Wall clock time and date at job start Mon Mar 30 2020 04:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46846 * 110.99687 * 2 1 4 4 C 1.53041 * 109.52252 * 174.15863 * 3 2 1 5 5 C 1.53115 * 109.27772 * 59.17709 * 4 3 2 6 6 C 1.53126 * 109.16257 * 302.34554 * 5 4 3 7 7 H 1.09005 * 109.49957 * 297.67444 * 6 5 4 8 8 C 1.52997 * 109.50298 * 177.59779 * 6 5 4 9 9 C 1.52996 * 109.47627 * 60.00100 * 8 6 5 10 10 C 1.52998 * 109.47118 * 299.99678 * 8 6 5 11 11 C 1.53004 * 109.46997 * 180.02562 * 8 6 5 12 12 N 1.46494 * 109.47534 * 179.97438 * 11 8 6 13 13 C 1.36931 * 120.00458 * 179.97438 * 12 11 8 14 14 H 1.08002 * 120.00103 * 0.02562 * 13 12 11 15 15 C 1.38812 * 120.00429 * 179.97438 * 13 12 11 16 16 N 1.31624 * 119.99535 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00484 * 179.97438 * 15 13 12 18 18 H 1.48490 * 109.47339 * 180.02562 * 17 15 13 19 19 H 1.48493 * 109.47239 * 300.00542 * 17 15 13 20 20 H 1.48504 * 109.46636 * 60.00101 * 17 15 13 21 21 C 1.46840 * 111.00330 * 235.78627 * 2 1 3 22 22 H 1.09000 * 109.47327 * 63.96025 * 1 2 3 23 23 H 1.09008 * 109.47263 * 183.95719 * 1 2 3 24 24 H 1.09001 * 109.47460 * 303.95865 * 1 2 3 25 25 H 1.08995 * 109.46582 * 54.14216 * 3 2 1 26 26 H 1.08998 * 109.45542 * 294.16409 * 3 2 1 27 27 H 1.08997 * 109.50317 * 299.23634 * 4 3 2 28 28 H 1.08996 * 109.53619 * 179.13662 * 4 3 2 29 29 H 1.09004 * 109.52522 * 182.44023 * 5 4 3 30 30 H 1.09003 * 109.52717 * 62.24836 * 5 4 3 31 31 H 1.08996 * 109.47637 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.46562 * 300.00030 * 9 8 6 33 33 H 1.09000 * 109.46797 * 59.99395 * 9 8 6 34 34 H 1.09006 * 109.47458 * 300.00231 * 10 8 6 35 35 H 1.09004 * 109.47239 * 60.00361 * 10 8 6 36 36 H 1.08996 * 109.47462 * 180.02562 * 10 8 6 37 37 H 1.08998 * 109.46846 * 59.99452 * 11 8 6 38 38 H 1.09000 * 109.46887 * 300.00275 * 11 8 6 39 39 H 0.97000 * 119.99459 * 359.97438 * 12 11 8 40 40 H 0.97005 * 119.99717 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.46147 * 65.82389 * 21 2 1 42 42 H 1.08997 * 109.46306 * 305.85681 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 0.1468 5 6 4.1188 0.5370 -1.0142 6 6 3.5182 -0.8715 -1.0207 7 1 3.7820 -1.3838 -0.0954 8 6 4.0682 -1.6559 -2.2136 9 6 5.5911 -1.7519 -2.1025 10 6 3.6958 -0.9372 -3.5119 11 6 3.4671 -3.0629 -2.2197 12 7 3.9932 -3.8138 -3.3622 13 6 3.5948 -5.1067 -3.5739 14 1 2.8923 -5.5727 -2.8988 15 6 4.0929 -5.8180 -4.6568 16 7 4.9486 -5.2499 -5.4799 17 14 3.5499 -7.5820 -4.9452 18 1 4.2216 -8.1147 -6.1576 19 1 3.9190 -8.4118 -3.7704 20 1 2.0778 -7.6217 -5.1364 21 6 1.9953 -0.7708 -1.1336 22 1 -0.3634 0.4511 -0.9233 23 1 -0.3634 -1.0253 0.0709 24 1 -0.3634 0.5740 0.8524 25 1 1.5633 1.9258 0.8329 26 1 1.7325 1.8606 -0.9377 27 1 3.7813 0.8569 1.0907 28 1 3.9103 2.3511 0.1314 29 1 5.1998 0.4715 -0.8904 30 1 3.8887 1.0354 -1.9560 31 1 5.9829 -2.3111 -2.9521 32 1 6.0189 -0.7494 -2.0985 33 1 5.8563 -2.2638 -1.1775 34 1 2.6108 -0.8688 -3.5911 35 1 4.1237 0.0653 -3.5079 36 1 4.0872 -1.4962 -4.3618 37 1 2.3822 -2.9941 -2.2990 38 1 3.7319 -3.5751 -1.2947 39 1 4.6238 -3.3951 -3.9688 40 1 5.2970 -5.7472 -6.2364 41 1 1.7325 -0.2709 -2.0659 42 1 1.5635 -1.7715 -1.1241 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258725138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:36 Heat of formation + Delta-G solvation = -2.684068 kcal Electronic energy + Delta-G solvation = -18455.601465 eV Core-core repulsion = 15856.096911 eV Total energy + Delta-G solvation = -2599.504554 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.71270 -36.75219 -33.85874 -32.57099 -30.51742 -29.23907 -27.06338 -26.54319 -25.49027 -23.55754 -22.76751 -21.78460 -19.81274 -17.95654 -17.10669 -15.76714 -15.20166 -14.65837 -14.54822 -14.34532 -14.07796 -13.53456 -13.37697 -13.17348 -12.80689 -12.63826 -12.27552 -12.18097 -11.81471 -11.52928 -11.39202 -11.16405 -10.91978 -10.86654 -10.76551 -10.64735 -10.46587 -10.12947 -10.01783 -9.94327 -9.57113 -9.40975 -8.78648 -8.26904 -6.81957 -5.70305 -2.97154 3.47884 3.52054 3.53180 3.95971 4.64313 4.83745 4.89474 4.98770 5.13763 5.33278 5.39127 5.40811 5.49869 5.54215 5.63542 5.67356 5.72981 5.76195 5.82544 5.84493 5.97289 6.04388 6.10481 6.15217 6.18024 6.22442 6.36885 6.41764 6.45177 6.52571 6.68391 6.79332 6.83469 7.03063 7.05300 7.12158 7.16787 7.75817 8.49810 9.60582 10.21085 10.55832 11.52899 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.035736 B = 0.005590 C = 0.005086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.337262 B = 5007.370447 C = 5504.206792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.056 3.944 4 C -0.116 4.116 5 C -0.119 4.119 6 C -0.067 4.067 7 H 0.075 0.925 8 C -0.065 4.065 9 C -0.136 4.136 10 C -0.139 4.139 11 C 0.162 3.838 12 N -0.729 5.729 13 C -0.235 4.235 14 H 0.068 0.932 15 C -0.015 4.015 16 N -0.936 5.936 17 Si 0.906 3.094 18 H -0.292 1.292 19 H -0.287 1.287 20 H -0.287 1.287 21 C 0.057 3.943 22 H 0.022 0.978 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.029 0.971 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.045 0.955 36 H 0.065 0.935 37 H 0.018 0.982 38 H 0.017 0.983 39 H 0.384 0.616 40 H 0.254 0.746 41 H 0.037 0.963 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.334 14.400 10.127 18.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.072 4.072 4 C -0.154 4.154 5 C -0.157 4.157 6 C -0.087 4.087 7 H 0.094 0.906 8 C -0.066 4.066 9 C -0.193 4.193 10 C -0.196 4.196 11 C 0.035 3.965 12 N -0.374 5.374 13 C -0.367 4.367 14 H 0.086 0.914 15 C -0.211 4.211 16 N -0.585 5.585 17 Si 0.737 3.263 18 H -0.218 1.218 19 H -0.214 1.214 20 H -0.214 1.214 21 C -0.071 4.071 22 H 0.041 0.959 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.047 0.953 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.036 0.964 38 H 0.035 0.965 39 H 0.219 0.781 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.262 14.012 10.565 18.059 hybrid contribution -0.435 -0.527 -1.165 1.350 sum -4.697 13.485 9.400 17.096 Atomic orbital electron populations 1.22333 0.87661 1.02265 1.00001 1.61917 1.07220 1.13410 1.44370 1.22074 0.95880 0.89401 0.99862 1.21588 0.94295 0.99824 0.99723 1.21754 1.00184 0.95661 0.98076 1.21120 0.93457 0.95333 0.98768 0.90620 1.20685 0.95875 0.95841 0.94161 1.21823 0.94606 1.00427 1.02435 1.21909 1.00823 0.99065 0.97813 1.20726 0.95429 0.89047 0.91313 1.42424 1.53782 1.12078 1.29124 1.19206 1.20610 0.89191 1.07670 0.91410 1.24703 0.99991 0.98346 0.98063 1.69650 1.34872 1.36721 1.17252 0.86283 0.77875 0.85020 0.77124 1.21759 1.21361 1.21397 1.22320 0.95709 0.98340 0.90690 0.95930 0.91276 0.91764 0.91346 0.95265 0.91289 0.91966 0.91492 0.91967 0.91566 0.93559 0.93155 0.93185 0.93614 0.91598 0.96447 0.96532 0.78074 0.93589 0.94504 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.59 60.06 0.58 0.85 16 2 N -0.54 -6.84 4.91 -242.97 -1.19 -8.03 16 3 C 0.06 0.61 5.46 -3.83 -0.02 0.59 16 4 C -0.12 -1.23 6.09 -26.65 -0.16 -1.40 16 5 C -0.12 -1.44 4.56 -26.61 -0.12 -1.56 16 6 C -0.07 -0.95 1.71 -90.54 -0.16 -1.11 16 7 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 8 C -0.06 -1.07 0.33 -154.51 -0.05 -1.12 16 9 C -0.14 -2.24 7.95 37.16 0.30 -1.94 16 10 C -0.14 -2.29 7.59 37.16 0.28 -2.01 16 11 C 0.16 3.36 4.80 -4.04 -0.02 3.34 16 12 N -0.73 -18.63 5.00 -59.91 -0.30 -18.93 16 13 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 14 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 15 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 16 N -0.94 -28.59 13.06 55.49 0.72 -27.86 16 17 Si 0.91 22.78 29.55 -169.99 -5.02 17.75 16 18 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 C 0.06 0.79 4.04 -3.84 -0.02 0.78 16 22 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 23 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 24 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 25 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 26 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.79 6.58 -51.93 -0.34 0.44 16 30 H 0.06 0.76 6.32 -51.93 -0.33 0.43 16 31 H 0.07 1.27 6.86 -51.93 -0.36 0.91 16 32 H 0.05 0.65 6.49 -51.93 -0.34 0.31 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.81 6.41 -51.93 -0.33 0.48 16 35 H 0.04 0.65 6.38 -51.93 -0.33 0.32 16 36 H 0.07 1.26 6.86 -51.93 -0.36 0.91 16 37 H 0.02 0.37 6.45 -51.93 -0.34 0.04 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.38 10.23 5.36 -40.82 -0.22 10.01 16 40 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.04 0.53 6.38 -51.93 -0.33 0.20 16 42 H 0.08 1.23 6.46 -51.93 -0.34 0.89 16 LS Contribution 309.49 15.07 4.66 4.66 Total: -1.00 -30.06 309.49 -8.14 -38.20 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -7.37 Total: 5.19 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 0.36 Total: -10.98 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.77 Total: -54.82 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.06 -8.14 -38.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258725138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.516 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds