Wall clock time and date at job start Mon Mar 30 2020 05:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47092 * 2 1 4 4 H 1.08997 * 109.57878 * 56.68356 * 3 2 1 5 5 C 1.54209 * 109.57337 * 296.43169 * 3 2 1 6 6 N 1.40009 * 112.08160 * 161.38431 * 5 3 2 7 7 C 1.46896 * 111.00481 * 188.10136 * 6 5 3 8 8 C 1.47908 * 114.07195 * 61.80749 * 6 5 3 9 9 C 1.50806 * 108.49736 * 280.07122 * 8 6 5 10 10 C 1.53697 * 112.09849 * 92.55107 * 9 8 6 11 11 N 1.44583 * 109.57291 * 176.93969 * 3 2 1 12 12 C 1.46891 * 110.99871 * 340.15575 * 11 3 2 13 13 H 1.09007 * 109.47240 * 50.37522 * 12 11 3 14 14 C 1.53003 * 109.47322 * 170.37737 * 12 11 3 15 15 C 1.50701 * 109.47542 * 290.37992 * 12 11 3 16 16 H 1.08007 * 119.99623 * 359.97438 * 15 12 11 17 17 C 1.37874 * 120.00285 * 180.02562 * 15 12 11 18 18 N 1.31512 * 120.00240 * 179.97438 * 17 15 12 19 19 Si 1.86796 * 119.99979 * 359.97438 * 17 15 12 20 20 H 1.48504 * 109.46922 * 90.00510 * 19 17 15 21 21 H 1.48502 * 109.47406 * 210.00357 * 19 17 15 22 22 H 1.48499 * 109.47480 * 330.00705 * 19 17 15 23 23 H 1.08999 * 109.46921 * 187.12566 * 1 2 3 24 24 H 1.08998 * 109.46697 * 67.12461 * 1 2 3 25 25 H 1.08998 * 109.47054 * 307.12732 * 1 2 3 26 26 H 1.09000 * 109.46717 * 119.99342 * 2 1 3 27 27 H 1.08997 * 109.47375 * 239.99494 * 2 1 3 28 28 H 1.09000 * 108.95939 * 282.05371 * 5 3 2 29 29 H 1.08999 * 108.95944 * 40.80062 * 5 3 2 30 30 H 1.09006 * 109.46994 * 59.99407 * 7 6 5 31 31 H 1.08996 * 109.47616 * 180.02562 * 7 6 5 32 32 H 1.09008 * 109.46705 * 300.00161 * 7 6 5 33 33 H 1.09001 * 109.63349 * 39.76965 * 8 6 5 34 34 H 1.08992 * 109.63467 * 160.36965 * 8 6 5 35 35 H 1.09000 * 108.95702 * 213.22275 * 9 8 6 36 36 H 1.08997 * 108.95448 * 331.87349 * 9 8 6 37 37 H 1.09000 * 108.88734 * 79.32136 * 10 9 8 38 38 H 1.09000 * 108.88295 * 197.78504 * 10 9 8 39 39 H 1.09001 * 109.47001 * 66.39574 * 14 12 11 40 40 H 1.08995 * 109.47499 * 186.39681 * 14 12 11 41 41 H 1.09000 * 109.46912 * 306.39637 * 14 12 11 42 42 H 0.97000 * 120.00618 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6300 1.9749 0.8582 5 6 1.6025 2.1451 -1.3011 6 7 1.6625 3.5397 -1.1920 7 6 1.0630 4.1861 -2.3670 8 6 3.0198 4.0666 -0.9320 9 6 3.3225 3.9054 0.5366 10 6 4.0443 2.5819 0.8362 11 7 3.4840 1.4457 0.0727 12 6 3.9880 0.1654 0.5871 13 1 3.5357 -0.6540 0.0285 14 6 5.5087 0.1142 0.4262 15 6 3.6326 0.0352 2.0458 16 1 3.0872 0.8248 2.5413 17 6 4.0046 -1.0915 2.7481 18 7 3.6949 -1.2050 4.0212 19 14 4.9485 -2.4569 1.8913 20 1 6.4065 -2.2025 2.0132 21 1 4.6187 -3.7592 2.5240 22 1 4.5709 -2.4943 0.4556 23 1 -0.3633 -1.0197 0.1275 24 1 -0.3633 0.3995 -0.9468 25 1 -0.3633 0.6203 0.8193 26 1 1.8933 -0.5137 0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 2.2552 1.8251 -2.1132 29 1 0.5785 1.8532 -1.5341 30 1 0.0184 3.8868 -2.4529 31 1 1.1233 5.2687 -2.2565 32 1 1.6030 3.8821 -3.2638 33 1 3.7484 3.5079 -1.5195 34 1 3.0606 5.1222 -1.2005 35 1 3.9524 4.7336 0.8613 36 1 2.3874 3.9333 1.0959 37 1 5.0994 2.6907 0.5852 38 1 3.9574 2.3660 1.9011 39 1 5.9679 0.8613 1.0736 40 1 5.8701 -0.8766 0.7015 41 1 5.7714 0.3215 -0.6112 42 1 3.9562 -1.9978 4.5152 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300554163.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:00 Heat of formation + Delta-G solvation = 5.300184 kcal Electronic energy + Delta-G solvation = -19308.383304 eV Core-core repulsion = 16709.224974 eV Total energy + Delta-G solvation = -2599.158330 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.90967 -37.96564 -35.18211 -34.66483 -32.91728 -30.97621 -28.58240 -27.51633 -26.78719 -25.44355 -23.04791 -22.57923 -21.30388 -20.02920 -18.37004 -17.47054 -16.74172 -16.49451 -16.35975 -15.73898 -15.15305 -15.03855 -14.58483 -14.55576 -14.07968 -13.93075 -13.78465 -13.36489 -13.06507 -12.93504 -12.64981 -12.56478 -12.36963 -12.23171 -12.13551 -11.83776 -11.63628 -11.55464 -11.38101 -11.33635 -11.22752 -10.84321 -10.67724 -9.04167 -8.74392 -8.28253 -6.28732 1.30497 1.35465 1.45302 2.32044 3.07031 3.13171 3.30300 3.99977 4.07195 4.22161 4.28666 4.35434 4.46531 4.57431 4.63493 4.64178 4.70295 4.75468 4.76674 4.83599 4.84422 4.89755 4.98993 5.04479 5.07364 5.08345 5.18116 5.22722 5.29372 5.36100 5.39091 5.49780 5.51956 5.56572 5.72459 6.23278 6.31574 6.45728 6.57120 6.74676 6.78228 7.36158 8.88352 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.029315 B = 0.008686 C = 0.007786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.924717 B = 3222.693717 C = 3595.383598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.113 3.887 4 H 0.020 0.980 5 C 0.092 3.908 6 N -0.572 5.572 7 C 0.034 3.966 8 C 0.078 3.922 9 C -0.112 4.112 10 C 0.064 3.936 11 N -0.534 5.534 12 C 0.174 3.826 13 H 0.047 0.953 14 C -0.141 4.141 15 C -0.515 4.515 16 H 0.031 0.969 17 C 0.017 3.983 18 N -0.948 5.948 19 Si 0.943 3.057 20 H -0.271 1.271 21 H -0.302 1.302 22 H -0.246 1.246 23 H 0.055 0.945 24 H 0.070 0.930 25 H 0.041 0.959 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.017 0.983 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.025 0.975 33 H 0.039 0.961 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.049 0.951 37 H 0.065 0.935 38 H 0.013 0.987 39 H 0.045 0.955 40 H 0.032 0.968 41 H 0.062 0.938 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.786 7.978 -13.378 15.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.177 4.177 3 C 0.004 3.996 4 H 0.038 0.962 5 C -0.038 4.038 6 N -0.296 5.296 7 C -0.113 4.113 8 C -0.049 4.049 9 C -0.151 4.151 10 C -0.064 4.064 11 N -0.258 5.258 12 C 0.066 3.934 13 H 0.064 0.936 14 C -0.198 4.198 15 C -0.554 4.554 16 H 0.049 0.951 17 C -0.181 4.181 18 N -0.589 5.589 19 Si 0.771 3.229 20 H -0.198 1.198 21 H -0.230 1.230 22 H -0.170 1.170 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.035 0.965 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.031 0.969 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.081 0.919 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.879 8.055 -13.318 15.828 hybrid contribution 0.694 -1.225 0.841 1.639 sum -2.185 6.831 -12.477 14.391 Atomic orbital electron populations 1.21727 0.94788 1.01386 1.01620 1.22004 0.96551 0.96472 1.02669 1.21128 0.87508 0.95090 0.95910 0.96209 1.20949 1.00135 0.87203 0.95561 1.59213 1.22358 1.07026 1.40988 1.22357 0.99468 0.99823 0.89661 1.21712 0.88102 0.99617 0.95452 1.21423 1.00094 0.96087 0.97450 1.22266 0.98456 0.90314 0.95344 1.61203 1.08506 1.02751 1.53332 1.19787 0.92161 0.89540 0.91930 0.93560 1.22071 0.97833 0.99331 1.00581 1.21682 1.34645 1.03371 0.95752 0.95063 1.25738 0.96656 1.00646 0.95032 1.70062 1.49056 1.29798 1.09949 0.85941 0.79185 0.77851 0.79915 1.19774 1.23028 1.16962 0.92615 0.91137 0.94020 0.91224 0.92173 0.96474 0.90206 0.91055 0.90299 0.95639 0.94215 0.89288 0.89700 0.93180 0.91692 0.96907 0.93625 0.94975 0.91945 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.34 9.51 71.98 0.68 -3.66 16 2 C -0.14 -5.35 4.01 30.60 0.12 -5.23 16 3 C 0.11 4.33 1.62 45.76 0.07 4.41 16 4 H 0.02 0.87 6.94 -2.39 -0.02 0.86 16 5 C 0.09 2.83 4.40 87.96 0.39 3.22 16 6 N -0.57 -15.91 4.32 -938.77 -4.06 -19.97 16 7 C 0.03 0.70 9.47 127.69 1.21 1.91 16 8 C 0.08 2.11 5.34 85.40 0.46 2.56 16 9 C -0.11 -3.51 5.36 30.12 0.16 -3.35 16 10 C 0.06 2.48 4.62 86.34 0.40 2.88 16 11 N -0.53 -21.61 3.89 -849.36 -3.30 -24.91 16 12 C 0.17 7.95 1.44 44.17 0.06 8.02 16 13 H 0.05 2.17 4.71 -2.38 -0.01 2.16 16 14 C -0.14 -5.93 8.22 71.98 0.59 -5.34 16 15 C -0.52 -28.36 5.83 25.60 0.15 -28.21 16 16 H 0.03 1.97 6.84 -2.91 -0.02 1.95 16 17 C 0.02 0.97 5.45 84.65 0.46 1.43 16 18 N -0.95 -58.92 13.96 21.45 0.30 -58.62 16 19 Si 0.94 44.75 24.31 68.60 1.67 46.41 16 20 H -0.27 -12.43 6.93 99.48 0.69 -11.74 16 21 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 22 H -0.25 -10.76 6.53 99.48 0.65 -10.12 16 23 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.07 1.84 6.51 -2.39 -0.02 1.82 16 25 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 26 H 0.07 3.30 4.95 -2.39 -0.01 3.29 16 27 H 0.06 2.20 7.49 -2.39 -0.02 2.18 16 28 H 0.02 0.55 8.07 -2.39 -0.02 0.53 16 29 H 0.08 2.23 5.80 -2.39 -0.01 2.21 16 30 H 0.07 1.33 8.05 -2.38 -0.02 1.31 16 31 H 0.08 1.36 7.87 -2.39 -0.02 1.34 16 32 H 0.03 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.04 1.17 7.57 -2.39 -0.02 1.15 16 34 H 0.09 1.91 7.69 -2.39 -0.02 1.89 16 35 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.05 1.75 7.23 -2.39 -0.02 1.73 16 37 H 0.06 2.39 7.13 -2.39 -0.02 2.38 16 38 H 0.01 0.60 5.99 -2.39 -0.01 0.58 16 39 H 0.04 1.93 7.05 -2.39 -0.02 1.92 16 40 H 0.03 1.37 3.47 -2.39 -0.01 1.37 16 41 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -63.03 294.72 0.27 -62.76 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.90 Total: 15.69 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 4.76 Total: -21.36 kcal Atomic # 7 Polarization: -96.44 SS G_CDS: -7.06 Total: -103.50 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.67 Total: 46.41 kcal Total: -63.03 0.27 -62.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300554163.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.060 kcal (2) G-P(sol) polarization free energy of solvation -63.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds