Wall clock time and date at job start Mon Mar 30 2020 04:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 110.99908 * 2 1 4 4 H 1.09000 * 109.53827 * 202.68883 * 3 2 1 5 5 C 1.53130 * 109.50235 * 322.78893 * 3 2 1 6 6 C 1.53123 * 109.15929 * 177.59674 * 5 3 2 7 7 C 1.53039 * 109.27496 * 302.33915 * 6 5 3 8 8 N 1.46847 * 109.52171 * 59.18273 * 7 6 5 9 9 C 1.46907 * 111.00056 * 174.15580 * 8 7 6 10 10 C 1.46851 * 111.20075 * 298.25681 * 8 7 6 11 11 C 1.46900 * 110.99909 * 236.05024 * 2 1 3 12 12 C 1.52997 * 109.47145 * 306.22063 * 11 2 1 13 13 C 1.53006 * 109.47163 * 66.21822 * 11 2 1 14 14 C 1.50701 * 109.47211 * 186.21749 * 11 2 1 15 15 H 1.08006 * 119.99732 * 239.67256 * 14 11 2 16 16 C 1.37874 * 120.00062 * 59.67022 * 14 11 2 17 17 N 1.31508 * 120.00155 * 181.89108 * 16 14 11 18 18 Si 1.86804 * 119.99638 * 1.89520 * 16 14 11 19 19 H 1.48497 * 109.47007 * 91.48644 * 18 16 14 20 20 H 1.48503 * 109.46999 * 211.48226 * 18 16 14 21 21 H 1.48495 * 109.47259 * 331.48102 * 18 16 14 22 22 H 1.08999 * 109.47822 * 60.00042 * 1 2 3 23 23 H 1.09000 * 109.47239 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47399 * 299.99531 * 1 2 3 25 25 H 1.08990 * 109.52309 * 57.68819 * 5 3 2 26 26 H 1.08998 * 109.51924 * 297.49713 * 5 3 2 27 27 H 1.08997 * 109.50328 * 62.27814 * 6 5 3 28 28 H 1.08994 * 109.50010 * 182.40437 * 6 5 3 29 29 H 1.09001 * 109.46184 * 179.19592 * 7 6 5 30 30 H 1.09003 * 109.46627 * 299.17988 * 7 6 5 31 31 H 1.09006 * 109.46581 * 56.04906 * 9 8 7 32 32 H 1.08993 * 109.47104 * 176.04511 * 9 8 7 33 33 H 1.08999 * 109.47080 * 296.05081 * 9 8 7 34 34 H 1.09001 * 109.45993 * 181.76168 * 10 8 7 35 35 H 1.09004 * 109.45900 * 301.72368 * 10 8 7 36 36 H 1.09003 * 109.47260 * 67.12601 * 12 11 2 37 37 H 1.08997 * 109.46954 * 187.12921 * 12 11 2 38 38 H 1.09004 * 109.46923 * 307.12934 * 12 11 2 39 39 H 1.09004 * 109.46836 * 70.16797 * 13 11 2 40 40 H 1.08997 * 109.47033 * 190.16990 * 13 11 2 41 41 H 1.09001 * 109.46970 * 310.17182 * 13 11 2 42 42 H 0.97003 * 119.99998 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 3.0108 1.3721 -0.3962 5 6 1.1054 2.2607 -0.8729 6 6 1.6259 3.6997 -0.8193 7 6 1.6459 4.1759 0.6350 8 7 2.5111 3.2935 1.4283 9 6 2.6647 3.8001 2.7987 10 6 2.0047 1.9151 1.4305 11 6 1.9954 -0.7659 -1.1376 12 6 1.3824 -2.1677 -1.1361 13 6 1.6351 -0.0532 -2.4428 14 6 3.4941 -0.8728 -1.0209 15 1 4.1262 -0.4771 -1.8022 16 6 4.0583 -1.4756 0.0833 17 7 5.3665 -1.5358 0.2031 18 14 2.9643 -2.2069 1.4092 19 1 2.7090 -3.6381 1.1065 20 1 3.6395 -2.0924 2.7269 21 1 1.6748 -1.4715 1.4483 22 1 -0.3635 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 0.0817 2.2294 -0.5000 26 1 1.1302 1.9024 -1.9021 27 1 2.6355 3.7369 -1.2284 28 1 0.9713 4.3454 -1.4046 29 1 2.0295 5.1952 0.6781 30 1 0.6339 4.1512 1.0392 31 1 1.6815 3.9205 3.2538 32 1 3.2518 3.0925 3.3840 33 1 3.1745 4.7633 2.7750 34 1 2.6489 1.2926 2.0515 35 1 0.9910 1.9013 1.8310 36 1 0.3153 -2.0979 -1.3470 37 1 1.8649 -2.7761 -1.9010 38 1 1.5303 -2.6278 -0.1590 39 1 2.2139 0.8667 -2.5261 40 1 1.8632 -0.7038 -3.2870 41 1 0.5715 0.1853 -2.4448 42 1 5.7634 -1.9596 0.9801 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259816902.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:04 Heat of formation + Delta-G solvation = 36.648660 kcal Electronic energy + Delta-G solvation = -19576.058048 eV Core-core repulsion = 16978.259089 eV Total energy + Delta-G solvation = -2597.798958 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.50711 -37.08233 -33.15010 -32.01531 -31.05332 -28.71192 -27.12373 -26.05966 -25.74116 -23.89832 -22.35146 -21.57977 -18.95476 -18.46158 -16.48972 -15.58852 -15.01337 -14.90125 -14.56160 -14.26371 -13.79120 -13.53690 -12.93727 -12.76555 -12.61531 -12.33291 -12.17150 -11.93830 -11.73297 -11.36169 -11.31687 -10.94874 -10.86677 -10.78410 -10.64064 -10.21321 -10.11056 -9.95925 -9.79034 -9.38730 -9.21144 -8.91650 -8.39228 -7.96318 -6.84613 -5.93840 -4.00046 3.51710 3.64242 3.90172 4.20575 4.72996 4.95572 5.23131 5.29786 5.37040 5.50504 5.56902 5.65504 5.71896 5.86591 5.96455 5.98833 6.03760 6.05811 6.08132 6.11483 6.14868 6.24897 6.29834 6.38231 6.40781 6.50408 6.51391 6.53576 6.70076 6.77051 6.88663 6.94188 7.14433 7.30667 7.43354 7.51212 7.79451 8.14352 8.37593 8.68178 9.05928 9.72929 11.16407 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023015 B = 0.011123 C = 0.009351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.304392 B = 2516.790250 C = 2993.745491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.519 5.519 3 C 0.097 3.903 4 H 0.109 0.891 5 C -0.166 4.166 6 C -0.113 4.113 7 C 0.060 3.940 8 N -0.541 5.541 9 C 0.029 3.971 10 C 0.073 3.927 11 C 0.200 3.800 12 C -0.139 4.139 13 C -0.161 4.161 14 C -0.508 4.508 15 H 0.070 0.930 16 C 0.088 3.912 17 N -0.899 5.899 18 Si 0.871 3.129 19 H -0.302 1.302 20 H -0.314 1.314 21 H -0.198 1.198 22 H 0.023 0.977 23 H 0.058 0.942 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.024 0.976 31 H 0.018 0.982 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.020 0.980 36 H 0.029 0.971 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.033 0.967 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.923 8.482 1.037 13.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.243 5.243 3 C -0.012 4.012 4 H 0.127 0.873 5 C -0.204 4.204 6 C -0.151 4.151 7 C -0.068 4.068 8 N -0.266 5.266 9 C -0.119 4.119 10 C -0.055 4.055 11 C 0.113 3.887 12 C -0.196 4.196 13 C -0.219 4.219 14 C -0.546 4.546 15 H 0.088 0.912 16 C -0.115 4.115 17 N -0.536 5.536 18 Si 0.702 3.298 19 H -0.230 1.230 20 H -0.243 1.243 21 H -0.121 1.121 22 H 0.042 0.958 23 H 0.077 0.923 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.036 0.964 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.039 0.961 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.170 8.184 1.353 12.366 hybrid contribution -1.436 -0.090 0.501 1.523 sum -10.606 8.094 1.854 13.470 Atomic orbital electron populations 1.22483 0.91465 1.00698 0.98885 1.63086 1.04364 1.11841 1.44985 1.21474 1.00772 0.86342 0.92609 0.87313 1.22782 0.99597 0.95554 1.02483 1.21531 1.01802 0.96638 0.95174 1.22047 0.94149 0.96200 0.94452 1.61807 1.49953 1.02732 1.12085 1.22308 0.99457 1.00686 0.89489 1.22060 0.97146 0.87526 0.98800 1.19104 0.95693 0.89114 0.84811 1.22201 0.97563 0.98862 1.00989 1.22555 0.98361 1.00899 1.00111 1.20723 0.87796 1.39242 1.06814 0.91187 1.24942 0.94563 0.94333 0.97703 1.69953 1.10447 1.43650 1.29523 0.87293 0.84999 0.77984 0.79525 1.23042 1.24278 1.12054 0.95836 0.92331 0.93546 0.92817 0.90154 0.91060 0.92485 0.91540 0.95772 0.96377 0.91392 0.91815 0.90452 0.96147 0.95203 0.92643 0.93468 0.92518 0.93602 0.94783 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 7.30 60.06 0.44 0.67 16 2 N -0.52 -10.72 1.38 -220.46 -0.30 -11.02 16 3 C 0.10 1.91 1.74 -67.63 -0.12 1.79 16 4 H 0.11 2.57 6.53 -51.93 -0.34 2.23 16 5 C -0.17 -2.71 3.76 -26.60 -0.10 -2.81 16 6 C -0.11 -1.65 6.09 -26.65 -0.16 -1.81 16 7 C 0.06 0.85 5.46 -3.83 -0.02 0.83 16 8 N -0.54 -9.01 4.91 -242.95 -1.19 -10.20 16 9 C 0.03 0.40 9.62 60.07 0.58 0.98 16 10 C 0.07 1.35 4.95 -3.83 -0.02 1.33 16 11 C 0.20 4.42 0.28 -132.75 -0.04 4.38 16 12 C -0.14 -2.94 7.13 37.16 0.27 -2.67 16 13 C -0.16 -3.13 6.62 37.16 0.25 -2.88 16 14 C -0.51 -13.71 7.13 -34.44 -0.25 -13.96 16 15 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 16 C 0.09 2.52 5.45 -17.82 -0.10 2.42 16 17 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 18 Si 0.87 22.02 23.75 -169.99 -4.04 17.98 16 19 H -0.30 -7.72 7.04 56.52 0.40 -7.32 16 20 H -0.31 -8.27 7.11 56.52 0.40 -7.87 16 21 H -0.20 -4.63 4.84 56.52 0.27 -4.35 16 22 H 0.02 0.39 4.69 -51.93 -0.24 0.14 16 23 H 0.06 1.02 6.14 -51.93 -0.32 0.70 16 24 H 0.05 0.77 7.25 -51.92 -0.38 0.39 16 25 H 0.05 0.85 6.29 -51.93 -0.33 0.52 16 26 H 0.08 1.34 4.21 -51.93 -0.22 1.12 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.96 8.02 -51.93 -0.42 0.54 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.61 8.04 -51.93 -0.42 1.19 16 35 H 0.02 0.36 7.29 -51.93 -0.38 -0.01 16 36 H 0.03 0.54 6.68 -51.93 -0.35 0.19 16 37 H 0.05 1.17 8.13 -51.93 -0.42 0.75 16 38 H 0.05 1.06 3.44 -51.93 -0.18 0.88 16 39 H 0.06 1.12 6.03 -51.93 -0.31 0.81 16 40 H 0.04 0.88 8.11 -51.93 -0.42 0.45 16 41 H 0.03 0.59 5.63 -51.93 -0.29 0.30 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 290.13 15.07 4.37 4.37 Total: -1.00 -29.38 290.13 -6.89 -36.28 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.23 Total: 1.12 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 0.73 Total: -11.73 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -0.72 Total: -48.03 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.04 Total: 17.98 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.38 -6.89 -36.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259816902.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.925 kcal (2) G-P(sol) polarization free energy of solvation -29.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds