Wall clock time and date at job start Mon Mar 30 2020 04:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46846 * 110.99687 * 2 1 4 4 C 1.53041 * 109.52252 * 174.15863 * 3 2 1 5 5 C 1.53115 * 109.27772 * 59.17709 * 4 3 2 6 6 C 1.53126 * 109.16257 * 302.34554 * 5 4 3 7 7 H 1.09005 * 109.49957 * 297.67444 * 6 5 4 8 8 C 1.52997 * 109.50298 * 177.59779 * 6 5 4 9 9 C 1.52996 * 109.47627 * 60.00100 * 8 6 5 10 10 C 1.52998 * 109.47118 * 299.99678 * 8 6 5 11 11 C 1.53004 * 109.46997 * 180.02562 * 8 6 5 12 12 N 1.46494 * 109.47534 * 179.97438 * 11 8 6 13 13 C 1.36931 * 120.00458 * 179.97438 * 12 11 8 14 14 H 1.08002 * 120.00103 * 0.02562 * 13 12 11 15 15 C 1.38812 * 120.00429 * 179.97438 * 13 12 11 16 16 N 1.31624 * 119.99535 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00484 * 179.97438 * 15 13 12 18 18 H 1.48490 * 109.47339 * 180.02562 * 17 15 13 19 19 H 1.48493 * 109.47239 * 300.00542 * 17 15 13 20 20 H 1.48504 * 109.46636 * 60.00101 * 17 15 13 21 21 C 1.46840 * 111.00330 * 235.78627 * 2 1 3 22 22 H 1.09000 * 109.47327 * 63.96025 * 1 2 3 23 23 H 1.09008 * 109.47263 * 183.95719 * 1 2 3 24 24 H 1.09001 * 109.47460 * 303.95865 * 1 2 3 25 25 H 1.08995 * 109.46582 * 54.14216 * 3 2 1 26 26 H 1.08998 * 109.45542 * 294.16409 * 3 2 1 27 27 H 1.08997 * 109.50317 * 299.23634 * 4 3 2 28 28 H 1.08996 * 109.53619 * 179.13662 * 4 3 2 29 29 H 1.09004 * 109.52522 * 182.44023 * 5 4 3 30 30 H 1.09003 * 109.52717 * 62.24836 * 5 4 3 31 31 H 1.08996 * 109.47637 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.46562 * 300.00030 * 9 8 6 33 33 H 1.09000 * 109.46797 * 59.99395 * 9 8 6 34 34 H 1.09006 * 109.47458 * 300.00231 * 10 8 6 35 35 H 1.09004 * 109.47239 * 60.00361 * 10 8 6 36 36 H 1.08996 * 109.47462 * 180.02562 * 10 8 6 37 37 H 1.08998 * 109.46846 * 59.99452 * 11 8 6 38 38 H 1.09000 * 109.46887 * 300.00275 * 11 8 6 39 39 H 0.97000 * 119.99459 * 359.97438 * 12 11 8 40 40 H 0.97005 * 119.99717 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.46147 * 65.82389 * 21 2 1 42 42 H 1.08997 * 109.46306 * 305.85681 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 0.1468 5 6 4.1188 0.5370 -1.0142 6 6 3.5182 -0.8715 -1.0207 7 1 3.7820 -1.3838 -0.0954 8 6 4.0682 -1.6559 -2.2136 9 6 5.5911 -1.7519 -2.1025 10 6 3.6958 -0.9372 -3.5119 11 6 3.4671 -3.0629 -2.2197 12 7 3.9932 -3.8138 -3.3622 13 6 3.5948 -5.1067 -3.5739 14 1 2.8923 -5.5727 -2.8988 15 6 4.0929 -5.8180 -4.6568 16 7 4.9486 -5.2499 -5.4799 17 14 3.5499 -7.5820 -4.9452 18 1 4.2216 -8.1147 -6.1576 19 1 3.9190 -8.4118 -3.7704 20 1 2.0778 -7.6217 -5.1364 21 6 1.9953 -0.7708 -1.1336 22 1 -0.3634 0.4511 -0.9233 23 1 -0.3634 -1.0253 0.0709 24 1 -0.3634 0.5740 0.8524 25 1 1.5633 1.9258 0.8329 26 1 1.7325 1.8606 -0.9377 27 1 3.7813 0.8569 1.0907 28 1 3.9103 2.3511 0.1314 29 1 5.1998 0.4715 -0.8904 30 1 3.8887 1.0354 -1.9560 31 1 5.9829 -2.3111 -2.9521 32 1 6.0189 -0.7494 -2.0985 33 1 5.8563 -2.2638 -1.1775 34 1 2.6108 -0.8688 -3.5911 35 1 4.1237 0.0653 -3.5079 36 1 4.0872 -1.4962 -4.3618 37 1 2.3822 -2.9941 -2.2990 38 1 3.7319 -3.5751 -1.2947 39 1 4.6238 -3.3951 -3.9688 40 1 5.2970 -5.7472 -6.2364 41 1 1.7325 -0.2709 -2.0659 42 1 1.5635 -1.7715 -1.1241 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258725138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:36 Heat of formation + Delta-G solvation = -21.896877 kcal Electronic energy + Delta-G solvation = -18456.434594 eV Core-core repulsion = 15856.096911 eV Total energy + Delta-G solvation = -2600.337683 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.86528 -38.05085 -35.61945 -33.80175 -32.32369 -30.51816 -28.30919 -27.83707 -27.03137 -25.19124 -23.88805 -23.12394 -20.89534 -19.54078 -18.91624 -16.93148 -16.51866 -16.23195 -15.91053 -15.58926 -15.29700 -14.99082 -14.91777 -14.42978 -14.15915 -14.08439 -13.48173 -13.25335 -13.13290 -12.89742 -12.78004 -12.64219 -12.54477 -12.41248 -12.19141 -12.05763 -11.80847 -11.73331 -11.59030 -11.22125 -10.96057 -10.90379 -10.76879 -9.22671 -8.94567 -7.93430 -5.20656 1.46320 1.49499 1.55682 2.57014 3.01710 3.39430 3.72646 3.85408 3.89134 4.14421 4.18936 4.22711 4.32608 4.37885 4.51377 4.54437 4.58323 4.67157 4.72109 4.83242 4.86742 4.89799 4.96167 5.01010 5.02085 5.04603 5.11941 5.19612 5.21502 5.22508 5.24572 5.39181 5.46974 5.50578 5.62417 5.68847 6.14757 6.22454 6.29623 7.35903 8.14222 8.38706 9.30115 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.035736 B = 0.005590 C = 0.005086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.337262 B = 5007.370447 C = 5504.206792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.555 5.555 3 C 0.053 3.947 4 C -0.112 4.112 5 C -0.116 4.116 6 C -0.059 4.059 7 H 0.068 0.932 8 C -0.056 4.056 9 C -0.130 4.130 10 C -0.131 4.131 11 C 0.162 3.838 12 N -0.738 5.738 13 C -0.246 4.246 14 H 0.070 0.930 15 C -0.074 4.074 16 N -0.969 5.969 17 Si 0.972 3.028 18 H -0.294 1.294 19 H -0.279 1.279 20 H -0.279 1.279 21 C 0.062 3.938 22 H 0.023 0.977 23 H 0.063 0.937 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.030 0.970 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.033 0.967 37 H 0.016 0.984 38 H 0.009 0.991 39 H 0.377 0.623 40 H 0.251 0.749 41 H 0.032 0.968 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.822 15.744 11.350 19.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.280 5.280 3 C -0.074 4.074 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.078 4.078 7 H 0.086 0.914 8 C -0.057 4.057 9 C -0.188 4.188 10 C -0.189 4.189 11 C 0.035 3.965 12 N -0.382 5.382 13 C -0.378 4.378 14 H 0.088 0.912 15 C -0.266 4.266 16 N -0.620 5.620 17 Si 0.801 3.199 18 H -0.220 1.220 19 H -0.205 1.205 20 H -0.205 1.205 21 C -0.066 4.066 22 H 0.042 0.958 23 H 0.082 0.918 24 H 0.101 0.899 25 H 0.104 0.896 26 H 0.048 0.952 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.034 0.966 38 H 0.027 0.973 39 H 0.210 0.790 40 H 0.060 0.940 41 H 0.050 0.950 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.775 15.372 11.826 19.974 hybrid contribution -0.321 -0.907 -1.484 1.769 sum -5.096 14.465 10.342 18.498 Atomic orbital electron populations 1.22383 0.86689 1.02377 1.00892 1.61927 1.08258 1.14463 1.43335 1.22179 0.96200 0.88437 1.00626 1.21578 0.93967 1.00761 0.98678 1.21735 1.00532 0.94060 0.99032 1.21003 0.93668 0.96390 0.96757 0.91379 1.20596 0.95840 0.93623 0.95624 1.21767 0.94429 1.01659 1.00905 1.21831 1.00761 0.99952 0.96315 1.20864 0.95336 0.91097 0.89170 1.42597 1.53684 1.11706 1.30226 1.19604 1.20180 0.90477 1.07540 0.91163 1.25518 1.00531 1.02473 0.98113 1.69812 1.36275 1.38183 1.17755 0.85229 0.77634 0.80146 0.76869 1.21982 1.20524 1.20520 1.22160 0.95501 0.97643 0.91273 0.95810 0.91811 0.89877 0.89609 0.95214 0.91564 0.89680 0.90791 0.91751 0.94757 0.90594 0.93194 0.93263 0.90863 0.94796 0.96643 0.97271 0.78978 0.94035 0.94963 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.59 127.69 1.22 1.71 16 2 N -0.56 -12.90 4.91 -922.61 -4.53 -17.43 16 3 C 0.05 1.00 5.46 86.33 0.47 1.47 16 4 C -0.11 -2.00 6.09 30.65 0.19 -1.82 16 5 C -0.12 -2.47 4.56 30.67 0.14 -2.33 16 6 C -0.06 -1.58 1.71 -10.74 -0.02 -1.60 16 7 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 8 C -0.06 -1.83 0.33 -52.18 -0.02 -1.85 16 9 C -0.13 -4.24 7.95 71.98 0.57 -3.66 16 10 C -0.13 -4.28 7.59 71.98 0.55 -3.74 16 11 C 0.16 6.82 4.80 86.38 0.41 7.23 16 12 N -0.74 -38.73 5.00 -343.46 -1.72 -40.45 16 13 C -0.25 -14.23 9.99 84.03 0.84 -13.39 16 14 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 15 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 16 N -0.97 -60.42 13.06 21.65 0.28 -60.14 16 17 Si 0.97 47.21 29.55 68.60 2.03 49.24 16 18 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 19 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 C 0.06 1.68 4.04 86.33 0.35 2.02 16 22 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 23 H 0.06 1.30 8.14 -2.38 -0.02 1.29 16 24 H 0.08 1.32 8.10 -2.39 -0.02 1.30 16 25 H 0.09 1.34 8.09 -2.39 -0.02 1.32 16 26 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.49 6.58 -2.39 -0.02 1.47 16 30 H 0.06 1.36 6.32 -2.39 -0.02 1.35 16 31 H 0.03 1.32 6.86 -2.39 -0.02 1.31 16 32 H 0.08 1.99 6.49 -2.39 -0.02 1.98 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.05 1.59 6.41 -2.38 -0.02 1.57 16 35 H 0.07 1.96 6.38 -2.38 -0.02 1.95 16 36 H 0.03 1.31 6.86 -2.39 -0.02 1.30 16 37 H 0.02 0.67 6.45 -2.39 -0.02 0.66 16 38 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.38 20.78 5.36 -92.71 -0.50 20.28 16 40 H 0.25 15.16 8.31 -92.70 -0.77 14.38 16 41 H 0.03 0.89 6.38 -2.39 -0.02 0.88 16 42 H 0.06 1.85 6.46 -2.39 -0.02 1.83 16 Total: -1.00 -64.59 309.49 1.72 -62.87 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.48 Total: 25.77 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: 5.18 Total: -19.85 kcal Atomic # 7 Polarization: -112.06 SS G_CDS: -5.97 Total: -118.02 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -64.59 1.72 -62.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258725138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.970 kcal (2) G-P(sol) polarization free energy of solvation -64.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds