Wall clock time and date at job start Mon Mar 30 2020 05:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46683 * 2 1 4 4 H 1.08997 * 109.47706 * 55.73057 * 3 2 1 5 5 C 1.53003 * 109.46774 * 175.73322 * 3 2 1 6 6 H 1.09003 * 109.47261 * 178.51371 * 5 3 2 7 7 C 1.52993 * 109.47414 * 58.50966 * 5 3 2 8 8 C 1.50706 * 109.46990 * 298.50808 * 5 3 2 9 9 H 1.07995 * 119.99440 * 0.02562 * 8 5 3 10 10 C 1.37875 * 119.99860 * 180.02562 * 8 5 3 11 11 N 1.31507 * 120.00095 * 0.02562 * 10 8 5 12 12 Si 1.86799 * 119.99928 * 180.02562 * 10 8 5 13 13 H 1.48499 * 109.46960 * 89.99861 * 12 10 8 14 14 H 1.48496 * 109.47354 * 210.00065 * 12 10 8 15 15 H 1.48506 * 109.46978 * 329.99869 * 12 10 8 16 16 N 1.46903 * 109.47326 * 295.72764 * 3 2 1 17 17 C 1.46951 * 110.99931 * 92.46524 * 16 3 2 18 18 C 1.53056 * 109.36705 * 176.81240 * 17 16 3 19 19 N 1.46957 * 109.36078 * 58.40422 * 18 17 16 20 20 C 1.46897 * 111.00252 * 176.81395 * 19 18 17 21 21 C 1.46957 * 110.88174 * 300.67900 * 19 18 17 22 22 C 1.46957 * 110.99763 * 328.67031 * 16 3 2 23 23 H 1.09003 * 109.47192 * 68.40560 * 1 2 3 24 24 H 1.09003 * 109.46932 * 188.40194 * 1 2 3 25 25 H 1.08996 * 109.47691 * 308.39881 * 1 2 3 26 26 H 1.08997 * 109.47223 * 239.99532 * 2 1 3 27 27 H 1.08998 * 109.46997 * 119.99800 * 2 1 3 28 28 H 1.09003 * 109.47054 * 69.35627 * 7 5 3 29 29 H 1.08998 * 109.47514 * 189.35177 * 7 5 3 30 30 H 1.08993 * 109.47472 * 309.35764 * 7 5 3 31 31 H 0.97008 * 120.00511 * 180.02562 * 11 10 8 32 32 H 1.09005 * 109.49065 * 296.78257 * 17 16 3 33 33 H 1.09002 * 109.48750 * 56.84723 * 17 16 3 34 34 H 1.08998 * 109.48612 * 298.43853 * 18 17 16 35 35 H 1.08997 * 109.50581 * 178.37719 * 18 17 16 36 36 H 1.08990 * 109.47490 * 183.79907 * 20 19 18 37 37 H 1.09003 * 109.46798 * 303.80369 * 20 19 18 38 38 H 1.09004 * 109.47272 * 63.79509 * 20 19 18 39 39 H 1.08997 * 109.49095 * 299.35842 * 21 19 18 40 40 H 1.09001 * 109.51192 * 179.29709 * 21 19 18 41 41 H 1.09001 * 109.49197 * 303.15258 * 22 16 3 42 42 H 1.09005 * 109.48944 * 63.21901 * 22 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6154 1.9780 0.8492 5 6 3.5661 1.4438 0.1073 6 1 3.9313 2.4705 0.0808 7 6 4.1606 0.6606 -1.0648 8 6 3.9790 0.7973 1.4045 9 1 3.2280 0.4226 2.0841 10 6 5.3156 0.6843 1.7236 11 7 6.2301 1.1411 0.8963 12 14 5.8274 -0.1178 3.3311 13 1 6.0096 -1.5764 3.1205 14 1 7.1051 0.4785 3.7970 15 1 4.7744 0.1070 4.3538 16 7 1.6362 2.1046 -1.2477 17 6 0.3539 2.8030 -1.0823 18 6 0.0087 3.5437 -2.3764 19 7 -0.0582 2.5816 -3.4853 20 6 -0.4618 3.2436 -4.7330 21 6 1.2241 1.8831 -3.6508 22 6 1.5693 1.1425 -2.3566 23 1 -0.3634 0.3782 -0.9556 24 1 -0.3633 -1.0167 0.1502 25 1 -0.3634 0.6383 0.8053 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 4.0041 1.2160 -1.9895 29 1 5.2290 0.5189 -0.9025 30 1 3.6721 -0.3110 -1.1375 31 1 7.1705 1.0612 1.1205 32 1 -0.4288 2.0782 -0.8582 33 1 0.4326 3.5186 -0.2637 34 1 0.7776 4.2873 -2.5860 35 1 -0.9559 4.0390 -2.2661 36 1 -0.5689 2.4986 -5.5214 37 1 -1.4138 3.7528 -4.5826 38 1 0.2976 3.9706 -5.0208 39 1 2.0068 2.6078 -3.8749 40 1 1.1459 1.1676 -4.4694 41 1 2.5341 0.6474 -2.4672 42 1 0.8004 0.3988 -2.1470 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259784622.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:24 Heat of formation + Delta-G solvation = 18.713817 kcal Electronic energy + Delta-G solvation = -18939.166482 eV Core-core repulsion = 16340.589810 eV Total energy + Delta-G solvation = -2598.576672 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.56657 -36.69335 -33.53992 -31.65529 -30.70550 -30.14000 -27.78844 -25.49741 -24.67309 -23.37748 -22.73495 -21.27192 -19.41749 -18.56566 -16.11054 -15.60888 -15.10234 -14.89571 -14.66912 -14.57808 -14.28112 -13.81099 -13.17804 -12.63345 -12.43821 -12.33045 -12.20701 -11.69771 -11.52236 -11.45240 -11.02522 -10.90190 -10.83287 -10.67541 -10.66118 -10.46731 -10.38711 -10.14341 -9.79870 -9.33672 -9.07712 -8.62500 -8.25737 -8.20060 -7.36930 -5.89919 -3.96538 3.33663 3.40726 3.43309 4.09017 4.43568 4.64074 5.16470 5.18534 5.39738 5.42332 5.46227 5.55946 5.64837 5.72643 5.73361 5.79002 5.82172 5.89215 5.90094 6.05285 6.20483 6.29550 6.31726 6.39783 6.47919 6.62377 6.76941 6.93756 6.97465 7.10516 7.14974 7.17293 7.33803 7.48255 7.76404 7.83410 7.92263 8.18404 8.31455 8.57959 9.07896 9.67385 11.15007 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.039721 B = 0.006384 C = 0.006024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.744574 B = 4385.095205 C = 4646.705330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.146 4.146 3 C 0.096 3.904 4 H 0.059 0.941 5 C 0.060 3.940 6 H 0.029 0.971 7 C -0.139 4.139 8 C -0.508 4.508 9 H 0.054 0.946 10 C 0.061 3.939 11 N -0.889 5.889 12 Si 0.886 3.114 13 H -0.282 1.282 14 H -0.288 1.288 15 H -0.275 1.275 16 N -0.527 5.527 17 C 0.045 3.955 18 C 0.059 3.941 19 N -0.545 5.545 20 C 0.026 3.974 21 C 0.056 3.944 22 C 0.035 3.965 23 H 0.059 0.941 24 H 0.042 0.958 25 H 0.046 0.954 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.018 0.982 29 H 0.078 0.922 30 H 0.021 0.979 31 H 0.258 0.742 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.039 0.961 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.023 0.977 39 H 0.039 0.961 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.490 1.714 -7.722 13.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.184 4.184 3 C -0.011 4.011 4 H 0.078 0.922 5 C 0.041 3.959 6 H 0.048 0.952 7 C -0.196 4.196 8 C -0.547 4.547 9 H 0.072 0.928 10 C -0.140 4.140 11 N -0.528 5.528 12 Si 0.714 3.286 13 H -0.209 1.209 14 H -0.214 1.214 15 H -0.200 1.200 16 N -0.251 5.251 17 C -0.083 4.083 18 C -0.070 4.070 19 N -0.270 5.270 20 C -0.122 4.122 21 C -0.072 4.072 22 C -0.092 4.092 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.037 0.963 29 H 0.096 0.904 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.041 0.959 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.116 0.884 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.293 1.747 -7.731 13.797 hybrid contribution 0.333 -0.401 0.872 1.016 sum -10.960 1.346 -6.859 12.999 Atomic orbital electron populations 1.22181 0.97922 1.00498 1.01230 1.22178 0.93390 0.99576 1.03306 1.21942 0.99485 0.91074 0.88596 0.92239 1.18571 0.86950 0.96643 0.93730 0.95245 1.21964 1.04005 0.97141 0.96489 1.21215 0.91585 1.38320 1.03568 0.92821 1.24924 0.96817 0.95710 0.96524 1.69905 1.00448 1.46676 1.35751 0.86695 0.77987 0.79497 0.84379 1.20871 1.21377 1.20048 1.62405 1.27340 1.29374 1.06018 1.22371 0.92004 0.97843 0.96089 1.22164 0.99944 0.93618 0.91240 1.62187 1.30910 1.29023 1.04917 1.22320 0.99874 0.97968 0.92087 1.22239 0.89175 0.97498 0.98313 1.22710 1.02418 0.94331 0.89772 0.92243 0.93862 0.93441 0.91614 0.90615 0.96314 0.90354 0.96032 0.93221 0.93554 0.91006 0.94296 0.91202 0.91707 0.91811 0.95861 0.94278 0.91138 0.88359 0.93473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 8.15 37.16 0.30 -2.25 16 2 C -0.15 -2.74 4.22 -26.73 -0.11 -2.85 16 3 C 0.10 1.97 1.94 -67.71 -0.13 1.84 16 4 H 0.06 1.26 7.64 -51.93 -0.40 0.86 16 5 C 0.06 1.48 2.32 -91.77 -0.21 1.27 16 6 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 7 C -0.14 -3.31 7.36 37.15 0.27 -3.04 16 8 C -0.51 -13.67 7.78 -34.44 -0.27 -13.94 16 9 H 0.05 1.42 6.83 -52.49 -0.36 1.06 16 10 C 0.06 1.68 5.27 -17.82 -0.09 1.59 16 11 N -0.89 -25.56 11.30 55.43 0.63 -24.93 16 12 Si 0.89 21.29 29.54 -169.99 -5.02 16.26 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 16 N -0.53 -9.60 4.40 -226.48 -1.00 -10.59 16 17 C 0.05 0.71 5.19 -3.77 -0.02 0.69 16 18 C 0.06 0.81 5.62 -3.76 -0.02 0.79 16 19 N -0.55 -7.51 4.97 -242.75 -1.21 -8.72 16 20 C 0.03 0.29 9.60 60.06 0.58 0.86 16 21 C 0.06 0.82 5.62 -3.76 -0.02 0.80 16 22 C 0.04 0.59 3.74 -3.76 -0.01 0.58 16 23 H 0.06 0.93 4.34 -51.93 -0.23 0.70 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.73 8.04 -51.93 -0.42 0.31 16 26 H 0.07 1.24 4.58 -51.93 -0.24 1.00 16 27 H 0.08 1.56 6.59 -51.93 -0.34 1.22 16 28 H 0.02 0.41 6.27 -51.93 -0.33 0.08 16 29 H 0.08 2.11 5.88 -51.93 -0.31 1.81 16 30 H 0.02 0.48 5.71 -51.93 -0.30 0.18 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.05 0.72 4.99 -51.93 -0.26 0.46 16 33 H 0.07 1.11 7.98 -51.93 -0.41 0.70 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 38 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.10 1.78 4.13 -51.93 -0.21 1.56 16 42 H 0.05 0.79 4.55 -51.93 -0.24 0.55 16 LS Contribution 297.42 15.07 4.48 4.48 Total: -1.00 -27.92 297.42 -8.82 -36.75 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.97 Total: 0.40 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 0.26 Total: -13.65 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: -1.58 Total: -44.24 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.92 -8.82 -36.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259784622.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.463 kcal (2) G-P(sol) polarization free energy of solvation -27.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds