Wall clock time and date at job start Mon Mar 30 2020 03:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47060 * 2 1 4 4 C 1.53000 * 109.47273 * 175.00015 * 3 2 1 5 5 C 1.53008 * 109.46947 * 294.09280 * 4 3 2 6 6 N 1.46897 * 109.47263 * 295.00015 * 3 2 1 7 7 C 1.46953 * 110.99861 * 290.10438 * 6 3 2 8 8 C 1.53049 * 109.36701 * 176.81076 * 7 6 3 9 9 N 1.46955 * 109.36407 * 58.39840 * 8 7 6 10 10 C 1.46897 * 111.00225 * 176.81458 * 9 8 7 11 11 C 1.46958 * 110.88335 * 300.68627 * 9 8 7 12 12 H 1.09006 * 109.48199 * 299.32657 * 11 9 8 13 13 C 1.50702 * 109.49049 * 179.28706 * 11 9 8 14 14 H 1.07995 * 120.00264 * 327.50948 * 13 11 9 15 15 C 1.37877 * 119.99762 * 147.78451 * 13 11 9 16 16 N 1.31515 * 119.99936 * 186.19346 * 15 13 11 17 17 Si 1.86800 * 120.00030 * 6.19988 * 15 13 11 18 18 H 1.48503 * 109.47079 * 92.45054 * 17 15 13 19 19 H 1.48507 * 109.47027 * 212.44577 * 17 15 13 20 20 H 1.48492 * 109.47323 * 332.44659 * 17 15 13 21 21 C 1.46955 * 111.00294 * 166.30677 * 6 3 2 22 22 H 1.08993 * 109.47581 * 299.99864 * 1 2 3 23 23 H 1.09004 * 109.47335 * 60.00120 * 1 2 3 24 24 H 1.08996 * 109.47104 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47174 * 240.00100 * 2 1 3 26 26 H 1.09004 * 109.47335 * 119.99880 * 2 1 3 27 27 H 1.09002 * 109.47076 * 55.00345 * 3 2 1 28 28 H 1.09002 * 109.47392 * 54.08973 * 4 3 2 29 29 H 1.09000 * 109.47255 * 174.09638 * 4 3 2 30 30 H 1.09003 * 109.47156 * 66.06369 * 5 4 3 31 31 H 1.09003 * 109.47257 * 186.05784 * 5 4 3 32 32 H 1.08995 * 109.47377 * 306.06318 * 5 4 3 33 33 H 1.08996 * 109.49145 * 56.84339 * 7 6 3 34 34 H 1.09001 * 109.51164 * 296.79080 * 7 6 3 35 35 H 1.09004 * 109.49141 * 298.43729 * 8 7 6 36 36 H 1.08996 * 109.51041 * 178.37964 * 8 7 6 37 37 H 1.08999 * 109.47310 * 189.37842 * 10 9 8 38 38 H 1.09004 * 109.47035 * 309.37479 * 10 9 8 39 39 H 1.08999 * 109.47151 * 69.37651 * 10 9 8 40 40 H 0.96999 * 120.00097 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.49241 * 63.21634 * 21 6 3 42 42 H 1.09000 * 109.48583 * 303.15439 * 21 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5647 1.4444 0.1257 5 6 3.9641 0.8947 1.4966 6 7 1.6513 2.0993 -1.2552 7 6 2.4020 1.5485 -2.3921 8 6 1.9128 2.2009 -3.6873 9 7 2.0918 3.6568 -3.5973 10 6 1.7032 4.3136 -4.8525 11 6 1.3411 4.2076 -2.4603 12 1 0.2787 4.0025 -2.5925 13 6 1.5604 5.6968 -2.3871 14 1 2.5048 6.1195 -2.6967 15 6 0.5573 6.5191 -1.9195 16 7 0.7013 7.8254 -1.9690 17 14 -1.0061 5.7778 -1.2156 18 1 -0.8614 5.6206 0.2540 19 1 -2.1538 6.6742 -1.5069 20 1 -1.2462 4.4493 -1.8342 21 6 1.8304 3.5551 -1.1653 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6053 1.9815 0.8419 28 1 3.9946 0.8182 -0.6561 29 1 3.9367 2.4636 0.0206 30 1 3.6872 -0.1577 1.5609 31 1 5.0414 0.9955 1.6288 32 1 3.4483 1.4543 2.2769 33 1 2.2435 0.4715 -2.4451 34 1 3.4645 1.7535 -2.2605 35 1 0.8569 1.9728 -3.8331 36 1 2.4878 1.8152 -4.5290 37 1 1.9991 5.3621 -4.8207 38 1 2.1994 3.8213 -5.6889 39 1 0.6228 4.2446 -4.9793 40 1 -0.0046 8.4040 -1.6404 41 1 2.8862 3.7834 -1.0194 42 1 1.2550 3.9410 -0.3238 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259586205.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:42 Heat of formation + Delta-G solvation = -18.383411 kcal Electronic energy + Delta-G solvation = -18924.206128 eV Core-core repulsion = 16324.020800 eV Total energy + Delta-G solvation = -2600.185328 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.67861 -37.96083 -34.81637 -34.00579 -32.59418 -32.06859 -29.26150 -27.18348 -26.05567 -24.11192 -23.72180 -23.57465 -21.06506 -19.88396 -18.99202 -17.41748 -16.36863 -16.16695 -15.78528 -15.59538 -15.37976 -15.28747 -14.86702 -14.72610 -14.46353 -13.94343 -13.42362 -13.22496 -13.02054 -12.99762 -12.85333 -12.68282 -12.45512 -12.29154 -12.15887 -11.93157 -11.84428 -11.65122 -11.55741 -11.48289 -11.29166 -11.02655 -10.66886 -9.11692 -8.91452 -8.32655 -6.36035 1.29280 1.31909 1.42899 2.29573 2.90446 3.14059 3.36405 3.82808 4.00575 4.18723 4.28522 4.31083 4.38847 4.47421 4.48483 4.56686 4.63999 4.65872 4.70123 4.77683 4.82556 4.86522 4.92528 5.00495 5.02252 5.11501 5.16617 5.20486 5.23088 5.28308 5.35741 5.39196 5.47724 5.55459 5.58585 6.05273 6.20750 6.24747 6.46822 6.68931 6.76654 7.31165 8.83547 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021768 B = 0.008790 C = 0.007877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.002823 B = 3184.771519 C = 3553.870292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 C 0.078 3.922 4 C -0.151 4.151 5 C -0.142 4.142 6 N -0.542 5.542 7 C 0.062 3.938 8 C 0.053 3.947 9 N -0.552 5.552 10 C 0.050 3.950 11 C 0.188 3.812 12 H 0.006 0.994 13 C -0.501 4.501 14 H 0.035 0.965 15 C 0.023 3.977 16 N -0.941 5.941 17 Si 0.929 3.071 18 H -0.266 1.266 19 H -0.285 1.285 20 H -0.248 1.248 21 C 0.080 3.920 22 H 0.042 0.958 23 H 0.044 0.956 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.099 0.901 34 H 0.037 0.963 35 H 0.024 0.976 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.007 0.993 40 H 0.267 0.733 41 H 0.022 0.978 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 -18.240 3.087 18.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.142 4.142 3 C -0.030 4.030 4 C -0.190 4.190 5 C -0.199 4.199 6 N -0.266 5.266 7 C -0.066 4.066 8 C -0.075 4.075 9 N -0.277 5.277 10 C -0.098 4.098 11 C 0.080 3.920 12 H 0.023 0.977 13 C -0.540 4.540 14 H 0.054 0.946 15 C -0.176 4.176 16 N -0.581 5.581 17 Si 0.754 3.246 18 H -0.192 1.192 19 H -0.211 1.211 20 H -0.172 1.172 21 C -0.048 4.048 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.101 0.899 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.117 0.883 34 H 0.056 0.944 35 H 0.042 0.958 36 H 0.111 0.889 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.025 0.975 40 H 0.076 0.924 41 H 0.040 0.960 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.735 -18.076 3.120 18.425 hybrid contribution -0.661 0.878 0.301 1.139 sum 1.074 -17.198 3.421 17.568 Atomic orbital electron populations 1.21632 0.95902 1.01157 1.01294 1.21551 0.96096 0.93819 1.02687 1.21918 0.93453 0.96372 0.91240 1.22127 0.96915 1.00502 0.99478 1.21715 1.01185 1.01638 0.95392 1.62457 1.56390 1.03626 1.04132 1.22169 0.95671 0.99255 0.89473 1.22268 0.98984 0.87910 0.98383 1.62113 1.57708 1.03771 1.04073 1.22022 0.97080 0.99554 0.91124 1.19693 0.91643 0.92490 0.88147 0.97665 1.21010 1.00131 0.90660 1.42201 0.94629 1.25733 1.01325 0.94862 0.95685 1.70041 1.35619 1.04258 1.48206 0.86031 0.79536 0.79307 0.79770 1.19152 1.21129 1.17231 1.22156 0.98066 0.86672 0.97928 0.93839 0.93721 0.91850 0.91307 0.89917 0.91852 0.90994 0.94368 0.90871 0.92466 0.93169 0.88273 0.94431 0.95786 0.88896 0.93459 0.90242 0.97458 0.92432 0.96008 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 9.80 71.98 0.71 -2.55 16 2 C -0.10 -2.22 5.26 30.59 0.16 -2.06 16 3 C 0.08 2.18 1.75 44.92 0.08 2.26 16 4 C -0.15 -3.84 4.42 30.60 0.14 -3.70 16 5 C -0.14 -2.81 9.54 71.98 0.69 -2.12 16 6 N -0.54 -18.62 4.09 -870.52 -3.56 -22.18 16 7 C 0.06 1.88 4.68 86.31 0.40 2.28 16 8 C 0.05 1.76 5.61 86.31 0.48 2.25 16 9 N -0.55 -23.52 4.77 -900.97 -4.30 -27.82 16 10 C 0.05 2.05 9.19 127.69 1.17 3.23 16 11 C 0.19 9.12 1.52 44.17 0.07 9.18 16 12 H 0.01 0.30 5.23 -2.38 -0.01 0.28 16 13 C -0.50 -28.93 7.62 25.60 0.20 -28.74 16 14 H 0.04 2.32 8.01 -2.91 -0.02 2.29 16 15 C 0.02 1.32 5.47 84.65 0.46 1.78 16 16 N -0.94 -58.82 13.96 21.45 0.30 -58.52 16 17 Si 0.93 45.17 26.72 68.60 1.83 47.00 16 18 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 19 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 20 H -0.25 -11.67 5.84 99.48 0.58 -11.09 16 21 C 0.08 3.49 4.53 86.31 0.39 3.88 16 22 H 0.04 1.01 8.14 -2.39 -0.02 1.00 16 23 H 0.04 1.23 7.75 -2.39 -0.02 1.21 16 24 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.07 1.37 6.44 -2.39 -0.02 1.35 16 26 H 0.08 1.44 6.51 -2.39 -0.02 1.42 16 27 H 0.06 1.92 7.95 -2.39 -0.02 1.90 16 28 H 0.07 1.69 6.76 -2.39 -0.02 1.68 16 29 H 0.04 1.18 6.71 -2.39 -0.02 1.17 16 30 H 0.07 1.18 6.78 -2.39 -0.02 1.16 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.10 2.40 6.41 -2.39 -0.02 2.38 16 34 H 0.04 1.18 6.54 -2.39 -0.02 1.16 16 35 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.09 2.57 8.08 -2.39 -0.02 2.55 16 37 H 0.05 2.20 7.19 -2.39 -0.02 2.18 16 38 H 0.08 2.59 8.04 -2.38 -0.02 2.57 16 39 H 0.01 0.28 8.13 -2.39 -0.02 0.26 16 40 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 41 H 0.02 1.00 6.80 -2.39 -0.02 0.98 16 42 H 0.05 2.15 7.02 -2.39 -0.02 2.14 16 Total: -1.00 -65.14 308.34 0.05 -65.09 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 0.84 Total: 10.76 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 4.94 Total: -14.33 kcal Atomic # 7 Polarization: -100.96 SS G_CDS: -7.56 Total: -108.52 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.83 Total: 47.00 kcal Total: -65.14 0.05 -65.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259586205.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.706 kcal (2) G-P(sol) polarization free energy of solvation -65.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds