.39 -0.02 1.84 16 26 H 0.04 1.89 6.68 -2.39 -0.02 1.87 16 27 H 0.03 1.49 6.42 -2.39 -0.02 1.47 16 28 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 29 H 0.03 1.03 6.55 -2.39 -0.02 1.01 16 30 H 0.07 2.81 6.13 -2.39 -0.01 2.79 16 31 H 0.09 2.51 8.12 -2.39 -0.02 2.49 16 32 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.02 0.49 8.14 -2.38 -0.02 0.47 16 34 H 0.08 1.57 6.22 -2.39 -0.01 1.55 16 35 H 0.08 1.48 8.12 -2.39 -0.02 1.46 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 1.63 6.17 -2.39 -0.01 1.61 16 38 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.04 1.17 6.87 -2.39 -0.02 1.15 16 40 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.06 2.38 6.72 -2.39 -0.02 2.37 16 42 H 0.03 1.02 6.52 -2.39 -0.02 1.01 16 Total: -1.00 -59.47 308.88 -0.32 -59.79 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.97 Total: 12.82 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 4.81 Total: -17.16 kcal Atomic # 7 Polarization: -93.09 SS G_CDS: -8.12 Total: -101.21 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -59.47 -0.32 -59.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251615341.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.258 kcal (2) G-P(sol) polarization free energy of solvation -59.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds