Wall clock time and date at job start Mon Mar 30 2020 05:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47057 * 2 1 4 4 H 1.09003 * 109.46916 * 182.16539 * 3 2 1 5 5 C 1.50698 * 109.47076 * 62.16851 * 3 2 1 6 6 H 1.08005 * 119.99906 * 240.00301 * 5 3 2 7 7 C 1.37881 * 120.00359 * 59.99602 * 5 3 2 8 8 N 1.31516 * 119.99704 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00110 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47326 * 59.99788 * 9 7 5 11 11 H 1.48502 * 109.46945 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46610 * 299.99621 * 9 7 5 13 13 N 1.46894 * 109.47383 * 302.16464 * 3 2 1 14 14 C 1.46849 * 111.00209 * 301.94963 * 13 3 2 15 15 C 1.53033 * 109.52405 * 174.16120 * 14 13 3 16 16 C 1.53113 * 109.27954 * 59.18172 * 15 14 13 17 17 H 1.09004 * 109.57441 * 182.40846 * 16 15 14 18 18 N 1.46895 * 109.52236 * 62.24956 * 16 15 14 19 19 C 1.53115 * 109.16184 * 302.34408 * 16 15 14 20 20 H 1.09006 * 109.53768 * 297.69919 * 19 16 15 21 21 C 1.52992 * 109.50818 * 177.59750 * 19 16 15 22 22 C 1.53001 * 109.47769 * 175.19719 * 21 19 16 23 23 C 1.46843 * 110.99997 * 177.74149 * 13 3 2 24 24 H 1.09001 * 109.47537 * 184.04015 * 1 2 3 25 25 H 1.09005 * 109.46971 * 304.03795 * 1 2 3 26 26 H 1.09000 * 109.47425 * 64.03319 * 1 2 3 27 27 H 1.09000 * 109.46704 * 240.00479 * 2 1 3 28 28 H 1.09001 * 109.47459 * 120.00631 * 2 1 3 29 29 H 0.96995 * 119.99504 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.46115 * 294.18115 * 14 13 3 31 31 H 1.09003 * 109.45782 * 54.14318 * 14 13 3 32 32 H 1.09003 * 109.50482 * 299.23647 * 15 14 13 33 33 H 1.09005 * 109.53379 * 179.14428 * 15 14 13 34 34 H 1.00896 * 110.99897 * 60.31844 * 18 16 15 35 35 H 1.00899 * 111.00215 * 184.26924 * 18 16 15 36 36 H 1.09004 * 109.47132 * 295.20098 * 21 19 16 37 37 H 1.09004 * 109.47339 * 55.19123 * 21 19 16 38 38 H 1.09002 * 109.46588 * 300.00385 * 22 21 19 39 39 H 1.09005 * 109.46534 * 59.99698 * 22 21 19 40 40 H 1.09001 * 109.47166 * 179.97438 * 22 21 19 41 41 H 1.09001 * 109.46548 * 305.85253 * 23 13 3 42 42 H 1.08996 * 109.46602 * 65.83371 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1293 1.4427 -0.0388 5 6 1.5820 2.1372 1.2564 6 1 0.9581 3.0163 1.1906 7 6 1.9593 1.6504 2.4901 8 7 2.7194 0.5801 2.5702 9 14 1.3910 2.5112 4.0475 10 1 -0.0930 2.5104 4.1002 11 1 1.9294 1.7964 5.2326 12 1 1.8857 3.9114 4.0477 13 7 1.5081 2.1499 -1.1724 14 6 1.8966 1.4733 -2.4164 15 6 1.2077 2.1502 -3.6035 16 6 1.6184 3.6244 -3.6528 17 1 1.0972 4.1215 -4.4710 18 7 3.0689 3.7232 -3.8627 19 6 1.2464 4.2944 -2.3272 20 1 0.1657 4.2558 -2.1899 21 6 1.7073 5.7531 -2.3450 22 6 1.2307 6.4543 -1.0713 23 6 1.9341 3.5552 -1.1770 24 1 -0.3634 -1.0251 0.0724 25 1 -0.3633 0.5753 0.8516 26 1 -0.3634 0.4500 -0.9239 27 1 1.8932 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.9845 0.2375 3.4380 30 1 2.9777 1.5343 -2.5407 31 1 1.5951 0.4268 -2.3699 32 1 0.1264 2.0773 -3.4867 33 1 1.5079 1.6577 -4.5284 34 1 3.3389 3.2878 -4.7319 35 1 3.3745 4.6842 -3.8295 36 1 2.7956 5.7898 -2.3944 37 1 1.2871 6.2564 -3.2158 38 1 0.1424 6.4176 -1.0220 39 1 1.6511 5.9510 -0.2006 40 1 1.5595 7.4935 -1.0839 41 1 1.6599 4.0210 -0.2305 42 1 3.0150 3.6066 -1.3073 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251811891.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:08 Heat of formation + Delta-G solvation = -30.194704 kcal Electronic energy + Delta-G solvation = -19007.962900 eV Core-core repulsion = 16407.265396 eV Total energy + Delta-G solvation = -2600.697504 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.48935 -37.45042 -34.77469 -34.20268 -32.71343 -30.89940 -29.27744 -28.04974 -25.78316 -24.66956 -23.68541 -22.11952 -20.57507 -19.72573 -18.06876 -17.34689 -16.88353 -16.24537 -16.05233 -15.47029 -15.10446 -14.78557 -14.58723 -14.45458 -13.92926 -13.71846 -13.56900 -13.32282 -12.85328 -12.80072 -12.66083 -12.52590 -12.39789 -12.17162 -12.04381 -11.72201 -11.64080 -11.44558 -11.34445 -11.12107 -10.82509 -10.60687 -10.37179 -9.44295 -8.65761 -8.04439 -6.13985 1.42097 1.43407 1.50613 2.44901 3.22819 3.46484 3.77249 3.89614 3.99212 4.17536 4.34677 4.46919 4.59423 4.63413 4.64415 4.73984 4.78742 4.87397 4.88782 4.93645 5.02368 5.11085 5.15061 5.17989 5.24854 5.30420 5.33576 5.38684 5.49170 5.50726 5.59229 5.65521 5.77514 5.84864 5.94835 6.37421 6.40993 6.58116 6.75384 6.92754 7.02008 7.53483 9.01036 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022691 B = 0.008930 C = 0.007093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.683389 B = 3134.892741 C = 3946.364804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.107 4.107 3 C 0.226 3.774 4 H -0.055 1.055 5 C -0.499 4.499 6 H 0.055 0.945 7 C 0.012 3.988 8 N -0.921 5.921 9 Si 0.950 3.050 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.530 5.530 14 C 0.061 3.939 15 C -0.101 4.101 16 C 0.103 3.897 17 H 0.051 0.949 18 N -0.853 5.853 19 C -0.075 4.075 20 H 0.068 0.932 21 C -0.110 4.110 22 C -0.153 4.153 23 C 0.087 3.913 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.052 0.948 27 H 0.024 0.976 28 H 0.060 0.940 29 H 0.259 0.741 30 H 0.014 0.986 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.346 0.654 35 H 0.345 0.655 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.036 0.964 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.067 7.610 -12.767 15.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.145 4.145 3 C 0.119 3.881 4 H -0.038 1.038 5 C -0.537 4.537 6 H 0.073 0.927 7 C -0.186 4.186 8 N -0.561 5.561 9 Si 0.776 3.224 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.254 5.254 14 C -0.067 4.067 15 C -0.139 4.139 16 C -0.009 4.009 17 H 0.069 0.931 18 N -0.387 5.387 19 C -0.094 4.094 20 H 0.086 0.914 21 C -0.148 4.148 22 C -0.210 4.210 23 C -0.042 4.042 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.055 0.945 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -3.436 7.052 -11.935 14.282 hybrid contribution 0.804 0.560 0.438 1.073 sum -2.632 7.612 -11.497 14.038 Atomic orbital electron populations 1.21295 0.95546 0.98449 1.00959 1.21439 0.96523 0.97577 0.98997 1.18957 0.89409 0.91711 0.88048 1.03769 1.21236 1.30234 1.11488 0.90768 0.92724 1.25633 0.95486 0.95762 1.01760 1.70020 1.37450 1.23834 1.24846 0.85729 0.78776 0.78632 0.79230 1.19612 1.21193 1.19934 1.62001 1.59569 1.02086 1.01746 1.21928 0.96783 0.97538 0.90441 1.21575 1.00274 0.95076 0.96973 1.21285 0.88406 0.95426 0.95739 0.93116 1.58628 1.13941 1.23380 1.42709 1.21260 0.99649 0.94538 0.93989 0.91358 1.21480 1.00933 0.93834 0.98534 1.21790 1.01204 1.00335 0.97675 1.21766 0.95667 0.88991 0.97735 0.94609 0.94581 0.92891 0.95700 0.92173 0.93225 0.96731 0.92509 0.91266 0.90507 0.84064 0.84020 0.91914 0.90331 0.92700 0.94512 0.91516 0.92938 0.97430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.68 9.52 71.98 0.69 -4.00 16 2 C -0.11 -5.35 5.02 30.59 0.15 -5.19 16 3 C 0.23 11.89 1.76 44.17 0.08 11.97 16 4 H -0.06 -3.37 8.14 -2.39 -0.02 -3.39 16 5 C -0.50 -27.81 6.63 25.60 0.17 -27.65 16 6 H 0.05 3.05 6.54 -2.91 -0.02 3.03 16 7 C 0.01 0.66 5.30 84.66 0.45 1.11 16 8 N -0.92 -54.45 11.31 21.45 0.24 -54.21 16 9 Si 0.95 44.69 29.54 68.60 2.03 46.71 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 13 N -0.53 -23.10 3.74 -875.54 -3.27 -26.37 16 14 C 0.06 2.31 5.01 86.32 0.43 2.74 16 15 C -0.10 -2.83 5.76 30.64 0.18 -2.66 16 16 C 0.10 2.59 3.14 44.99 0.14 2.73 16 17 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 18 N -0.85 -20.33 7.89 -168.36 -1.33 -21.66 16 19 C -0.08 -2.23 2.18 -10.74 -0.02 -2.26 16 20 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 21 C -0.11 -2.64 4.87 30.59 0.15 -2.49 16 22 C -0.15 -3.90 9.67 71.98 0.70 -3.21 16 23 C 0.09 3.50 4.10 86.33 0.35 3.85 16 24 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.04 1.74 7.15 -2.38 -0.02 1.72 16 26 H 0.05 2.19 7.66 -2.39 -0.02 2.18 16 27 H 0.02 1.15 6.37 -2.39 -0.02 1.13 16 28 H 0.06 3.39 6.02 -2.39 -0.01 3.37 16 29 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 30 H 0.01 0.59 7.68 -2.39 -0.02 0.57 16 31 H 0.06 2.19 6.00 -2.39 -0.01 2.17 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.35 6.77 9.04 -89.70 -0.81 5.96 16 35 H 0.35 7.20 7.08 -89.69 -0.63 6.56 16 36 H 0.06 1.52 6.81 -2.38 -0.02 1.50 16 37 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.04 1.13 6.59 -2.38 -0.02 1.12 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.05 2.37 4.61 -2.39 -0.01 2.36 16 42 H 0.01 0.33 7.68 -2.39 -0.02 0.31 16 Total: -1.00 -62.43 307.58 0.68 -61.74 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -0.45 Total: 18.83 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: 3.46 Total: -25.05 kcal Atomic # 7 Polarization: -97.88 SS G_CDS: -4.36 Total: -102.24 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -62.43 0.68 -61.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251811891.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.550 kcal (2) G-P(sol) polarization free energy of solvation -62.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds