Wall clock time and date at job start Mon Mar 30 2020 05:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47321 * 2 1 4 4 H 1.08995 * 109.50597 * 305.05271 * 3 2 1 5 5 C 1.53050 * 109.49197 * 184.99474 * 3 2 1 6 6 N 1.46956 * 109.38444 * 298.44870 * 5 3 2 7 7 C 1.46902 * 111.00136 * 176.79630 * 6 5 3 8 8 H 1.09001 * 109.46943 * 176.89171 * 7 6 5 9 9 C 1.53009 * 109.46743 * 56.89793 * 7 6 5 10 10 C 1.50698 * 109.47047 * 296.89923 * 7 6 5 11 11 H 1.08001 * 120.00114 * 359.97438 * 10 7 6 12 12 C 1.37876 * 119.99845 * 179.97438 * 10 7 6 13 13 N 1.31521 * 120.00150 * 0.02562 * 12 10 7 14 14 Si 1.86799 * 120.00154 * 179.97438 * 12 10 7 15 15 H 1.48503 * 109.46853 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46709 * 120.00184 * 14 12 10 17 17 H 1.48490 * 109.47335 * 240.00280 * 14 12 10 18 18 C 1.46954 * 110.87830 * 300.66397 * 6 5 3 19 19 H 1.09007 * 109.49136 * 299.35832 * 18 6 5 20 20 C 1.53003 * 109.49255 * 179.30876 * 18 6 5 21 21 C 1.52998 * 109.47186 * 177.00148 * 20 18 6 22 22 C 1.53055 * 109.36542 * 59.31902 * 18 6 5 23 23 N 1.46958 * 109.36586 * 301.60368 * 22 18 6 24 24 H 1.08997 * 109.47227 * 300.00327 * 1 2 3 25 25 H 1.09002 * 109.46928 * 60.00201 * 1 2 3 26 26 H 1.09006 * 109.47302 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47227 * 239.99673 * 2 1 3 28 28 H 1.09002 * 109.46928 * 119.99799 * 2 1 3 29 29 H 1.08997 * 109.49028 * 178.46309 * 5 3 2 30 30 H 1.09004 * 109.48638 * 58.42235 * 5 3 2 31 31 H 1.09005 * 109.46704 * 179.97438 * 9 7 6 32 32 H 1.08996 * 109.46953 * 299.99868 * 9 7 6 33 33 H 1.09003 * 109.47097 * 59.99807 * 9 7 6 34 34 H 0.96993 * 120.00221 * 180.02562 * 13 12 10 35 35 H 1.08994 * 109.46828 * 297.00392 * 20 18 6 36 36 H 1.08998 * 109.46507 * 57.00247 * 20 18 6 37 37 H 1.08996 * 109.47191 * 65.88804 * 21 20 18 38 38 H 1.09003 * 109.46641 * 185.89349 * 21 20 18 39 39 H 1.09008 * 109.46913 * 305.88830 * 21 20 18 40 40 H 1.08997 * 109.48588 * 61.56975 * 22 18 6 41 41 H 1.09003 * 109.49111 * 181.63048 * 22 18 6 42 42 H 1.00903 * 110.99365 * 295.44976 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6050 1.9822 -0.8411 5 6 3.5653 1.4447 -0.1256 6 7 4.1509 0.7500 1.0294 7 6 5.6123 0.6648 0.9071 8 1 6.0249 0.1956 1.8002 9 6 6.1942 2.0717 0.7550 10 6 5.9679 -0.1594 -0.3034 11 1 5.1864 -0.5784 -0.9200 12 6 7.2909 -0.3786 -0.6238 13 7 8.2426 0.1312 0.1272 14 14 7.7316 -1.4008 -2.1239 15 1 6.4878 -1.8566 -2.7951 16 1 8.5294 -0.5769 -3.0672 17 1 8.5279 -2.5810 -1.7020 18 6 3.7650 1.4065 2.2862 19 1 4.1283 2.4342 2.2862 20 6 4.3764 0.6489 3.4666 21 6 4.0367 1.3751 4.7697 22 6 2.2397 1.4043 2.4125 23 7 1.6541 2.0989 1.2574 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.9264 2.4728 -0.1531 30 1 3.8554 0.9328 -1.0432 31 1 7.2787 2.0085 0.6647 32 1 5.7816 2.5409 -0.1381 33 1 5.9370 2.6679 1.6305 34 1 9.1733 -0.0226 -0.0984 35 1 3.9715 -0.3625 3.4980 36 1 5.4589 0.6034 3.3475 37 1 2.9613 1.3294 4.9414 38 1 4.5578 0.8963 5.5988 39 1 4.3492 2.4169 4.6972 40 1 1.8786 0.3762 2.4400 41 1 1.9500 1.9164 3.3301 42 1 1.9151 3.0736 1.2513 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251854554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:55 Heat of formation + Delta-G solvation = -3.057617 kcal Electronic energy + Delta-G solvation = -19075.192236 eV Core-core repulsion = 16475.671484 eV Total energy + Delta-G solvation = -2599.520752 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.47704 -35.48044 -34.04027 -32.07125 -31.51698 -28.67305 -28.22530 -25.29442 -24.48316 -23.94242 -22.48390 -20.76862 -19.61466 -18.35944 -16.29595 -15.93151 -15.16823 -14.68848 -14.47496 -13.98557 -13.64301 -13.35585 -13.02649 -12.86047 -12.54045 -12.27142 -11.96526 -11.74468 -11.59344 -11.39506 -11.03236 -10.93486 -10.75073 -10.66751 -10.49103 -10.34404 -10.33408 -10.22639 -9.99180 -9.88923 -9.78022 -8.81086 -8.37588 -7.89554 -7.08363 -6.01631 -4.04675 3.28736 3.36925 3.41255 4.39969 4.62140 4.83233 5.28545 5.35322 5.40064 5.46398 5.59373 5.61719 5.69024 5.75483 5.86220 5.91788 6.06631 6.12223 6.12265 6.24310 6.27682 6.37121 6.43148 6.52828 6.59635 6.66503 6.72170 6.75580 6.82686 6.84594 6.89245 7.14930 7.37347 7.52755 7.69372 7.73337 7.84426 8.15802 8.38537 8.61717 9.01712 9.60267 11.05479 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021534 B = 0.008856 C = 0.006997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.974927 B = 3160.927666 C = 4001.000507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 C 0.086 3.914 4 H 0.072 0.928 5 C 0.032 3.968 6 N -0.518 5.518 7 C 0.207 3.793 8 H 0.047 0.953 9 C -0.171 4.171 10 C -0.496 4.496 11 H 0.062 0.938 12 C 0.057 3.943 13 N -0.895 5.895 14 Si 0.894 3.106 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.285 1.285 18 C 0.048 3.952 19 H 0.029 0.971 20 C -0.117 4.117 21 C -0.148 4.148 22 C 0.062 3.938 23 N -0.682 5.682 24 H 0.059 0.941 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.022 0.978 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.027 0.973 33 H 0.005 0.995 34 H 0.259 0.741 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.048 0.952 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.561 2.987 3.719 11.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.143 4.143 3 C -0.024 4.024 4 H 0.090 0.910 5 C -0.098 4.098 6 N -0.242 5.242 7 C 0.101 3.899 8 H 0.064 0.936 9 C -0.230 4.230 10 C -0.535 4.535 11 H 0.080 0.920 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.722 3.278 15 H -0.198 1.198 16 H -0.213 1.213 17 H -0.211 1.211 18 C -0.063 4.063 19 H 0.046 0.954 20 C -0.155 4.155 21 C -0.206 4.206 22 C -0.068 4.068 23 N -0.310 5.310 24 H 0.078 0.922 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.040 0.960 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.046 0.954 33 H 0.024 0.976 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.187 2.168 3.769 12.002 hybrid contribution 1.850 0.695 -0.952 2.193 sum -9.337 2.862 2.816 10.164 Atomic orbital electron populations 1.21701 0.96621 1.00087 1.01579 1.21423 0.94540 0.95440 1.02934 1.21738 0.93585 0.95727 0.91384 0.90954 1.22675 0.93715 0.96712 0.96729 1.62450 1.13583 1.49186 0.99021 1.19377 0.80364 0.92182 0.97951 0.93558 1.22386 1.05391 0.98868 0.96364 1.21151 0.91555 1.30749 1.10003 0.92019 1.24924 0.96481 0.96066 0.96879 1.69893 0.99707 1.45315 1.38557 0.86499 0.78405 0.80016 0.82847 1.19752 1.21264 1.21098 1.22287 0.95913 0.95932 0.92126 0.95354 1.21558 1.01939 0.99249 0.92746 1.21793 1.00854 1.00265 0.97672 1.22200 0.91743 1.00138 0.92700 1.60871 1.61678 1.05703 1.02739 0.92158 0.93868 0.94040 0.92192 0.90596 0.96001 0.89695 0.89465 0.95410 0.97593 0.93130 0.91632 0.90949 0.93011 0.93106 0.93323 0.90223 0.91473 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.80 37.16 0.36 -1.52 16 2 C -0.11 -1.64 5.00 -26.74 -0.13 -1.78 16 3 C 0.09 1.35 3.09 -67.64 -0.21 1.14 16 4 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 5 C 0.03 0.60 4.25 -3.77 -0.02 0.59 16 6 N -0.52 -10.62 3.90 -219.93 -0.86 -11.48 16 7 C 0.21 5.06 2.05 -68.86 -0.14 4.92 16 8 H 0.05 1.24 5.81 -51.93 -0.30 0.94 16 9 C -0.17 -4.13 8.25 37.16 0.31 -3.82 16 10 C -0.50 -13.34 7.90 -34.44 -0.27 -13.61 16 11 H 0.06 1.68 6.91 -52.49 -0.36 1.31 16 12 C 0.06 1.56 5.30 -17.82 -0.09 1.47 16 13 N -0.90 -25.35 11.32 55.43 0.63 -24.72 16 14 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 15 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 C 0.05 0.84 1.72 -67.65 -0.12 0.73 16 19 H 0.03 0.54 6.65 -51.93 -0.35 0.19 16 20 C -0.12 -1.97 5.21 -26.73 -0.14 -2.11 16 21 C -0.15 -1.99 9.47 37.16 0.35 -1.64 16 22 C 0.06 0.93 5.30 -3.76 -0.02 0.91 16 23 N -0.68 -9.93 6.16 -106.56 -0.66 -10.58 16 24 H 0.06 0.81 7.76 -51.93 -0.40 0.41 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.08 1.30 5.83 -51.93 -0.30 1.00 16 29 H 0.02 0.44 6.44 -51.93 -0.33 0.10 16 30 H 0.08 1.80 6.58 -51.93 -0.34 1.46 16 31 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 32 H 0.03 0.65 6.43 -51.93 -0.33 0.32 16 33 H 0.01 0.12 6.65 -51.93 -0.35 -0.23 16 34 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.42 6.04 -51.93 -0.31 1.10 16 37 H 0.05 0.62 6.86 -51.93 -0.36 0.26 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 40 H 0.08 1.26 6.24 -51.93 -0.32 0.93 16 41 H 0.07 0.90 6.73 -51.93 -0.35 0.55 16 42 H 0.33 4.59 8.89 -39.29 -0.35 4.24 16 LS Contribution 304.77 15.07 4.59 4.59 Total: -1.00 -27.02 304.77 -8.61 -35.63 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.17 Total: 4.99 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -0.12 Total: -14.73 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: -0.89 Total: -46.78 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.02 -8.61 -35.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251854554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.570 kcal (2) G-P(sol) polarization free energy of solvation -27.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds