Wall clock time and date at job start Mon Mar 30 2020 05:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47090 * 2 1 4 4 H 1.08994 * 109.50610 * 305.07978 * 3 2 1 5 5 C 1.53042 * 109.50431 * 65.20045 * 3 2 1 6 6 N 1.46841 * 109.52452 * 179.11770 * 5 3 2 7 7 C 1.46899 * 110.99969 * 174.16152 * 6 5 3 8 8 C 1.52998 * 109.47286 * 190.26012 * 7 6 5 9 9 C 1.52999 * 109.47303 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47525 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99441 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00075 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00481 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99886 * 179.73007 * 12 10 9 15 15 H 1.48502 * 109.46964 * 270.27509 * 14 12 10 16 16 H 1.48505 * 109.47036 * 30.26897 * 14 12 10 17 17 H 1.48490 * 109.47395 * 150.27411 * 14 12 10 18 18 C 1.46841 * 111.19984 * 298.25668 * 6 5 3 19 19 C 1.53033 * 109.52477 * 61.74397 * 18 6 5 20 20 C 1.53121 * 109.27596 * 300.82002 * 19 18 6 21 21 H 1.09005 * 109.52136 * 177.55815 * 20 19 18 22 22 N 1.46895 * 109.52576 * 297.68280 * 20 19 18 23 23 H 1.09004 * 109.46912 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47068 * 299.99533 * 1 2 3 25 25 H 1.08997 * 109.47585 * 59.99834 * 1 2 3 26 26 H 1.09003 * 109.46948 * 240.00120 * 2 1 3 27 27 H 1.09005 * 109.47186 * 120.00654 * 2 1 3 28 28 H 1.09006 * 109.45880 * 59.09989 * 5 3 2 29 29 H 1.09001 * 109.45944 * 299.13427 * 5 3 2 30 30 H 1.09000 * 109.47652 * 70.25431 * 7 6 5 31 31 H 1.09007 * 109.47194 * 310.25880 * 7 6 5 32 32 H 1.08995 * 109.47540 * 59.99837 * 8 7 6 33 33 H 1.09001 * 109.46719 * 299.99637 * 8 7 6 34 34 H 1.09009 * 109.47378 * 59.99763 * 9 8 7 35 35 H 1.08998 * 109.47458 * 300.00225 * 9 8 7 36 36 H 0.97005 * 119.99656 * 359.72741 * 13 12 10 37 37 H 1.09000 * 109.46449 * 181.76042 * 18 6 5 38 38 H 1.09003 * 109.46681 * 301.73862 * 18 6 5 39 39 H 1.08996 * 109.50490 * 60.76065 * 19 18 6 40 40 H 1.09003 * 109.50531 * 180.88134 * 19 18 6 41 41 H 1.00899 * 111.00184 * 300.00173 * 22 20 19 42 42 H 1.00906 * 110.99961 * 63.95242 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6046 1.9824 -0.8408 5 6 1.6398 2.1259 1.3096 6 7 2.1472 3.5038 1.3190 7 6 1.6650 4.2343 2.4988 8 6 1.9953 5.7206 2.3486 9 6 1.4926 6.4815 3.5770 10 6 1.8184 7.9454 3.4294 11 1 2.3324 8.2979 2.5473 12 6 1.4605 8.8347 4.4203 13 7 0.8342 8.4056 5.4942 14 14 1.8711 10.6482 4.2407 15 1 3.2111 10.9124 4.8239 16 1 1.8768 11.0143 2.8015 17 1 0.8522 11.4595 4.9539 18 6 3.6136 3.5302 1.2469 19 6 4.0728 2.8888 -0.0645 20 6 3.5660 1.4451 -0.1257 21 1 3.8539 0.9981 -1.0773 22 7 4.1521 0.6718 0.9771 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5140 0.8900 28 1 2.0641 1.5767 2.1502 29 1 0.5533 2.1384 1.3954 30 1 2.1509 3.8426 3.3924 31 1 0.5858 4.1091 2.5877 32 1 1.5094 6.1123 1.4550 33 1 3.0745 5.8458 2.2598 34 1 1.9782 6.0899 4.4709 35 1 0.4134 6.3563 3.6655 36 1 0.6206 7.4639 5.5873 37 1 3.9608 4.5626 1.2872 38 1 4.0288 2.9744 2.0876 39 1 3.6694 3.4520 -0.9059 40 1 5.1618 2.8944 -0.1107 41 1 5.1593 0.6634 0.9176 42 1 3.8457 1.0269 1.8705 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251693715.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:13 Heat of formation + Delta-G solvation = -31.674198 kcal Electronic energy + Delta-G solvation = -17866.356913 eV Core-core repulsion = 15265.595253 eV Total energy + Delta-G solvation = -2600.761660 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.84101 -35.95113 -33.97809 -33.65135 -31.26665 -29.86926 -28.57747 -26.19836 -24.19902 -23.71382 -22.03832 -21.19876 -19.89862 -18.97401 -16.89233 -16.56033 -15.46268 -15.13709 -14.91947 -14.49032 -14.04362 -13.73732 -13.69095 -13.50387 -13.27042 -12.85391 -12.51994 -12.03549 -11.93682 -11.61984 -11.41951 -11.31197 -11.05723 -10.92776 -10.74754 -10.67542 -10.33196 -10.19593 -10.10909 -9.71613 -9.68015 -8.81233 -8.51044 -8.29855 -8.08460 -6.33810 -4.02289 3.44578 3.48625 3.64470 4.02137 4.45057 4.53637 4.57048 4.77879 4.90077 5.03533 5.17497 5.29740 5.32896 5.36450 5.43479 5.47772 5.57310 5.61817 5.71786 5.78183 5.89201 5.89710 5.96014 5.99853 6.02927 6.12055 6.20692 6.26620 6.38612 6.58374 6.64688 6.98297 7.00269 7.25611 7.31155 7.32871 7.45660 7.58328 8.25972 8.49856 8.91723 9.70063 11.06935 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.040146 B = 0.004313 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.284281 B = 6491.114827 C = 6860.402338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.107 4.107 3 C -0.077 4.077 4 H 0.079 0.921 5 C 0.057 3.943 6 N -0.538 5.538 7 C 0.056 3.944 8 C -0.097 4.097 9 C 0.008 3.992 10 C -0.599 4.599 11 H 0.048 0.952 12 C 0.013 3.987 13 N -0.915 5.915 14 Si 1.071 2.929 15 H -0.288 1.288 16 H -0.289 1.289 17 H -0.284 1.284 18 C 0.052 3.948 19 C -0.152 4.152 20 C 0.093 3.907 21 H 0.078 0.922 22 N -0.843 5.843 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.031 0.969 29 H 0.075 0.925 30 H 0.026 0.974 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.004 0.996 35 H 0.007 0.993 36 H 0.268 0.732 37 H 0.083 0.917 38 H 0.024 0.976 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.337 0.663 42 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.345 -16.263 -11.051 20.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.145 4.145 3 C -0.096 4.096 4 H 0.098 0.902 5 C -0.071 4.071 6 N -0.262 5.262 7 C -0.071 4.071 8 C -0.135 4.135 9 C -0.029 4.029 10 C -0.638 4.638 11 H 0.067 0.933 12 C -0.190 4.190 13 N -0.552 5.552 14 Si 0.900 3.100 15 H -0.215 1.215 16 H -0.215 1.215 17 H -0.210 1.210 18 C -0.076 4.076 19 C -0.191 4.191 20 C -0.018 4.018 21 H 0.096 0.904 22 N -0.373 5.373 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.022 0.978 35 H 0.025 0.975 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.042 0.958 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.149 0.851 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.629 -15.183 -11.021 19.109 hybrid contribution 0.942 -0.930 0.269 1.350 sum 4.570 -16.113 -10.751 19.902 Atomic orbital electron populations 1.21867 0.96413 1.01202 1.01889 1.21392 0.94840 0.95747 1.02502 1.21239 0.94019 0.95934 0.98385 0.90240 1.22186 1.00297 0.88306 0.96318 1.61949 1.08743 1.13589 1.41901 1.22283 0.99749 0.95807 0.89249 1.21513 1.00089 0.91268 1.00628 1.19209 0.95545 0.95701 0.92473 1.22080 1.41509 0.92918 1.07268 0.93337 1.25858 0.94310 1.05974 0.92877 1.70755 1.38226 1.18189 1.28012 0.83515 0.76435 0.74692 0.75380 1.21515 1.21470 1.20990 1.22101 0.88274 1.01417 0.95806 1.22392 0.99962 0.97758 0.99037 1.21505 0.94569 0.90877 0.94890 0.90371 1.59031 1.13294 1.59002 1.05976 0.93097 0.92627 0.92905 0.92278 0.91166 0.95134 0.90639 0.95574 0.91281 0.92445 0.93405 0.97812 0.97511 0.92149 0.89917 0.95760 0.90576 0.91884 0.85083 0.84716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.67 37.16 0.36 -1.08 16 2 C -0.11 -1.04 5.14 -26.73 -0.14 -1.17 16 3 C -0.08 -0.83 2.17 -90.54 -0.20 -1.03 16 4 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 5 C 0.06 0.72 4.24 -3.83 -0.02 0.71 16 6 N -0.54 -8.06 4.65 -234.67 -1.09 -9.15 16 7 C 0.06 0.99 4.96 -3.83 -0.02 0.98 16 8 C -0.10 -2.07 5.09 -26.73 -0.14 -2.21 16 9 C 0.01 0.22 4.28 -27.88 -0.12 0.10 16 10 C -0.60 -17.53 9.11 -34.44 -0.31 -17.84 16 11 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 12 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 13 N -0.92 -28.59 13.65 55.43 0.76 -27.84 16 14 Si 1.07 25.81 29.90 -169.99 -5.08 20.72 16 15 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 C 0.05 0.71 5.06 -3.84 -0.02 0.69 16 19 C -0.15 -1.68 5.76 -26.65 -0.15 -1.83 16 20 C 0.09 0.94 3.19 -67.59 -0.22 0.73 16 21 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 22 N -0.84 -8.07 8.42 -4.56 -0.04 -8.11 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.54 6.59 -51.93 -0.34 0.20 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.73 7.72 -51.93 -0.40 0.33 16 28 H 0.03 0.39 6.64 -51.93 -0.34 0.04 16 29 H 0.08 0.97 6.49 -51.93 -0.34 0.64 16 30 H 0.03 0.47 8.12 -51.93 -0.42 0.04 16 31 H 0.07 1.22 7.98 -51.93 -0.41 0.81 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.05 1.01 6.44 -51.93 -0.33 0.68 16 34 H 0.00 0.10 8.01 -51.92 -0.42 -0.32 16 35 H 0.01 0.18 8.00 -51.93 -0.42 -0.23 16 36 H 0.27 8.34 7.22 -40.82 -0.29 8.05 16 37 H 0.08 1.26 6.22 -51.93 -0.32 0.94 16 38 H 0.02 0.32 6.84 -51.93 -0.35 -0.03 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.34 2.78 9.04 -39.29 -0.36 2.43 16 42 H 0.34 3.53 5.61 -39.29 -0.22 3.31 16 LS Contribution 315.89 15.07 4.76 4.76 Total: -1.00 -30.44 315.89 -9.32 -39.76 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -7.56 Total: 1.53 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -1.07 Total: -21.68 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: -0.37 Total: -45.10 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -5.08 Total: 20.72 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.44 -9.32 -39.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251693715.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.084 kcal (2) G-P(sol) polarization free energy of solvation -30.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds