Wall clock time and date at job start Mon Mar 30 2020 04:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 110.99908 * 2 1 4 4 H 1.09000 * 109.53827 * 202.68883 * 3 2 1 5 5 C 1.53130 * 109.50235 * 322.78893 * 3 2 1 6 6 C 1.53123 * 109.15929 * 177.59674 * 5 3 2 7 7 C 1.53039 * 109.27496 * 302.33915 * 6 5 3 8 8 N 1.46847 * 109.52171 * 59.18273 * 7 6 5 9 9 C 1.46907 * 111.00056 * 174.15580 * 8 7 6 10 10 C 1.46851 * 111.20075 * 298.25681 * 8 7 6 11 11 C 1.46900 * 110.99909 * 236.05024 * 2 1 3 12 12 C 1.52997 * 109.47145 * 306.22063 * 11 2 1 13 13 C 1.53006 * 109.47163 * 66.21822 * 11 2 1 14 14 C 1.50701 * 109.47211 * 186.21749 * 11 2 1 15 15 H 1.08006 * 119.99732 * 239.67256 * 14 11 2 16 16 C 1.37874 * 120.00062 * 59.67022 * 14 11 2 17 17 N 1.31508 * 120.00155 * 181.89108 * 16 14 11 18 18 Si 1.86804 * 119.99638 * 1.89520 * 16 14 11 19 19 H 1.48497 * 109.47007 * 91.48644 * 18 16 14 20 20 H 1.48503 * 109.46999 * 211.48226 * 18 16 14 21 21 H 1.48495 * 109.47259 * 331.48102 * 18 16 14 22 22 H 1.08999 * 109.47822 * 60.00042 * 1 2 3 23 23 H 1.09000 * 109.47239 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47399 * 299.99531 * 1 2 3 25 25 H 1.08990 * 109.52309 * 57.68819 * 5 3 2 26 26 H 1.08998 * 109.51924 * 297.49713 * 5 3 2 27 27 H 1.08997 * 109.50328 * 62.27814 * 6 5 3 28 28 H 1.08994 * 109.50010 * 182.40437 * 6 5 3 29 29 H 1.09001 * 109.46184 * 179.19592 * 7 6 5 30 30 H 1.09003 * 109.46627 * 299.17988 * 7 6 5 31 31 H 1.09006 * 109.46581 * 56.04906 * 9 8 7 32 32 H 1.08993 * 109.47104 * 176.04511 * 9 8 7 33 33 H 1.08999 * 109.47080 * 296.05081 * 9 8 7 34 34 H 1.09001 * 109.45993 * 181.76168 * 10 8 7 35 35 H 1.09004 * 109.45900 * 301.72368 * 10 8 7 36 36 H 1.09003 * 109.47260 * 67.12601 * 12 11 2 37 37 H 1.08997 * 109.46954 * 187.12921 * 12 11 2 38 38 H 1.09004 * 109.46923 * 307.12934 * 12 11 2 39 39 H 1.09004 * 109.46836 * 70.16797 * 13 11 2 40 40 H 1.08997 * 109.47033 * 190.16990 * 13 11 2 41 41 H 1.09001 * 109.46970 * 310.17182 * 13 11 2 42 42 H 0.97003 * 119.99998 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 3.0108 1.3721 -0.3962 5 6 1.1054 2.2607 -0.8729 6 6 1.6259 3.6997 -0.8193 7 6 1.6459 4.1759 0.6350 8 7 2.5111 3.2935 1.4283 9 6 2.6647 3.8001 2.7987 10 6 2.0047 1.9151 1.4305 11 6 1.9954 -0.7659 -1.1376 12 6 1.3824 -2.1677 -1.1361 13 6 1.6351 -0.0532 -2.4428 14 6 3.4941 -0.8728 -1.0209 15 1 4.1262 -0.4771 -1.8022 16 6 4.0583 -1.4756 0.0833 17 7 5.3665 -1.5358 0.2031 18 14 2.9643 -2.2069 1.4092 19 1 2.7090 -3.6381 1.1065 20 1 3.6395 -2.0924 2.7269 21 1 1.6748 -1.4715 1.4483 22 1 -0.3635 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 0.0817 2.2294 -0.5000 26 1 1.1302 1.9024 -1.9021 27 1 2.6355 3.7369 -1.2284 28 1 0.9713 4.3454 -1.4046 29 1 2.0295 5.1952 0.6781 30 1 0.6339 4.1512 1.0392 31 1 1.6815 3.9205 3.2538 32 1 3.2518 3.0925 3.3840 33 1 3.1745 4.7633 2.7750 34 1 2.6489 1.2926 2.0515 35 1 0.9910 1.9013 1.8310 36 1 0.3153 -2.0979 -1.3470 37 1 1.8649 -2.7761 -1.9010 38 1 1.5303 -2.6278 -0.1590 39 1 2.2139 0.8667 -2.5261 40 1 1.8632 -0.7038 -3.2870 41 1 0.5715 0.1853 -2.4448 42 1 5.7634 -1.9596 0.9801 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259816902.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:04 Heat of formation + Delta-G solvation = 16.426589 kcal Electronic energy + Delta-G solvation = -19576.934942 eV Core-core repulsion = 16978.259089 eV Total energy + Delta-G solvation = -2598.675853 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.98693 -38.52277 -34.83663 -33.71353 -32.65954 -30.18107 -28.62255 -27.69884 -27.13828 -25.70734 -23.65279 -22.92322 -20.51102 -20.14548 -18.33935 -17.03863 -16.81289 -16.52576 -15.89574 -15.54905 -15.17275 -14.98694 -14.70472 -14.52201 -14.21822 -13.86232 -13.52543 -13.32585 -13.14779 -12.85300 -12.75410 -12.50002 -12.38688 -12.21931 -12.07142 -11.96959 -11.89663 -11.53249 -11.39648 -11.01443 -10.90519 -10.79332 -10.54027 -9.19094 -8.45098 -8.17030 -6.24044 1.45869 1.56238 1.87164 2.60212 2.90567 3.23059 3.64521 4.00225 4.05306 4.14598 4.30365 4.44887 4.48302 4.52545 4.53974 4.57984 4.67500 4.71061 4.71741 4.79011 4.81123 4.88853 4.95760 4.98836 4.98940 5.04108 5.09160 5.11888 5.19001 5.27719 5.36089 5.47930 5.57963 5.65702 5.83382 6.14934 6.24201 6.28160 6.62523 6.76621 6.96783 7.52063 8.97226 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023015 B = 0.011123 C = 0.009351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.304392 B = 2516.790250 C = 2993.745491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.539 5.539 3 C 0.102 3.898 4 H 0.056 0.944 5 C -0.157 4.157 6 C -0.111 4.111 7 C 0.061 3.939 8 N -0.566 5.566 9 C 0.030 3.970 10 C 0.082 3.918 11 C 0.199 3.801 12 C -0.138 4.138 13 C -0.152 4.152 14 C -0.495 4.495 15 H 0.023 0.977 16 C 0.033 3.967 17 N -0.954 5.954 18 Si 0.926 3.074 19 H -0.303 1.303 20 H -0.334 1.334 21 H -0.161 1.161 22 H 0.042 0.958 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.038 0.962 31 H 0.034 0.966 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.043 0.957 35 H 0.035 0.965 36 H 0.068 0.932 37 H 0.047 0.953 38 H 0.035 0.965 39 H 0.045 0.955 40 H 0.043 0.957 41 H 0.065 0.935 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.740 9.839 1.220 16.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.263 5.263 3 C -0.007 4.007 4 H 0.074 0.926 5 C -0.195 4.195 6 C -0.150 4.150 7 C -0.067 4.067 8 N -0.291 5.291 9 C -0.118 4.118 10 C -0.047 4.047 11 C 0.111 3.889 12 C -0.195 4.195 13 C -0.210 4.210 14 C -0.533 4.533 15 H 0.042 0.958 16 C -0.165 4.165 17 N -0.595 5.595 18 Si 0.756 3.244 19 H -0.232 1.232 20 H -0.265 1.265 21 H -0.082 1.082 22 H 0.060 0.940 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.021 9.562 1.517 16.226 hybrid contribution -0.195 -0.418 0.354 0.582 sum -13.216 9.144 1.871 16.180 Atomic orbital electron populations 1.22574 0.88650 1.01814 1.00524 1.62771 1.06873 1.12477 1.44150 1.21299 0.98706 0.86887 0.93848 0.92570 1.22652 0.99630 0.95842 1.01388 1.21540 1.01260 0.96120 0.96058 1.22116 0.94516 0.96465 0.93563 1.61773 1.51061 1.02303 1.13997 1.22339 1.00371 1.01033 0.88071 1.21839 0.97067 0.88448 0.97320 1.18977 0.92371 0.90714 0.86862 1.22141 0.99898 0.97416 1.00087 1.22437 1.00074 1.00037 0.98483 1.20990 0.90749 1.36859 1.04695 0.95829 1.25709 0.95377 0.95320 1.00106 1.70109 1.12574 1.46336 1.30442 0.86526 0.84749 0.77279 0.75831 1.23227 1.26484 1.08176 0.94001 0.91528 0.91995 0.90916 0.90494 0.93131 0.89410 0.89631 0.94392 0.94777 0.92584 0.90030 0.93795 0.94697 0.91298 0.93392 0.94672 0.93636 0.93759 0.91612 0.93473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.37 7.30 127.69 0.93 1.30 16 2 N -0.54 -21.09 1.38 -851.41 -1.18 -22.26 16 3 C 0.10 3.89 1.74 44.97 0.08 3.97 16 4 H 0.06 2.75 6.53 -2.39 -0.02 2.73 16 5 C -0.16 -4.67 3.76 30.68 0.12 -4.55 16 6 C -0.11 -2.94 6.09 30.65 0.19 -2.75 16 7 C 0.06 1.54 5.46 86.33 0.47 2.01 16 8 N -0.57 -17.99 4.91 -922.55 -4.53 -22.52 16 9 C 0.03 0.77 9.62 127.69 1.23 2.00 16 10 C 0.08 2.94 4.95 86.32 0.43 3.37 16 11 C 0.20 8.56 0.28 2.78 0.00 8.56 16 12 C -0.14 -5.50 7.13 71.98 0.51 -4.98 16 13 C -0.15 -5.63 6.62 71.98 0.48 -5.16 16 14 C -0.49 -27.69 7.13 25.60 0.18 -27.51 16 15 H 0.02 1.49 7.99 -2.91 -0.02 1.47 16 16 C 0.03 1.93 5.45 84.65 0.46 2.39 16 17 N -0.95 -61.88 13.96 21.44 0.30 -61.58 16 18 Si 0.93 46.42 23.75 68.60 1.63 48.04 16 19 H -0.30 -15.13 7.04 99.48 0.70 -14.43 16 20 H -0.33 -17.73 7.11 99.48 0.71 -17.02 16 21 H -0.16 -7.06 4.84 99.48 0.48 -6.58 16 22 H 0.04 1.13 4.69 -2.39 -0.01 1.12 16 23 H 0.07 1.94 6.14 -2.39 -0.01 1.92 16 24 H 0.06 1.72 7.25 -2.38 -0.02 1.70 16 25 H 0.07 1.92 6.29 -2.39 -0.02 1.91 16 26 H 0.08 2.35 4.21 -2.39 -0.01 2.34 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.09 1.86 8.12 -2.39 -0.02 1.84 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.06 1.55 8.02 -2.39 -0.02 1.54 16 33 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.04 1.84 8.04 -2.39 -0.02 1.82 16 35 H 0.03 1.14 7.29 -2.38 -0.02 1.12 16 36 H 0.07 2.21 6.68 -2.39 -0.02 2.19 16 37 H 0.05 1.95 8.13 -2.39 -0.02 1.93 16 38 H 0.03 1.48 3.44 -2.38 -0.01 1.47 16 39 H 0.04 1.77 6.03 -2.38 -0.01 1.76 16 40 H 0.04 1.63 8.11 -2.39 -0.02 1.61 16 41 H 0.07 2.02 5.63 -2.39 -0.01 2.00 16 42 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 Total: -1.00 -67.36 290.13 2.05 -65.32 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.75 Total: 14.35 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 5.08 Total: -21.35 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -5.41 Total: -106.36 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 1.63 Total: 48.04 kcal Total: -67.36 2.05 -65.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259816902.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.744 kcal (2) G-P(sol) polarization free energy of solvation -67.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds