Wall clock time and date at job start Mon Mar 30 2020 05:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47057 * 2 1 4 4 H 1.09003 * 109.46916 * 182.16539 * 3 2 1 5 5 C 1.50698 * 109.47076 * 62.16851 * 3 2 1 6 6 H 1.08005 * 119.99906 * 240.00301 * 5 3 2 7 7 C 1.37881 * 120.00359 * 59.99602 * 5 3 2 8 8 N 1.31516 * 119.99704 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00110 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47326 * 59.99788 * 9 7 5 11 11 H 1.48502 * 109.46945 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46610 * 299.99621 * 9 7 5 13 13 N 1.46894 * 109.47383 * 302.16464 * 3 2 1 14 14 C 1.46849 * 111.00209 * 301.94963 * 13 3 2 15 15 C 1.53033 * 109.52405 * 174.16120 * 14 13 3 16 16 C 1.53113 * 109.27954 * 59.18172 * 15 14 13 17 17 H 1.09004 * 109.57441 * 182.40846 * 16 15 14 18 18 N 1.46895 * 109.52236 * 62.24956 * 16 15 14 19 19 C 1.53115 * 109.16184 * 302.34408 * 16 15 14 20 20 H 1.09006 * 109.53768 * 297.69919 * 19 16 15 21 21 C 1.52992 * 109.50818 * 177.59750 * 19 16 15 22 22 C 1.53001 * 109.47769 * 175.19719 * 21 19 16 23 23 C 1.46843 * 110.99997 * 177.74149 * 13 3 2 24 24 H 1.09001 * 109.47537 * 184.04015 * 1 2 3 25 25 H 1.09005 * 109.46971 * 304.03795 * 1 2 3 26 26 H 1.09000 * 109.47425 * 64.03319 * 1 2 3 27 27 H 1.09000 * 109.46704 * 240.00479 * 2 1 3 28 28 H 1.09001 * 109.47459 * 120.00631 * 2 1 3 29 29 H 0.96995 * 119.99504 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.46115 * 294.18115 * 14 13 3 31 31 H 1.09003 * 109.45782 * 54.14318 * 14 13 3 32 32 H 1.09003 * 109.50482 * 299.23647 * 15 14 13 33 33 H 1.09005 * 109.53379 * 179.14428 * 15 14 13 34 34 H 1.00896 * 110.99897 * 60.31844 * 18 16 15 35 35 H 1.00899 * 111.00215 * 184.26924 * 18 16 15 36 36 H 1.09004 * 109.47132 * 295.20098 * 21 19 16 37 37 H 1.09004 * 109.47339 * 55.19123 * 21 19 16 38 38 H 1.09002 * 109.46588 * 300.00385 * 22 21 19 39 39 H 1.09005 * 109.46534 * 59.99698 * 22 21 19 40 40 H 1.09001 * 109.47166 * 179.97438 * 22 21 19 41 41 H 1.09001 * 109.46548 * 305.85253 * 23 13 3 42 42 H 1.08996 * 109.46602 * 65.83371 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1293 1.4427 -0.0388 5 6 1.5820 2.1372 1.2564 6 1 0.9581 3.0163 1.1906 7 6 1.9593 1.6504 2.4901 8 7 2.7194 0.5801 2.5702 9 14 1.3910 2.5112 4.0475 10 1 -0.0930 2.5104 4.1002 11 1 1.9294 1.7964 5.2326 12 1 1.8857 3.9114 4.0477 13 7 1.5081 2.1499 -1.1724 14 6 1.8966 1.4733 -2.4164 15 6 1.2077 2.1502 -3.6035 16 6 1.6184 3.6244 -3.6528 17 1 1.0972 4.1215 -4.4710 18 7 3.0689 3.7232 -3.8627 19 6 1.2464 4.2944 -2.3272 20 1 0.1657 4.2558 -2.1899 21 6 1.7073 5.7531 -2.3450 22 6 1.2307 6.4543 -1.0713 23 6 1.9341 3.5552 -1.1770 24 1 -0.3634 -1.0251 0.0724 25 1 -0.3633 0.5753 0.8516 26 1 -0.3634 0.4500 -0.9239 27 1 1.8932 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.9845 0.2375 3.4380 30 1 2.9777 1.5343 -2.5407 31 1 1.5951 0.4268 -2.3699 32 1 0.1264 2.0773 -3.4867 33 1 1.5079 1.6577 -4.5284 34 1 3.3389 3.2878 -4.7319 35 1 3.3745 4.6842 -3.8295 36 1 2.7956 5.7898 -2.3944 37 1 1.2871 6.2564 -3.2158 38 1 0.1424 6.4176 -1.0220 39 1 1.6511 5.9510 -0.2006 40 1 1.5595 7.4935 -1.0839 41 1 1.6599 4.0210 -0.2305 42 1 3.0150 3.6066 -1.3073 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251811891.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:08 Heat of formation + Delta-G solvation = -11.998981 kcal Electronic energy + Delta-G solvation = -19007.173875 eV Core-core repulsion = 16407.265396 eV Total energy + Delta-G solvation = -2599.908478 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.04683 -35.77063 -33.41431 -32.53181 -30.83273 -29.49098 -27.95463 -26.11124 -24.12667 -23.15929 -22.00889 -20.77050 -18.80968 -18.34245 -15.98967 -15.86422 -15.52770 -14.81517 -14.33894 -14.09718 -13.38857 -13.28149 -13.20526 -12.73740 -12.54801 -12.30414 -11.80319 -11.76654 -11.42414 -11.27277 -11.03076 -10.82904 -10.70267 -10.56626 -10.41144 -10.21694 -9.99071 -9.75224 -9.60007 -9.50381 -9.19296 -8.64454 -8.39042 -8.27906 -6.86603 -5.91308 -3.94163 3.36409 3.40965 3.43619 4.47781 4.74691 5.00941 5.10216 5.23741 5.35931 5.41469 5.49918 5.64575 5.82931 5.92225 6.01362 6.14472 6.21100 6.23136 6.30967 6.43467 6.47466 6.49373 6.58077 6.67153 6.73090 6.79986 6.86060 7.00608 7.05177 7.23470 7.39982 7.47778 7.57274 7.65227 7.79040 7.89857 7.93799 8.38412 8.50408 8.79158 9.12212 9.69241 11.15072 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022691 B = 0.008930 C = 0.007093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.683389 B = 3134.892741 C = 3946.364804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.112 4.112 3 C 0.219 3.781 4 H -0.005 1.005 5 C -0.492 4.492 6 H 0.060 0.940 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.530 5.530 14 C 0.060 3.940 15 C -0.106 4.106 16 C 0.097 3.903 17 H 0.022 0.978 18 N -0.840 5.840 19 C -0.081 4.081 20 H 0.073 0.927 21 C -0.117 4.117 22 C -0.153 4.153 23 C 0.080 3.920 24 H 0.013 0.987 25 H 0.058 0.942 26 H 0.040 0.960 27 H 0.013 0.987 28 H 0.090 0.910 29 H 0.259 0.741 30 H 0.031 0.969 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.333 0.667 35 H 0.336 0.664 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.045 0.955 41 H 0.079 0.921 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.844 6.374 -11.059 12.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.150 4.150 3 C 0.113 3.887 4 H 0.012 0.988 5 C -0.531 4.531 6 H 0.078 0.922 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.205 1.205 13 N -0.255 5.255 14 C -0.068 4.068 15 C -0.145 4.145 16 C -0.014 4.014 17 H 0.040 0.960 18 N -0.371 5.371 19 C -0.100 4.100 20 H 0.092 0.908 21 C -0.155 4.155 22 C -0.210 4.210 23 C -0.048 4.048 24 H 0.032 0.968 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.031 0.969 28 H 0.109 0.891 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.097 0.903 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.210 5.802 -10.202 11.943 hybrid contribution 0.369 0.958 -0.069 1.029 sum -1.841 6.760 -10.271 12.433 Atomic orbital electron populations 1.21457 0.97436 0.97361 1.01431 1.21572 0.94999 0.98468 0.99942 1.19175 0.92341 0.90586 0.86564 0.98772 1.21051 1.30594 1.11694 0.89775 0.92175 1.24898 0.95338 0.95124 0.98816 1.69874 1.36444 1.22620 1.24337 0.86683 0.79011 0.79584 0.82844 1.20326 1.21498 1.20469 1.61996 1.60201 1.01357 1.01925 1.21888 0.97288 0.97551 0.90095 1.21597 1.00629 0.94236 0.98016 1.21369 0.87499 0.96420 0.96078 0.96029 1.58709 1.14434 1.22370 1.41555 1.21319 1.00569 0.93254 0.94882 0.90845 1.21524 1.00769 0.95568 0.97654 1.21798 1.01182 0.99390 0.98622 1.21841 0.96540 0.89643 0.96815 0.96784 0.92340 0.94117 0.96885 0.89147 0.93102 0.95075 0.91792 0.91501 0.93079 0.85516 0.85054 0.91987 0.93207 0.92926 0.91629 0.93555 0.90289 0.95299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 9.52 37.16 0.35 -2.33 16 2 C -0.11 -2.73 5.02 -26.73 -0.13 -2.86 16 3 C 0.22 5.56 1.76 -68.87 -0.12 5.43 16 4 H -0.01 -0.15 8.14 -51.93 -0.42 -0.58 16 5 C -0.49 -13.30 6.63 -34.44 -0.23 -13.53 16 6 H 0.06 1.63 6.54 -52.48 -0.34 1.29 16 7 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 8 N -0.89 -25.58 11.31 55.43 0.63 -24.95 16 9 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.53 -11.38 3.74 -228.09 -0.85 -12.24 16 14 C 0.06 1.15 5.01 -3.83 -0.02 1.13 16 15 C -0.11 -1.64 5.76 -26.66 -0.15 -1.79 16 16 C 0.10 1.38 3.14 -67.60 -0.21 1.17 16 17 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 18 N -0.84 -11.00 7.89 -4.57 -0.04 -11.03 16 19 C -0.08 -1.27 2.18 -90.54 -0.20 -1.47 16 20 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 21 C -0.12 -1.55 4.87 -26.73 -0.13 -1.68 16 22 C -0.15 -2.05 9.67 37.16 0.36 -1.69 16 23 C 0.08 1.58 4.10 -3.83 -0.02 1.57 16 24 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.06 1.42 7.15 -51.93 -0.37 1.05 16 26 H 0.04 0.86 7.66 -51.93 -0.40 0.47 16 27 H 0.01 0.29 6.37 -51.93 -0.33 -0.04 16 28 H 0.09 2.46 6.02 -51.93 -0.31 2.15 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.03 0.63 7.68 -51.93 -0.40 0.23 16 31 H 0.06 1.25 6.00 -51.93 -0.31 0.94 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.33 3.74 9.04 -39.29 -0.36 3.39 16 35 H 0.34 3.94 7.08 -39.29 -0.28 3.66 16 36 H 0.06 0.81 6.81 -51.93 -0.35 0.46 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 1.01 6.59 -51.93 -0.34 0.66 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 1.72 4.61 -51.93 -0.24 1.48 16 42 H 0.03 0.62 7.68 -51.93 -0.40 0.22 16 LS Contribution 307.58 15.07 4.64 4.64 Total: -1.00 -27.99 307.58 -8.61 -36.61 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -7.37 Total: 5.09 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -0.59 Total: -14.52 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.26 Total: -48.22 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.99 -8.61 -36.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251811891.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.606 kcal (2) G-P(sol) polarization free energy of solvation -27.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds