Wall clock time and date at job start Mon Mar 30 2020 05:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47321 * 2 1 4 4 H 1.08995 * 109.50597 * 305.05271 * 3 2 1 5 5 C 1.53050 * 109.49197 * 184.99474 * 3 2 1 6 6 N 1.46956 * 109.38444 * 298.44870 * 5 3 2 7 7 C 1.46902 * 111.00136 * 176.79630 * 6 5 3 8 8 H 1.09001 * 109.46943 * 176.89171 * 7 6 5 9 9 C 1.53009 * 109.46743 * 56.89793 * 7 6 5 10 10 C 1.50698 * 109.47047 * 296.89923 * 7 6 5 11 11 H 1.08001 * 120.00114 * 359.97438 * 10 7 6 12 12 C 1.37876 * 119.99845 * 179.97438 * 10 7 6 13 13 N 1.31521 * 120.00150 * 0.02562 * 12 10 7 14 14 Si 1.86799 * 120.00154 * 179.97438 * 12 10 7 15 15 H 1.48503 * 109.46853 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46709 * 120.00184 * 14 12 10 17 17 H 1.48490 * 109.47335 * 240.00280 * 14 12 10 18 18 C 1.46954 * 110.87830 * 300.66397 * 6 5 3 19 19 H 1.09007 * 109.49136 * 299.35832 * 18 6 5 20 20 C 1.53003 * 109.49255 * 179.30876 * 18 6 5 21 21 C 1.52998 * 109.47186 * 177.00148 * 20 18 6 22 22 C 1.53055 * 109.36542 * 59.31902 * 18 6 5 23 23 N 1.46958 * 109.36586 * 301.60368 * 22 18 6 24 24 H 1.08997 * 109.47227 * 300.00327 * 1 2 3 25 25 H 1.09002 * 109.46928 * 60.00201 * 1 2 3 26 26 H 1.09006 * 109.47302 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47227 * 239.99673 * 2 1 3 28 28 H 1.09002 * 109.46928 * 119.99799 * 2 1 3 29 29 H 1.08997 * 109.49028 * 178.46309 * 5 3 2 30 30 H 1.09004 * 109.48638 * 58.42235 * 5 3 2 31 31 H 1.09005 * 109.46704 * 179.97438 * 9 7 6 32 32 H 1.08996 * 109.46953 * 299.99868 * 9 7 6 33 33 H 1.09003 * 109.47097 * 59.99807 * 9 7 6 34 34 H 0.96993 * 120.00221 * 180.02562 * 13 12 10 35 35 H 1.08994 * 109.46828 * 297.00392 * 20 18 6 36 36 H 1.08998 * 109.46507 * 57.00247 * 20 18 6 37 37 H 1.08996 * 109.47191 * 65.88804 * 21 20 18 38 38 H 1.09003 * 109.46641 * 185.89349 * 21 20 18 39 39 H 1.09008 * 109.46913 * 305.88830 * 21 20 18 40 40 H 1.08997 * 109.48588 * 61.56975 * 22 18 6 41 41 H 1.09003 * 109.49111 * 181.63048 * 22 18 6 42 42 H 1.00903 * 110.99365 * 295.44976 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6050 1.9822 -0.8411 5 6 3.5653 1.4447 -0.1256 6 7 4.1509 0.7500 1.0294 7 6 5.6123 0.6648 0.9071 8 1 6.0249 0.1956 1.8002 9 6 6.1942 2.0717 0.7550 10 6 5.9679 -0.1594 -0.3034 11 1 5.1864 -0.5784 -0.9200 12 6 7.2909 -0.3786 -0.6238 13 7 8.2426 0.1312 0.1272 14 14 7.7316 -1.4008 -2.1239 15 1 6.4878 -1.8566 -2.7951 16 1 8.5294 -0.5769 -3.0672 17 1 8.5279 -2.5810 -1.7020 18 6 3.7650 1.4065 2.2862 19 1 4.1283 2.4342 2.2862 20 6 4.3764 0.6489 3.4666 21 6 4.0367 1.3751 4.7697 22 6 2.2397 1.4043 2.4125 23 7 1.6541 2.0989 1.2574 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.9264 2.4728 -0.1531 30 1 3.8554 0.9328 -1.0432 31 1 7.2787 2.0085 0.6647 32 1 5.7816 2.5409 -0.1381 33 1 5.9370 2.6679 1.6305 34 1 9.1733 -0.0226 -0.0984 35 1 3.9715 -0.3625 3.4980 36 1 5.4589 0.6034 3.3475 37 1 2.9613 1.3294 4.9414 38 1 4.5578 0.8963 5.5988 39 1 4.3492 2.4169 4.6972 40 1 1.8786 0.3762 2.4400 41 1 1.9500 1.9164 3.3301 42 1 1.9151 3.0736 1.2513 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251854554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:55 Heat of formation + Delta-G solvation = -20.563246 kcal Electronic energy + Delta-G solvation = -19075.951337 eV Core-core repulsion = 16475.671484 eV Total energy + Delta-G solvation = -2600.279853 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.94965 -37.04193 -35.57427 -33.95041 -32.71316 -30.38962 -29.62370 -27.36827 -25.95056 -25.26003 -23.84738 -22.38620 -21.09347 -19.79582 -18.26660 -17.46017 -16.75199 -16.26186 -16.04523 -15.63428 -15.08852 -14.71598 -14.43584 -14.23787 -13.98205 -13.75264 -13.67268 -13.26760 -13.03436 -12.83231 -12.78090 -12.54451 -12.52705 -12.17702 -12.01033 -11.96368 -11.75723 -11.70383 -11.59314 -11.34633 -11.24050 -10.80504 -10.46073 -9.26116 -8.74055 -8.12272 -6.21926 1.37663 1.40061 1.51317 2.40560 3.16731 3.25236 3.41418 4.00542 4.08188 4.13780 4.26437 4.32955 4.41712 4.51295 4.62111 4.65923 4.72467 4.80129 4.82557 4.84282 4.91104 4.98556 5.01783 5.10347 5.11967 5.20998 5.24665 5.31603 5.41398 5.45537 5.50693 5.54467 5.66193 5.70841 5.78720 6.11333 6.23341 6.48001 6.56467 6.80023 6.92765 7.47056 8.93947 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021534 B = 0.008856 C = 0.006997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.974927 B = 3160.927666 C = 4001.000507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.103 4.103 3 C 0.095 3.905 4 H 0.090 0.910 5 C 0.035 3.965 6 N -0.524 5.524 7 C 0.214 3.786 8 H 0.018 0.982 9 C -0.154 4.154 10 C -0.508 4.508 11 H 0.053 0.947 12 C 0.010 3.990 13 N -0.922 5.922 14 Si 0.955 3.045 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.049 3.951 19 H 0.018 0.982 20 C -0.114 4.114 21 C -0.139 4.139 22 C 0.072 3.928 23 N -0.670 5.670 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.013 0.987 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.025 0.975 33 H 0.019 0.981 34 H 0.260 0.740 35 H 0.060 0.940 36 H 0.036 0.964 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.049 0.951 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.598 3.323 3.933 13.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.141 4.141 3 C -0.015 4.015 4 H 0.108 0.892 5 C -0.095 4.095 6 N -0.248 5.248 7 C 0.107 3.893 8 H 0.036 0.964 9 C -0.214 4.214 10 C -0.547 4.547 11 H 0.072 0.928 12 C -0.188 4.188 13 N -0.562 5.562 14 Si 0.781 3.219 15 H -0.193 1.193 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.062 4.062 19 H 0.036 0.964 20 C -0.152 4.152 21 C -0.196 4.196 22 C -0.058 4.058 23 N -0.298 5.298 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.031 0.969 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.038 0.962 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.245 2.514 3.988 14.059 hybrid contribution 2.488 0.596 -0.993 2.744 sum -10.757 3.109 2.996 11.591 Atomic orbital electron populations 1.21601 0.94305 1.00917 1.02116 1.21366 0.96445 0.94805 1.01473 1.21679 0.90705 0.96439 0.92705 0.89204 1.22679 0.96329 0.95360 0.95108 1.62359 1.11039 1.50474 1.00900 1.19094 0.82941 0.91558 0.95750 0.96393 1.22166 1.03291 0.99134 0.96763 1.21401 0.91564 1.31018 1.10693 0.92850 1.25664 0.96486 0.97165 0.99495 1.70018 0.99907 1.46325 1.39971 0.85544 0.78123 0.78526 0.79671 1.19257 1.20836 1.20774 1.22422 0.98078 0.94920 0.90734 0.96368 1.21506 0.99496 0.99613 0.94611 1.21724 1.02458 0.99795 0.95672 1.22170 0.89164 1.00491 0.93967 1.60876 1.60883 1.06093 1.01929 0.91997 0.92825 0.93158 0.93410 0.92399 0.96906 0.92315 0.92282 0.95622 0.96250 0.93115 0.92122 0.94541 0.90715 0.92149 0.93141 0.90622 0.88746 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 9.80 71.98 0.71 -2.43 16 2 C -0.10 -3.06 5.00 30.59 0.15 -2.90 16 3 C 0.10 2.83 3.09 44.91 0.14 2.97 16 4 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 5 C 0.04 1.35 4.25 86.31 0.37 1.71 16 6 N -0.52 -21.74 3.90 -849.74 -3.31 -25.06 16 7 C 0.21 10.79 2.05 44.17 0.09 10.88 16 8 H 0.02 1.02 5.81 -2.39 -0.01 1.01 16 9 C -0.15 -7.65 8.25 71.99 0.59 -7.06 16 10 C -0.51 -28.09 7.90 25.60 0.20 -27.89 16 11 H 0.05 2.98 6.91 -2.91 -0.02 2.96 16 12 C 0.01 0.55 5.30 84.65 0.45 1.00 16 13 N -0.92 -53.56 11.32 21.45 0.24 -53.31 16 14 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 15 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 17 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 18 C 0.05 1.68 1.72 44.92 0.08 1.75 16 19 H 0.02 0.68 6.65 -2.38 -0.02 0.66 16 20 C -0.11 -3.83 5.21 30.59 0.16 -3.67 16 21 C -0.14 -3.45 9.47 71.98 0.68 -2.77 16 22 C 0.07 1.97 5.30 86.31 0.46 2.43 16 23 N -0.67 -17.66 6.16 -491.04 -3.02 -20.68 16 24 H 0.06 1.46 7.76 -2.39 -0.02 1.44 16 25 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.06 1.93 5.83 -2.39 -0.01 1.92 16 29 H 0.01 0.51 6.44 -2.39 -0.02 0.49 16 30 H 0.06 2.54 6.58 -2.38 -0.02 2.52 16 31 H 0.06 3.27 6.07 -2.38 -0.01 3.26 16 32 H 0.02 1.23 6.43 -2.39 -0.02 1.21 16 33 H 0.02 0.86 6.65 -2.39 -0.02 0.84 16 34 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 36 H 0.04 1.48 6.04 -2.39 -0.01 1.46 16 37 H 0.07 1.53 6.86 -2.39 -0.02 1.51 16 38 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.08 2.21 6.24 -2.39 -0.01 2.19 16 41 H 0.09 2.14 6.73 -2.39 -0.02 2.13 16 42 H 0.34 8.37 8.89 -89.69 -0.80 7.57 16 Total: -1.00 -59.06 304.77 0.20 -58.86 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.20 Total: 19.79 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 4.08 Total: -25.96 kcal Atomic # 7 Polarization: -92.96 SS G_CDS: -6.09 Total: -99.05 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -59.06 0.20 -58.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251854554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.295 kcal (2) G-P(sol) polarization free energy of solvation -59.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds