Wall clock time and date at job start Mon Mar 30 2020 05:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47090 * 2 1 4 4 H 1.08994 * 109.50610 * 305.07978 * 3 2 1 5 5 C 1.53042 * 109.50431 * 65.20045 * 3 2 1 6 6 N 1.46841 * 109.52452 * 179.11770 * 5 3 2 7 7 C 1.46899 * 110.99969 * 174.16152 * 6 5 3 8 8 C 1.52998 * 109.47286 * 190.26012 * 7 6 5 9 9 C 1.52999 * 109.47303 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47525 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99441 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00075 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00481 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99886 * 179.73007 * 12 10 9 15 15 H 1.48502 * 109.46964 * 270.27509 * 14 12 10 16 16 H 1.48505 * 109.47036 * 30.26897 * 14 12 10 17 17 H 1.48490 * 109.47395 * 150.27411 * 14 12 10 18 18 C 1.46841 * 111.19984 * 298.25668 * 6 5 3 19 19 C 1.53033 * 109.52477 * 61.74397 * 18 6 5 20 20 C 1.53121 * 109.27596 * 300.82002 * 19 18 6 21 21 H 1.09005 * 109.52136 * 177.55815 * 20 19 18 22 22 N 1.46895 * 109.52576 * 297.68280 * 20 19 18 23 23 H 1.09004 * 109.46912 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47068 * 299.99533 * 1 2 3 25 25 H 1.08997 * 109.47585 * 59.99834 * 1 2 3 26 26 H 1.09003 * 109.46948 * 240.00120 * 2 1 3 27 27 H 1.09005 * 109.47186 * 120.00654 * 2 1 3 28 28 H 1.09006 * 109.45880 * 59.09989 * 5 3 2 29 29 H 1.09001 * 109.45944 * 299.13427 * 5 3 2 30 30 H 1.09000 * 109.47652 * 70.25431 * 7 6 5 31 31 H 1.09007 * 109.47194 * 310.25880 * 7 6 5 32 32 H 1.08995 * 109.47540 * 59.99837 * 8 7 6 33 33 H 1.09001 * 109.46719 * 299.99637 * 8 7 6 34 34 H 1.09009 * 109.47378 * 59.99763 * 9 8 7 35 35 H 1.08998 * 109.47458 * 300.00225 * 9 8 7 36 36 H 0.97005 * 119.99656 * 359.72741 * 13 12 10 37 37 H 1.09000 * 109.46449 * 181.76042 * 18 6 5 38 38 H 1.09003 * 109.46681 * 301.73862 * 18 6 5 39 39 H 1.08996 * 109.50490 * 60.76065 * 19 18 6 40 40 H 1.09003 * 109.50531 * 180.88134 * 19 18 6 41 41 H 1.00899 * 111.00184 * 300.00173 * 22 20 19 42 42 H 1.00906 * 110.99961 * 63.95242 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6046 1.9824 -0.8408 5 6 1.6398 2.1259 1.3096 6 7 2.1472 3.5038 1.3190 7 6 1.6650 4.2343 2.4988 8 6 1.9953 5.7206 2.3486 9 6 1.4926 6.4815 3.5770 10 6 1.8184 7.9454 3.4294 11 1 2.3324 8.2979 2.5473 12 6 1.4605 8.8347 4.4203 13 7 0.8342 8.4056 5.4942 14 14 1.8711 10.6482 4.2407 15 1 3.2111 10.9124 4.8239 16 1 1.8768 11.0143 2.8015 17 1 0.8522 11.4595 4.9539 18 6 3.6136 3.5302 1.2469 19 6 4.0728 2.8888 -0.0645 20 6 3.5660 1.4451 -0.1257 21 1 3.8539 0.9981 -1.0773 22 7 4.1521 0.6718 0.9771 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5140 0.8900 28 1 2.0641 1.5767 2.1502 29 1 0.5533 2.1384 1.3954 30 1 2.1509 3.8426 3.3924 31 1 0.5858 4.1091 2.5877 32 1 1.5094 6.1123 1.4550 33 1 3.0745 5.8458 2.2598 34 1 1.9782 6.0899 4.4709 35 1 0.4134 6.3563 3.6655 36 1 0.6206 7.4639 5.5873 37 1 3.9608 4.5626 1.2872 38 1 4.0288 2.9744 2.0876 39 1 3.6694 3.4520 -0.9059 40 1 5.1618 2.8944 -0.1107 41 1 5.1593 0.6634 0.9176 42 1 3.8457 1.0269 1.8705 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251693715.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:12 Heat of formation + Delta-G solvation = -51.869089 kcal Electronic energy + Delta-G solvation = -17867.232629 eV Core-core repulsion = 15265.595253 eV Total energy + Delta-G solvation = -2601.637376 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.85358 -37.33327 -35.66529 -34.72863 -33.03593 -30.86078 -29.62149 -27.85998 -25.40226 -25.12867 -23.57746 -22.42610 -21.30041 -19.88653 -18.96210 -17.59649 -16.57388 -16.43624 -16.05605 -15.66032 -15.41425 -15.29645 -15.12541 -14.70983 -14.33872 -14.15066 -13.67890 -13.57380 -13.15158 -12.96036 -12.77934 -12.52756 -12.37198 -12.35188 -11.99621 -11.95100 -11.82123 -11.62293 -11.51725 -11.26387 -11.07366 -10.65462 -10.56385 -9.61767 -9.27805 -8.71726 -6.42054 1.50801 1.60401 1.78582 2.54740 2.83669 3.13499 3.63797 3.65188 3.82974 3.96939 4.04113 4.13782 4.23394 4.28837 4.36414 4.47797 4.50975 4.56281 4.59740 4.66693 4.75354 4.83122 4.88549 4.90663 4.99417 5.05465 5.09541 5.15278 5.19904 5.23344 5.39053 5.45611 5.48935 5.57666 5.94870 6.05949 6.13982 6.18329 6.22076 6.54431 6.55753 7.40185 8.69193 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.040146 B = 0.004313 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.284281 B = 6491.114827 C = 6860.402338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.099 4.099 3 C -0.072 4.072 4 H 0.074 0.926 5 C 0.059 3.941 6 N -0.543 5.543 7 C 0.068 3.932 8 C -0.081 4.081 9 C 0.010 3.990 10 C -0.619 4.619 11 H 0.049 0.951 12 C -0.040 4.040 13 N -0.938 5.938 14 Si 1.121 2.879 15 H -0.271 1.271 16 H -0.269 1.269 17 H -0.281 1.281 18 C 0.050 3.950 19 C -0.144 4.144 20 C 0.099 3.901 21 H 0.092 0.908 22 N -0.841 5.841 23 H 0.060 0.940 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.032 0.968 29 H 0.072 0.928 30 H 0.023 0.977 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.048 0.952 34 H -0.013 1.013 35 H -0.011 1.011 36 H 0.255 0.745 37 H 0.063 0.937 38 H 0.029 0.971 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.346 0.654 42 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.287 -16.824 -12.386 21.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.137 4.137 3 C -0.091 4.091 4 H 0.092 0.908 5 C -0.069 4.069 6 N -0.267 5.267 7 C -0.060 4.060 8 C -0.119 4.119 9 C -0.028 4.028 10 C -0.657 4.657 11 H 0.067 0.933 12 C -0.237 4.237 13 N -0.575 5.575 14 Si 0.942 3.058 15 H -0.197 1.197 16 H -0.194 1.194 17 H -0.206 1.206 18 C -0.078 4.078 19 C -0.184 4.184 20 C -0.013 4.013 21 H 0.110 0.890 22 N -0.371 5.371 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.005 0.995 35 H 0.007 0.993 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.047 0.953 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.160 0.840 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.585 -15.783 -12.376 20.573 hybrid contribution 0.645 -0.807 0.684 1.238 sum 5.229 -16.589 -11.692 20.958 Atomic orbital electron populations 1.21861 0.96147 1.01784 1.01534 1.21319 0.95022 0.94729 1.02625 1.21213 0.94742 0.96356 0.96827 0.90772 1.22231 1.00055 0.86951 0.97655 1.61909 1.09802 1.14952 1.40062 1.21994 0.99709 0.93782 0.90481 1.21266 0.99696 0.93252 0.97721 1.19150 0.94313 0.95345 0.93997 1.22510 1.41355 0.94525 1.07334 0.93291 1.27494 0.93332 1.10692 0.92154 1.70894 1.39938 1.17442 1.29259 0.82893 0.77013 0.69298 0.76614 1.19653 1.19404 1.20630 1.22140 0.87312 1.00668 0.97655 1.22361 1.00949 0.98063 0.97011 1.21477 0.93900 0.90279 0.95672 0.89015 1.59024 1.14085 1.58560 1.05478 0.92083 0.93453 0.92790 0.91363 0.91702 0.94942 0.91007 0.95848 0.91492 0.93195 0.93310 0.99492 0.99279 0.93586 0.91867 0.95287 0.91192 0.90202 0.84013 0.85266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.67 71.98 0.70 -1.93 16 2 C -0.10 -1.71 5.14 30.59 0.16 -1.56 16 3 C -0.07 -1.43 2.17 -10.74 -0.02 -1.46 16 4 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 5 C 0.06 1.43 4.24 86.33 0.37 1.79 16 6 N -0.54 -15.95 4.65 -896.37 -4.17 -20.12 16 7 C 0.07 2.43 4.96 86.30 0.43 2.86 16 8 C -0.08 -3.53 5.09 30.59 0.16 -3.37 16 9 C 0.01 0.51 4.28 29.85 0.13 0.64 16 10 C -0.62 -36.65 9.11 25.60 0.23 -36.41 16 11 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 12 C -0.04 -2.36 5.46 84.65 0.46 -1.90 16 13 N -0.94 -59.51 13.65 21.45 0.29 -59.21 16 14 Si 1.12 51.27 29.90 68.60 2.05 53.33 16 15 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 16 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 18 C 0.05 1.32 5.06 86.33 0.44 1.76 16 19 C -0.14 -2.91 5.76 30.65 0.18 -2.73 16 20 C 0.10 1.76 3.19 45.00 0.14 1.90 16 21 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 22 N -0.84 -14.16 8.42 -168.34 -1.42 -15.58 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.05 0.87 6.59 -2.39 -0.02 0.85 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.22 7.72 -2.38 -0.02 1.20 16 28 H 0.03 0.79 6.64 -2.38 -0.02 0.77 16 29 H 0.07 1.80 6.49 -2.39 -0.02 1.78 16 30 H 0.02 0.84 8.12 -2.39 -0.02 0.82 16 31 H 0.07 2.40 7.98 -2.38 -0.02 2.38 16 32 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.05 2.08 6.44 -2.39 -0.02 2.07 16 34 H -0.01 -0.75 8.01 -2.38 -0.02 -0.77 16 35 H -0.01 -0.63 8.00 -2.39 -0.02 -0.65 16 36 H 0.25 16.37 7.22 -92.70 -0.67 15.70 16 37 H 0.06 1.90 6.22 -2.39 -0.01 1.89 16 38 H 0.03 0.74 6.84 -2.39 -0.02 0.72 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.35 4.82 9.04 -89.69 -0.81 4.01 16 42 H 0.33 6.34 5.61 -89.69 -0.50 5.83 16 Total: -1.00 -65.08 315.89 -0.11 -65.20 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -0.23 Total: 16.79 kcal Atomic # 6 Polarization: -43.76 SS G_CDS: 3.36 Total: -40.40 kcal Atomic # 7 Polarization: -89.61 SS G_CDS: -5.30 Total: -94.91 kcal Atomic # 14 Polarization: 51.27 SS G_CDS: 2.05 Total: 53.33 kcal Total: -65.08 -0.11 -65.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251693715.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.329 kcal (2) G-P(sol) polarization free energy of solvation -65.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds