Wall clock time and date at job start Mon Mar 30 2020 05:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47358 * 2 1 4 4 H 1.08999 * 109.72743 * 303.77659 * 3 2 1 5 5 C 1.50777 * 109.73538 * 64.47046 * 3 2 1 6 6 N 1.47746 * 111.91973 * 214.26320 * 5 3 2 7 7 C 1.46900 * 111.00025 * 84.93522 * 6 5 3 8 8 C 1.48067 * 113.78562 * 318.87520 * 6 5 3 9 9 C 1.50749 * 112.93338 * 318.28647 * 8 6 5 10 10 C 1.54511 * 108.94183 * 92.65607 * 9 8 6 11 11 N 1.40084 * 111.51310 * 283.98099 * 10 9 8 12 12 C 1.46894 * 110.99911 * 188.14382 * 11 10 9 13 13 H 1.09000 * 109.47190 * 178.43057 * 12 11 10 14 14 C 1.53002 * 109.47447 * 58.42949 * 12 11 10 15 15 C 1.50708 * 109.47167 * 298.42966 * 12 11 10 16 16 H 1.08002 * 119.99572 * 5.83122 * 15 12 11 17 17 C 1.37874 * 120.00152 * 185.83368 * 15 12 11 18 18 N 1.31514 * 120.00146 * 0.02562 * 17 15 12 19 19 Si 1.86794 * 120.00018 * 179.97438 * 17 15 12 20 20 H 1.48493 * 109.47255 * 59.99965 * 19 17 15 21 21 H 1.48497 * 109.47208 * 180.02562 * 19 17 15 22 22 H 1.48510 * 109.47282 * 299.99771 * 19 17 15 23 23 H 1.08999 * 109.47108 * 173.67599 * 1 2 3 24 24 H 1.09000 * 109.47228 * 53.67411 * 1 2 3 25 25 H 1.09001 * 109.47370 * 293.66998 * 1 2 3 26 26 H 1.09006 * 109.47299 * 119.99722 * 2 1 3 27 27 H 1.09001 * 109.47142 * 240.00215 * 2 1 3 28 28 H 1.09001 * 108.99385 * 334.89423 * 5 3 2 29 29 H 1.09002 * 108.99489 * 93.63378 * 5 3 2 30 30 H 1.08995 * 109.47285 * 296.36011 * 7 6 5 31 31 H 1.09005 * 109.46522 * 56.36041 * 7 6 5 32 32 H 1.09000 * 109.46913 * 176.35414 * 7 6 5 33 33 H 1.08994 * 108.79229 * 197.39475 * 8 6 5 34 34 H 1.09004 * 108.79210 * 79.17194 * 8 6 5 35 35 H 1.08993 * 109.55720 * 332.81336 * 9 8 6 36 36 H 1.09003 * 109.55687 * 212.49256 * 9 8 6 37 37 H 1.08991 * 109.07231 * 163.45459 * 10 9 8 38 38 H 1.09006 * 109.01671 * 44.46418 * 10 9 8 39 39 H 1.09000 * 109.46519 * 292.63833 * 14 12 11 40 40 H 1.09002 * 109.47116 * 52.63622 * 14 12 11 41 41 H 1.08995 * 109.47126 * 172.64087 * 14 12 11 42 42 H 0.96995 * 120.00326 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6249 1.9796 -0.8528 5 6 1.6331 2.1264 1.2806 6 7 1.3386 3.5591 1.0714 7 6 -0.0482 3.7520 0.6268 8 6 2.2875 4.2366 0.1587 9 6 3.7203 3.8319 0.3949 10 6 4.0682 2.6508 -0.5385 11 7 3.5149 1.4500 -0.0756 12 6 4.0078 0.3077 -0.8567 13 1 3.5843 -0.6144 -0.4587 14 6 5.5340 0.2486 -0.7662 15 6 3.5959 0.4690 -2.2973 16 1 3.1078 1.3764 -2.6211 17 6 3.8420 -0.5419 -3.2020 18 7 4.4358 -1.6471 -2.8077 19 14 3.3307 -0.3423 -4.9875 20 1 4.0197 0.8367 -5.5709 21 1 3.7045 -1.5614 -5.7487 22 1 1.8608 -0.1440 -5.0624 23 1 -0.3633 -1.0214 -0.1132 24 1 -0.3634 0.6088 -0.8279 25 1 -0.3634 0.4126 0.9412 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 0.7444 1.6360 1.6779 29 1 2.4418 2.0327 2.0054 30 1 -0.1881 3.2764 -0.3439 31 1 -0.7277 3.3044 1.3521 32 1 -0.2577 4.8184 0.5426 33 1 2.1995 5.3141 0.2976 34 1 2.0193 3.9944 -0.8697 35 1 3.8465 3.5259 1.4334 36 1 4.3777 4.6740 0.1785 37 1 5.1518 2.5464 -0.5919 38 1 3.6812 2.8602 -1.5358 39 1 5.9620 1.1089 -1.2807 40 1 5.8368 0.2637 0.2808 41 1 5.8904 -0.6690 -1.2343 42 1 4.6093 -2.3582 -3.4442 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300554162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:57 Heat of formation + Delta-G solvation = -2.852395 kcal Electronic energy + Delta-G solvation = -19380.297249 eV Core-core repulsion = 16780.785396 eV Total energy + Delta-G solvation = -2599.511853 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.07867 -37.53560 -35.37822 -34.69799 -32.35188 -30.67566 -28.59955 -27.58135 -26.69581 -25.44041 -23.06414 -22.86462 -20.91998 -20.20870 -18.08717 -17.34935 -16.88912 -16.44281 -16.41489 -15.67131 -15.26103 -14.91571 -14.58022 -14.13284 -13.96045 -13.70146 -13.40068 -13.30420 -13.04107 -12.91468 -12.70762 -12.56013 -12.45848 -12.31639 -12.13913 -12.01214 -11.96765 -11.62813 -11.49933 -11.38359 -11.05193 -10.88468 -10.46635 -9.19706 -8.75294 -8.04295 -6.24244 1.32397 1.34288 1.40572 2.37235 3.04669 3.15467 3.36878 3.97802 4.06099 4.10773 4.23803 4.32890 4.47058 4.50610 4.60595 4.68130 4.71321 4.78878 4.84165 4.89622 4.93167 5.01154 5.02616 5.04800 5.10357 5.14904 5.19403 5.24764 5.32635 5.41423 5.51253 5.56782 5.63852 5.74395 5.96980 6.15934 6.23564 6.25885 6.41798 6.92853 7.02169 7.45346 8.91503 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023796 B = 0.009042 C = 0.008337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.370010 B = 3095.783939 C = 3357.535786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C 0.092 3.908 4 H 0.011 0.989 5 C 0.068 3.932 6 N -0.551 5.551 7 C 0.027 3.973 8 C 0.063 3.937 9 C -0.113 4.113 10 C 0.078 3.922 11 N -0.546 5.546 12 C 0.211 3.789 13 H 0.031 0.969 14 C -0.118 4.118 15 C -0.535 4.535 16 H 0.036 0.964 17 C 0.027 3.973 18 N -0.910 5.910 19 Si 0.935 3.065 20 H -0.278 1.278 21 H -0.282 1.282 22 H -0.278 1.278 23 H 0.058 0.942 24 H 0.040 0.960 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.009 0.991 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.008 0.992 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.061 0.939 38 H -0.008 1.008 39 H 0.027 0.973 40 H 0.034 0.966 41 H 0.046 0.954 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.453 8.384 6.963 12.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C -0.017 4.017 4 H 0.029 0.971 5 C -0.060 4.060 6 N -0.275 5.275 7 C -0.121 4.121 8 C -0.064 4.064 9 C -0.151 4.151 10 C -0.052 4.052 11 N -0.269 5.269 12 C 0.104 3.896 13 H 0.049 0.951 14 C -0.176 4.176 15 C -0.575 4.575 16 H 0.054 0.946 17 C -0.174 4.174 18 N -0.549 5.549 19 Si 0.762 3.238 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.203 1.203 23 H 0.077 0.923 24 H 0.059 0.941 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.027 0.973 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.026 0.974 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.010 0.990 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.177 8.406 7.783 13.014 hybrid contribution -0.304 -0.566 -3.163 3.228 sum -6.481 7.840 4.619 11.172 Atomic orbital electron populations 1.21736 0.94518 1.01643 1.01614 1.21676 0.96261 0.96073 1.02013 1.21527 0.87492 0.96085 0.96625 0.97120 1.22095 1.01627 0.86246 0.96025 1.62252 1.03195 1.13356 1.48740 1.22407 0.89058 1.02184 0.98437 1.21843 0.92433 0.99083 0.93031 1.21577 0.95511 0.97320 1.00654 1.20957 0.99235 0.90371 0.94623 1.59668 1.07796 1.04092 1.55364 1.19191 0.91754 0.89386 0.89277 0.95104 1.21656 0.98202 1.00007 0.97739 1.21706 1.38378 1.01187 0.96196 0.94607 1.25482 0.95233 0.95149 1.01495 1.69996 1.42780 1.06547 1.35608 0.85974 0.78545 0.77411 0.81876 1.20314 1.20683 1.20324 0.92334 0.94070 0.90941 0.92229 0.92597 0.89671 0.90690 0.97253 0.90058 0.90499 0.89570 0.97398 0.90413 0.89301 0.92043 0.98991 0.95417 0.94728 0.93491 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 9.59 71.98 0.69 -3.47 16 2 C -0.12 -4.68 4.16 30.59 0.13 -4.55 16 3 C 0.09 3.49 1.33 44.04 0.06 3.55 16 4 H 0.01 0.47 6.25 -2.39 -0.01 0.45 16 5 C 0.07 2.11 4.69 85.42 0.40 2.51 16 6 N -0.55 -15.69 4.99 -925.81 -4.62 -20.31 16 7 C 0.03 0.66 9.36 127.69 1.20 1.85 16 8 C 0.06 1.86 5.00 85.35 0.43 2.28 16 9 C -0.11 -3.43 5.68 30.38 0.17 -3.26 16 10 C 0.08 3.08 4.41 88.05 0.39 3.47 16 11 N -0.55 -22.88 3.95 -866.11 -3.42 -26.29 16 12 C 0.21 10.38 1.73 44.17 0.08 10.46 16 13 H 0.03 1.68 5.86 -2.39 -0.01 1.66 16 14 C -0.12 -5.68 8.39 71.98 0.60 -5.07 16 15 C -0.54 -28.81 6.25 25.60 0.16 -28.65 16 16 H 0.04 2.00 6.44 -2.91 -0.02 1.98 16 17 C 0.03 1.45 5.33 84.65 0.45 1.90 16 18 N -0.91 -51.65 11.84 21.45 0.25 -51.39 16 19 Si 0.94 43.92 29.54 68.60 2.03 45.94 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 23 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.07 1.81 6.45 -2.39 -0.02 1.79 16 26 H 0.06 2.23 8.07 -2.38 -0.02 2.21 16 27 H 0.06 2.66 5.37 -2.39 -0.01 2.64 16 28 H 0.09 2.35 5.45 -2.39 -0.01 2.33 16 29 H 0.07 2.46 7.20 -2.39 -0.02 2.45 16 30 H 0.01 0.24 7.73 -2.39 -0.02 0.23 16 31 H 0.08 1.67 7.97 -2.38 -0.02 1.66 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.01 0.26 6.41 -2.38 -0.02 0.25 16 35 H 0.08 2.40 7.19 -2.39 -0.02 2.39 16 36 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.06 2.49 5.80 -2.39 -0.01 2.48 16 38 H -0.01 -0.36 6.00 -2.38 -0.01 -0.37 16 39 H 0.03 1.29 6.61 -2.39 -0.02 1.27 16 40 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.05 2.47 6.73 -2.39 -0.02 2.45 16 42 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -57.93 300.25 -0.03 -57.96 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.98 Total: 13.07 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 4.75 Total: -18.97 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -7.79 Total: -98.00 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -57.93 -0.03 -57.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300554162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.112 kcal (2) G-P(sol) polarization free energy of solvation -57.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds