Wall clock time and date at job start Mon Mar 30 2020 03:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47060 * 2 1 4 4 C 1.53000 * 109.47273 * 175.00015 * 3 2 1 5 5 C 1.53008 * 109.46947 * 294.09280 * 4 3 2 6 6 N 1.46897 * 109.47263 * 295.00015 * 3 2 1 7 7 C 1.46953 * 110.99861 * 290.10438 * 6 3 2 8 8 C 1.53049 * 109.36701 * 176.81076 * 7 6 3 9 9 N 1.46955 * 109.36407 * 58.39840 * 8 7 6 10 10 C 1.46897 * 111.00225 * 176.81458 * 9 8 7 11 11 C 1.46958 * 110.88335 * 300.68627 * 9 8 7 12 12 H 1.09006 * 109.48199 * 299.32657 * 11 9 8 13 13 C 1.50702 * 109.49049 * 179.28706 * 11 9 8 14 14 H 1.07995 * 120.00264 * 327.50948 * 13 11 9 15 15 C 1.37877 * 119.99762 * 147.78451 * 13 11 9 16 16 N 1.31515 * 119.99936 * 186.19346 * 15 13 11 17 17 Si 1.86800 * 120.00030 * 6.19988 * 15 13 11 18 18 H 1.48503 * 109.47079 * 92.45054 * 17 15 13 19 19 H 1.48507 * 109.47027 * 212.44577 * 17 15 13 20 20 H 1.48492 * 109.47323 * 332.44659 * 17 15 13 21 21 C 1.46955 * 111.00294 * 166.30677 * 6 3 2 22 22 H 1.08993 * 109.47581 * 299.99864 * 1 2 3 23 23 H 1.09004 * 109.47335 * 60.00120 * 1 2 3 24 24 H 1.08996 * 109.47104 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47174 * 240.00100 * 2 1 3 26 26 H 1.09004 * 109.47335 * 119.99880 * 2 1 3 27 27 H 1.09002 * 109.47076 * 55.00345 * 3 2 1 28 28 H 1.09002 * 109.47392 * 54.08973 * 4 3 2 29 29 H 1.09000 * 109.47255 * 174.09638 * 4 3 2 30 30 H 1.09003 * 109.47156 * 66.06369 * 5 4 3 31 31 H 1.09003 * 109.47257 * 186.05784 * 5 4 3 32 32 H 1.08995 * 109.47377 * 306.06318 * 5 4 3 33 33 H 1.08996 * 109.49145 * 56.84339 * 7 6 3 34 34 H 1.09001 * 109.51164 * 296.79080 * 7 6 3 35 35 H 1.09004 * 109.49141 * 298.43729 * 8 7 6 36 36 H 1.08996 * 109.51041 * 178.37964 * 8 7 6 37 37 H 1.08999 * 109.47310 * 189.37842 * 10 9 8 38 38 H 1.09004 * 109.47035 * 309.37479 * 10 9 8 39 39 H 1.08999 * 109.47151 * 69.37651 * 10 9 8 40 40 H 0.96999 * 120.00097 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.49241 * 63.21634 * 21 6 3 42 42 H 1.09000 * 109.48583 * 303.15439 * 21 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5647 1.4444 0.1257 5 6 3.9641 0.8947 1.4966 6 7 1.6513 2.0993 -1.2552 7 6 2.4020 1.5485 -2.3921 8 6 1.9128 2.2009 -3.6873 9 7 2.0918 3.6568 -3.5973 10 6 1.7032 4.3136 -4.8525 11 6 1.3411 4.2076 -2.4603 12 1 0.2787 4.0025 -2.5925 13 6 1.5604 5.6968 -2.3871 14 1 2.5048 6.1195 -2.6967 15 6 0.5573 6.5191 -1.9195 16 7 0.7013 7.8254 -1.9690 17 14 -1.0061 5.7778 -1.2156 18 1 -0.8614 5.6206 0.2540 19 1 -2.1538 6.6742 -1.5069 20 1 -1.2462 4.4493 -1.8342 21 6 1.8304 3.5551 -1.1653 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6053 1.9815 0.8419 28 1 3.9946 0.8182 -0.6561 29 1 3.9367 2.4636 0.0206 30 1 3.6872 -0.1577 1.5609 31 1 5.0414 0.9955 1.6288 32 1 3.4483 1.4543 2.2769 33 1 2.2435 0.4715 -2.4451 34 1 3.4645 1.7535 -2.2605 35 1 0.8569 1.9728 -3.8331 36 1 2.4878 1.8152 -4.5290 37 1 1.9991 5.3621 -4.8207 38 1 2.1994 3.8213 -5.6889 39 1 0.6228 4.2446 -4.9793 40 1 -0.0046 8.4040 -1.6404 41 1 2.8862 3.7834 -1.0194 42 1 1.2550 3.9410 -0.3238 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259586205.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:43 Heat of formation + Delta-G solvation = 1.760936 kcal Electronic energy + Delta-G solvation = -18923.332604 eV Core-core repulsion = 16324.020800 eV Total energy + Delta-G solvation = -2599.311804 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.23008 -36.49104 -32.79371 -32.57667 -31.58354 -30.29517 -27.76008 -25.44834 -24.63179 -22.66696 -22.41552 -22.15225 -19.52155 -18.38929 -16.91566 -15.96861 -14.78885 -14.61731 -14.22030 -14.19273 -14.08927 -13.83570 -13.50161 -13.12817 -12.64311 -12.45607 -12.10831 -11.90969 -11.75294 -11.59799 -11.38573 -11.22014 -10.93897 -10.88521 -10.68191 -10.63002 -10.42967 -10.22340 -9.92455 -9.80140 -9.71746 -9.14816 -8.55318 -7.66517 -7.20149 -6.10616 -4.10357 3.28068 3.36752 3.42344 4.38954 4.44282 4.88122 4.92544 5.10564 5.28344 5.34399 5.35698 5.52567 5.56941 5.64702 5.76445 5.82193 5.90209 5.94051 6.00921 6.06194 6.15087 6.18110 6.22070 6.25004 6.30659 6.38393 6.44167 6.47995 6.54738 6.60961 6.64683 6.77688 7.01317 7.23107 7.45800 7.68471 7.78029 8.03372 8.17144 8.67317 9.00183 9.53271 11.01591 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021768 B = 0.008790 C = 0.007877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.002823 B = 3184.771519 C = 3553.870292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C 0.081 3.919 4 C -0.157 4.157 5 C -0.146 4.146 6 N -0.538 5.538 7 C 0.060 3.940 8 C 0.054 3.946 9 N -0.537 5.537 10 C 0.046 3.954 11 C 0.181 3.819 12 H 0.021 0.979 13 C -0.503 4.503 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.895 5.895 17 Si 0.865 3.135 18 H -0.276 1.276 19 H -0.289 1.289 20 H -0.256 1.256 21 C 0.066 3.934 22 H 0.047 0.953 23 H 0.067 0.933 24 H 0.041 0.959 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.040 0.960 35 H 0.027 0.973 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.041 0.959 39 H 0.012 0.988 40 H 0.264 0.736 41 H 0.037 0.963 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.108 -14.730 2.637 15.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C -0.027 4.027 4 C -0.196 4.196 5 C -0.204 4.204 6 N -0.262 5.262 7 C -0.068 4.068 8 C -0.075 4.075 9 N -0.262 5.262 10 C -0.102 4.102 11 C 0.074 3.926 12 H 0.038 0.962 13 C -0.542 4.542 14 H 0.098 0.902 15 C -0.128 4.128 16 N -0.533 5.533 17 Si 0.693 3.307 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.180 1.180 21 C -0.061 4.061 22 H 0.066 0.934 23 H 0.086 0.914 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.999 -14.536 2.672 14.914 hybrid contribution -0.845 -0.199 0.504 1.004 sum 1.154 -14.735 3.176 15.118 Atomic orbital electron populations 1.21652 0.95611 1.00192 1.02645 1.21578 0.96467 0.95817 1.01124 1.21799 0.92542 0.95140 0.93264 1.22205 0.97996 1.01827 0.97537 1.21747 1.00697 1.00729 0.97241 1.62504 1.55584 1.05983 1.02090 1.22088 0.96152 0.97723 0.90867 1.22106 0.98514 0.90564 0.96305 1.62192 1.58125 1.01305 1.04550 1.22076 0.97059 1.00941 0.90152 1.19922 0.92156 0.94651 0.85884 0.96162 1.20884 1.02013 0.88165 1.43150 0.90209 1.24986 0.97935 0.94652 0.95211 1.69908 1.34200 1.02766 1.46416 0.87041 0.83583 0.79933 0.80157 1.20160 1.21542 1.18046 1.22585 0.99599 0.83852 1.00088 0.93409 0.91427 0.93964 0.92250 0.92225 0.90596 0.91882 0.91501 0.92839 0.93204 0.92849 0.91586 0.94194 0.95464 0.91884 0.90174 0.94013 0.96971 0.92609 0.94440 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.80 37.15 0.36 -1.51 16 2 C -0.11 -1.42 5.26 -26.73 -0.14 -1.56 16 3 C 0.08 1.22 1.75 -67.71 -0.12 1.10 16 4 C -0.16 -2.15 4.42 -26.73 -0.12 -2.27 16 5 C -0.15 -1.66 9.54 37.16 0.35 -1.30 16 6 N -0.54 -9.66 4.09 -226.50 -0.93 -10.59 16 7 C 0.06 0.99 4.68 -3.77 -0.02 0.97 16 8 C 0.05 0.97 5.61 -3.77 -0.02 0.95 16 9 N -0.54 -11.55 4.77 -236.13 -1.13 -12.67 16 10 C 0.05 0.94 9.19 60.06 0.55 1.49 16 11 C 0.18 4.33 1.52 -68.81 -0.10 4.23 16 12 H 0.02 0.53 5.23 -51.93 -0.27 0.26 16 13 C -0.50 -13.93 7.62 -34.44 -0.26 -14.19 16 14 H 0.08 2.44 8.01 -52.49 -0.42 2.02 16 15 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 16 N -0.90 -26.93 13.96 55.43 0.77 -26.16 16 17 Si 0.87 21.45 26.72 -169.99 -4.54 16.91 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.26 -6.24 5.84 56.52 0.33 -5.91 16 21 C 0.07 1.43 4.53 -3.77 -0.02 1.41 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 1.02 7.75 -51.93 -0.40 0.62 16 24 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.74 6.44 -51.93 -0.33 0.40 16 26 H 0.06 0.66 6.51 -51.93 -0.34 0.32 16 27 H 0.08 1.20 7.95 -51.93 -0.41 0.79 16 28 H 0.06 0.84 6.76 -51.93 -0.35 0.49 16 29 H 0.07 1.05 6.71 -51.93 -0.35 0.70 16 30 H 0.05 0.54 6.78 -51.93 -0.35 0.19 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.95 6.41 -51.93 -0.33 0.61 16 34 H 0.04 0.68 6.54 -51.93 -0.34 0.34 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.99 8.08 -51.93 -0.42 0.58 16 37 H 0.08 1.80 7.19 -51.93 -0.37 1.42 16 38 H 0.04 0.72 8.04 -51.93 -0.42 0.30 16 39 H 0.01 0.24 8.13 -51.93 -0.42 -0.18 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.04 0.83 6.80 -51.93 -0.35 0.48 16 42 H 0.06 1.40 7.02 -51.93 -0.36 1.03 16 LS Contribution 308.34 15.07 4.65 4.65 Total: -1.00 -28.98 308.34 -8.37 -37.36 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -7.57 Total: -0.86 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 0.37 Total: -8.63 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -1.28 Total: -49.42 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.54 Total: 16.91 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.98 -8.37 -37.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259586205.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.119 kcal (2) G-P(sol) polarization free energy of solvation -28.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds